RNA–Protein interactions for RNA: ENST00000524028.1

PTP4A3-206, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 5 BASIC

Gene PTP4A3, Length 963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-206ENST00000524028 NISCHQ9Y2I1 1504 aa47.01■■■■■ 5.12
PTP4A3-206ENST00000524028 ABCC9O60706 1549 aa42.05■■■■■ 4.32
PTP4A3-206ENST00000524028 CCDC180Q9P1Z9 1646 aa42.03■■■■■ 4.32
PTP4A3-206ENST00000524028 RB1CC1Q8TDY2 1594 aa40■■■■□ 3.99
PTP4A3-206ENST00000524028 NACADO15069 1562 aa39.76■■■■□ 3.96
PTP4A3-206ENST00000524028 DCAF8L2P0C7V8 631 aa39.67■■■■□ 3.94
PTP4A3-206ENST00000524028 DNAJC5BQ9UF47 199 aa39.45■■■■□ 3.91
PTP4A3-206ENST00000524028 MYO15BQ96JP2 1530 aa39.26■■■■□ 3.88
PTP4A3-206ENST00000524028 PABPN1Q86U42 306 aaKnown RBP eCLIP39.23■■■■□ 3.87
PTP4A3-206ENST00000524028 UNC13AQ9UPW8 1703 aa39.06■■■■□ 3.84
PTP4A3-206ENST00000524028 ZCCHC6Q5VYS8 1495 aaKnown RBP38.98■■■■□ 3.83
PTP4A3-206ENST00000524028 BICRAQ9NZM4 1560 aa38.9■■■■□ 3.82
PTP4A3-206ENST00000524028 DCAF1Q9Y4B6 1507 aa38.8■■■■□ 3.8
PTP4A3-206ENST00000524028 SCRIBQ14160 1630 aa38.38■■■■□ 3.73
PTP4A3-206ENST00000524028 SHROOM4Q9ULL8 1493 aa38.3■■■■□ 3.72
PTP4A3-206ENST00000524028 CC2D2AQ9P2K1 1620 aa37.95■■■■□ 3.67
PTP4A3-206ENST00000524028 EIF4G1Q04637 1599 aaKnown RBP37.9■■■■□ 3.66
PTP4A3-206ENST00000524028 CECR2Q9BXF3 1484 aa37.85■■■■□ 3.65
PTP4A3-206ENST00000524028 NCAPD3P42695 1498 aa36.76■■■■□ 3.48
PTP4A3-206ENST00000524028 ATAD2BQ9ULI0 1458 aa36.68■■■■□ 3.46
PTP4A3-206ENST00000524028 SMARCA4P51532 1647 aa36.61■■■■□ 3.45
PTP4A3-206ENST00000524028 SMARCA2P51531 1590 aa36.5■■■■□ 3.43
PTP4A3-206ENST00000524028 BAZ1AQ9NRL2 1556 aaPredicted RBP36.44■■■■□ 3.42
PTP4A3-206ENST00000524028 HMGXB3Q12766 1538 aa36.44■■■■□ 3.42
PTP4A3-206ENST00000524028 BAZ1BQ9UIG0 1483 aaKnown RBP36.29■■■■□ 3.4
PTP4A3-206ENST00000524028 PEG3Q9GZU2 1588 aa36.27■■■■□ 3.4
PTP4A3-206ENST00000524028 MROH2BQ7Z745 1585 aa36.26■■■■□ 3.39
PTP4A3-206ENST00000524028 ERCC6Q03468 1493 aa36.24■■■■□ 3.39
PTP4A3-206ENST00000524028 NESP48681 1621 aa36.18■■■■□ 3.38
PTP4A3-206ENST00000524028 CUX2O14529 1486 aa36.14■■■■□ 3.38
PTP4A3-206ENST00000524028 DNAJC5Q9H3Z4 198 aa36.07■■■■□ 3.36
PTP4A3-206ENST00000524028 LAMC3Q9Y6N6 1575 aa35.85■■■■□ 3.33
PTP4A3-206ENST00000524028 WIZO95785 1651 aa35.78■■■■□ 3.32
PTP4A3-206ENST00000524028 THOC2Q8NI27 1593 aaKnown RBP35.72■■■■□ 3.31
PTP4A3-206ENST00000524028 PDS5BQ9NTI5 1447 aa35.67■■■■□ 3.3
PTP4A3-206ENST00000524028 CADPSQ9ULU8 1353 aa35.66■■■■□ 3.3
PTP4A3-206ENST00000524028 KIF21AQ7Z4S6 1674 aa35.62■■■■□ 3.29
PTP4A3-206ENST00000524028 RSF1Q96T23 1441 aaPredicted RBP35.56■■■■□ 3.28
PTP4A3-206ENST00000524028 MRC2Q9UBG0 1479 aa35.36■■■■□ 3.25
PTP4A3-206ENST00000524028 TOP2AP11388 1531 aaKnown RBP35.33■■■■□ 3.25
PTP4A3-206ENST00000524028 CFTRP13569 1480 aa35.27■■■■□ 3.24
PTP4A3-206ENST00000524028 WDR62O43379 1518 aa35.27■■■■□ 3.24
PTP4A3-206ENST00000524028 FANCD2Q9BXW9 1451 aa35.23■■■■□ 3.23
PTP4A3-206ENST00000524028 CEP164Q9UPV0 1460 aa35.23■■■■□ 3.23
PTP4A3-206ENST00000524028 CCDC88BA6NC98 1476 aa34.99■■■■□ 3.19
PTP4A3-206ENST00000524028 URB2Q14146 1524 aaKnown RBP34.96■■■■□ 3.19
PTP4A3-206ENST00000524028 PRDM2Q13029 1718 aa34.77■■■■□ 3.16
PTP4A3-206ENST00000524028 TOPBP1Q92547 1522 aa34.58■■■■□ 3.13
PTP4A3-206ENST00000524028 OSCARQ8IYS5 282 aa34.56■■■■□ 3.12
PTP4A3-206ENST00000524028 IFT140Q96RY7 1462 aa34.53■■■■□ 3.12
PTP4A3-206ENST00000524028 TRIM41Q8WV44 630 aa34.53■■■■□ 3.12
PTP4A3-206ENST00000524028 ZNF608Q9ULD9 1512 aaPredicted RBP34.53■■■■□ 3.12
PTP4A3-206ENST00000524028 ABCC8Q09428 1581 aa34.46■■■■□ 3.11
PTP4A3-206ENST00000524028 DNMBPQ6XZF7 1577 aa34.43■■■■□ 3.1
PTP4A3-206ENST00000524028 EIF4G3O43432 1585 aaKnown RBP34.27■■■■□ 3.08
PTP4A3-206ENST00000524028 TARBP1Q13395 1621 aaKnown RBP34.25■■■■□ 3.07
PTP4A3-206ENST00000524028 POLA1P09884 1462 aaPredicted RBP34.24■■■■□ 3.07
PTP4A3-206ENST00000524028 AQRO60306 1485 aaKnown RBP eCLIP34.23■■■■□ 3.074e-7■■■■□ 23.2
PTP4A3-206ENST00000524028 RAD54L2Q9Y4B4 1467 aa34.15■■■■□ 3.06
PTP4A3-206ENST00000524028 SOGA1O94964 1423 aa34.1■■■■□ 3.05
PTP4A3-206ENST00000524028 SUPT5HO00267 1087 aaKnown RBP34.08■■■■□ 3.05
PTP4A3-206ENST00000524028 RIMBP3CA6NJZ7 1639 aa34.05■■■■□ 3.04
PTP4A3-206ENST00000524028 RIMBP3BA6NNM3 1639 aa34.05■■■■□ 3.04
PTP4A3-206ENST00000524028 RIMBP3Q9UFD9 1639 aa34.05■■■■□ 3.04
PTP4A3-206ENST00000524028 TDRD9Q8NDG6 1382 aaKnown RBP34.05■■■■□ 3.04
PTP4A3-206ENST00000524028 CUX1P39880 1505 aa34.04■■■■□ 3.04
PTP4A3-206ENST00000524028 FGD5Q6ZNL6 1462 aa34.04■■■■□ 3.04
PTP4A3-206ENST00000524028 ARHGEF11O15085 1522 aa33.99■■■■□ 3.03
PTP4A3-206ENST00000524028 FBLN2P98095 1184 aa33.97■■■■□ 3.03
PTP4A3-206ENST00000524028 CHD1O14646 1710 aa33.96■■■■□ 3.03
PTP4A3-206ENST00000524028 SNAPC4Q5SXM2 1469 aa33.85■■■■□ 3.01
PTP4A3-206ENST00000524028 WDR97A6NE52 1622 aa33.84■■■■□ 3.01
PTP4A3-206ENST00000524028 CYB5RLQ6IPT4 315 aa33.77■■■■□ 3
PTP4A3-206ENST00000524028 GRIN2BQ13224 1484 aa33.76■■■■□ 3
PTP4A3-206ENST00000524028 MAGI1Q96QZ7 1491 aaPredicted RBP33.73■■■□□ 2.99
PTP4A3-206ENST00000524028 CHMP7Q8WUX9 453 aaPredicted RBP33.72■■■□□ 2.99
PTP4A3-206ENST00000524028 ARAP1Q96P48 1450 aa33.68■■■□□ 2.98
PTP4A3-206ENST00000524028 GAPVD1Q14C86 1478 aa33.66■■■□□ 2.98
PTP4A3-206ENST00000524028 ABCA10Q8WWZ4 1543 aa33.65■■■□□ 2.98
PTP4A3-206ENST00000524028 CLASP1Q7Z460 1538 aa33.63■■■□□ 2.97
PTP4A3-206ENST00000524028 SYNJ2O15056 1496 aa33.63■■■□□ 2.97
PTP4A3-206ENST00000524028 SYNJ1O43426 1573 aa33.57■■■□□ 2.96
PTP4A3-206ENST00000524028 PBRM1Q86U86 1689 aa33.57■■■□□ 2.96
PTP4A3-206ENST00000524028 ABCA5Q8WWZ7 1642 aa33.57■■■□□ 2.96
PTP4A3-206ENST00000524028 WRNQ14191 1432 aaPredicted RBP eCLIP33.54■■■□□ 2.965e-7■■□□□ 14.4
PTP4A3-206ENST00000524028 TOP2BQ02880 1626 aa33.48■■■□□ 2.95
PTP4A3-206ENST00000524028 BIVM-ERCC5R4GMW8 1640 aa33.46■■■□□ 2.95
PTP4A3-206ENST00000524028 GRIN2AQ12879 1464 aa33.33■■■□□ 2.93
PTP4A3-206ENST00000524028 TRHP20396 242 aaPredicted RBP33.33■■■□□ 2.93
PTP4A3-206ENST00000524028 ADAMTS12P58397 1594 aa33.3■■■□□ 2.92
PTP4A3-206ENST00000524028 FHAD1B1AJZ9 1412 aa33.25■■■□□ 2.91
PTP4A3-206ENST00000524028 NUP160Q12769 1436 aa33.23■■■□□ 2.91
PTP4A3-206ENST00000524028 CEP170Q5SW79 1584 aa33.21■■■□□ 2.91
PTP4A3-206ENST00000524028 ERICH3Q5RHP9 1530 aa33.21■■■□□ 2.91
PTP4A3-206ENST00000524028 ERCC6L2Q5T890 1561 aa33.17■■■□□ 2.9
PTP4A3-206ENST00000524028 SHROOM2Q13796 1616 aa33.03■■■□□ 2.88
PTP4A3-206ENST00000524028 JPH4Q96JJ6 628 aa32.92■■■□□ 2.86
PTP4A3-206ENST00000524028 PRG4Q92954 1404 aaPredicted RBP32.92■■■□□ 2.86
PTP4A3-206ENST00000524028 IGF1RP08069 1367 aa32.9■■■□□ 2.86
PTP4A3-206ENST00000524028 KIF27Q86VH2 1401 aa32.85■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms