RNA–Protein interactions for RNA: ENST00000523912.5

CTNNA1-240, Transcript of catenin alpha 1, humanhuman

TSL 4

Gene CTNNA1, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-240ENST00000523912 NISCHQ9Y2I1 1504 aa21.87■■□□□ 1.09
CTNNA1-240ENST00000523912 ABCC9O60706 1549 aa19.73■□□□□ 0.75
CTNNA1-240ENST00000523912 CCDC180Q9P1Z9 1646 aa19.66■□□□□ 0.74
CTNNA1-240ENST00000523912 RB1CC1Q8TDY2 1594 aa18.8■□□□□ 0.6
CTNNA1-240ENST00000523912 DNAJC5BQ9UF47 199 aa18.67■□□□□ 0.58
CTNNA1-240ENST00000523912 NACADO15069 1562 aa18.66■□□□□ 0.58
CTNNA1-240ENST00000523912 DCAF8L2P0C7V8 631 aa18.44■□□□□ 0.54
CTNNA1-240ENST00000523912 MYO15BQ96JP2 1530 aa18.42■□□□□ 0.54
CTNNA1-240ENST00000523912 PABPN1Q86U42 306 aaKnown RBP eCLIP18.32■□□□□ 0.52
CTNNA1-240ENST00000523912 UNC13AQ9UPW8 1703 aa18.26■□□□□ 0.51
CTNNA1-240ENST00000523912 BICRAQ9NZM4 1560 aa18.21■□□□□ 0.51
CTNNA1-240ENST00000523912 ZCCHC6Q5VYS8 1495 aaKnown RBP18.18■□□□□ 0.5
CTNNA1-240ENST00000523912 SHROOM4Q9ULL8 1493 aa18.11■□□□□ 0.49
CTNNA1-240ENST00000523912 DCAF1Q9Y4B6 1507 aa18.11■□□□□ 0.49
CTNNA1-240ENST00000523912 SCRIBQ14160 1630 aa17.84■□□□□ 0.45
CTNNA1-240ENST00000523912 CC2D2AQ9P2K1 1620 aa17.84■□□□□ 0.45
CTNNA1-240ENST00000523912 CECR2Q9BXF3 1484 aa17.84■□□□□ 0.45
CTNNA1-240ENST00000523912 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
CTNNA1-240ENST00000523912 DNAJC5Q9H3Z4 198 aa17.37■□□□□ 0.37
CTNNA1-240ENST00000523912 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
CTNNA1-240ENST00000523912 CUX2O14529 1486 aa17.19■□□□□ 0.34
CTNNA1-240ENST00000523912 ATAD2BQ9ULI0 1458 aa17.12■□□□□ 0.33
CTNNA1-240ENST00000523912 SMARCA2P51531 1590 aa17.08■□□□□ 0.32
CTNNA1-240ENST00000523912 ERCC6Q03468 1493 aa17.08■□□□□ 0.32
CTNNA1-240ENST00000523912 HMGXB3Q12766 1538 aa17.07■□□□□ 0.32
CTNNA1-240ENST00000523912 SMARCA4P51532 1647 aa17.03■□□□□ 0.32
CTNNA1-240ENST00000523912 BAZ1AQ9NRL2 1556 aaPredicted RBP17.01■□□□□ 0.31
CTNNA1-240ENST00000523912 PEG3Q9GZU2 1588 aa16.93■□□□□ 0.3
CTNNA1-240ENST00000523912 BAZ1BQ9UIG0 1483 aaKnown RBP16.92■□□□□ 0.3
CTNNA1-240ENST00000523912 NESP48681 1621 aa16.88■□□□□ 0.29
CTNNA1-240ENST00000523912 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
CTNNA1-240ENST00000523912 MROH2BQ7Z745 1585 aa16.82■□□□□ 0.28
CTNNA1-240ENST00000523912 THOC2Q8NI27 1593 aaKnown RBP16.8■□□□□ 0.28
CTNNA1-240ENST00000523912 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.27
CTNNA1-240ENST00000523912 CADPSQ9ULU8 1353 aa16.68■□□□□ 0.26
CTNNA1-240ENST00000523912 KIF21AQ7Z4S6 1674 aa16.65■□□□□ 0.26
CTNNA1-240ENST00000523912 MRC2Q9UBG0 1479 aa16.6■□□□□ 0.25
CTNNA1-240ENST00000523912 WIZO95785 1651 aa16.59■□□□□ 0.25
CTNNA1-240ENST00000523912 WDR62O43379 1518 aa16.56■□□□□ 0.24
CTNNA1-240ENST00000523912 RSF1Q96T23 1441 aaPredicted RBP16.55■□□□□ 0.24
CTNNA1-240ENST00000523912 TOP2AP11388 1531 aaKnown RBP16.49■□□□□ 0.23
CTNNA1-240ENST00000523912 CEP164Q9UPV0 1460 aa16.48■□□□□ 0.23
CTNNA1-240ENST00000523912 CFTRP13569 1480 aa16.46■□□□□ 0.23
CTNNA1-240ENST00000523912 FANCD2Q9BXW9 1451 aa16.45■□□□□ 0.22
CTNNA1-240ENST00000523912 TRIM41Q8WV44 630 aa16.4■□□□□ 0.22
CTNNA1-240ENST00000523912 OSCARQ8IYS5 282 aa16.37■□□□□ 0.21
CTNNA1-240ENST00000523912 URB2Q14146 1524 aaKnown RBP16.3■□□□□ 0.2
CTNNA1-240ENST00000523912 CCDC88BA6NC98 1476 aa16.26■□□□□ 0.19
CTNNA1-240ENST00000523912 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
CTNNA1-240ENST00000523912 IFT140Q96RY7 1462 aa16.2■□□□□ 0.18
CTNNA1-240ENST00000523912 ABCC8Q09428 1581 aa16.17■□□□□ 0.18
CTNNA1-240ENST00000523912 TOPBP1Q92547 1522 aa16.12■□□□□ 0.17
CTNNA1-240ENST00000523912 ZNF608Q9ULD9 1512 aaPredicted RBP16.11■□□□□ 0.17
CTNNA1-240ENST00000523912 RIMBP3CA6NJZ7 1639 aa16.08■□□□□ 0.17
CTNNA1-240ENST00000523912 RIMBP3BA6NNM3 1639 aa16.08■□□□□ 0.17
CTNNA1-240ENST00000523912 RIMBP3Q9UFD9 1639 aa16.08■□□□□ 0.17
CTNNA1-240ENST00000523912 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
CTNNA1-240ENST00000523912 ARHGEF11O15085 1522 aa16.05■□□□□ 0.16
CTNNA1-240ENST00000523912 EIF4G3O43432 1585 aaKnown RBP16.01■□□□□ 0.15
CTNNA1-240ENST00000523912 TARBP1Q13395 1621 aaKnown RBP15.98■□□□□ 0.15
CTNNA1-240ENST00000523912 AQRO60306 1485 aaKnown RBP eCLIP15.95■□□□□ 0.144e-6■■□□□ 13.8
CTNNA1-240ENST00000523912 POLA1P09884 1462 aaPredicted RBP15.94■□□□□ 0.14
CTNNA1-240ENST00000523912 SUPT5HO00267 1087 aaKnown RBP15.93■□□□□ 0.14
CTNNA1-240ENST00000523912 CYB5RLQ6IPT4 315 aa15.92■□□□□ 0.14
CTNNA1-240ENST00000523912 WDR97A6NE52 1622 aa15.9■□□□□ 0.14
CTNNA1-240ENST00000523912 CHD1O14646 1710 aa15.9■□□□□ 0.14
CTNNA1-240ENST00000523912 SOGA1O94964 1423 aa15.87■□□□□ 0.13
CTNNA1-240ENST00000523912 ARAP1Q96P48 1450 aa15.87■□□□□ 0.13
CTNNA1-240ENST00000523912 FBLN2P98095 1184 aa15.85■□□□□ 0.13
CTNNA1-240ENST00000523912 FGD5Q6ZNL6 1462 aa15.84■□□□□ 0.13
CTNNA1-240ENST00000523912 RAD54L2Q9Y4B4 1467 aa15.84■□□□□ 0.13
CTNNA1-240ENST00000523912 TDRD9Q8NDG6 1382 aaKnown RBP15.83■□□□□ 0.12
CTNNA1-240ENST00000523912 CUX1P39880 1505 aa15.82■□□□□ 0.12
CTNNA1-240ENST00000523912 MAGI1Q96QZ7 1491 aaPredicted RBP15.81■□□□□ 0.12
CTNNA1-240ENST00000523912 CLASP1Q7Z460 1538 aa15.78■□□□□ 0.12
CTNNA1-240ENST00000523912 SNAPC4Q5SXM2 1469 aa15.78■□□□□ 0.12
CTNNA1-240ENST00000523912 GRIN2BQ13224 1484 aa15.78■□□□□ 0.12
CTNNA1-240ENST00000523912 TRHP20396 242 aaPredicted RBP15.77■□□□□ 0.12
CTNNA1-240ENST00000523912 CHMP7Q8WUX9 453 aaPredicted RBP15.77■□□□□ 0.12
CTNNA1-240ENST00000523912 SYNJ1O43426 1573 aa15.77■□□□□ 0.11
CTNNA1-240ENST00000523912 SYNJ2O15056 1496 aa15.74■□□□□ 0.11
CTNNA1-240ENST00000523912 WRNQ14191 1432 aaPredicted RBP eCLIP15.68■□□□□ 0.1
CTNNA1-240ENST00000523912 GAPVD1Q14C86 1478 aa15.68■□□□□ 0.1
CTNNA1-240ENST00000523912 ABCA10Q8WWZ4 1543 aa15.68■□□□□ 0.1
CTNNA1-240ENST00000523912 PBRM1Q86U86 1689 aa15.62■□□□□ 0.09
CTNNA1-240ENST00000523912 TOP2BQ02880 1626 aa15.61■□□□□ 0.09
CTNNA1-240ENST00000523912 ABCA5Q8WWZ7 1642 aa15.61■□□□□ 0.09
CTNNA1-240ENST00000523912 BIVM-ERCC5R4GMW8 1640 aa15.58■□□□□ 0.09
CTNNA1-240ENST00000523912 GRIN2AQ12879 1464 aa15.55■□□□□ 0.08
CTNNA1-240ENST00000523912 NUP160Q12769 1436 aa15.54■□□□□ 0.08
CTNNA1-240ENST00000523912 ADAMTS12P58397 1594 aa15.51■□□□□ 0.07
CTNNA1-240ENST00000523912 FHAD1B1AJZ9 1412 aa15.51■□□□□ 0.07
CTNNA1-240ENST00000523912 ERICH3Q5RHP9 1530 aa15.49■□□□□ 0.07
CTNNA1-240ENST00000523912 AEBP2Q6ZN18 517 aaPredicted RBP15.48■□□□□ 0.07
CTNNA1-240ENST00000523912 CEP170Q5SW79 1584 aa15.48■□□□□ 0.07
CTNNA1-240ENST00000523912 SHROOM2Q13796 1616 aa15.46■□□□□ 0.07
CTNNA1-240ENST00000523912 ERCC6L2Q5T890 1561 aa15.45■□□□□ 0.06
CTNNA1-240ENST00000523912 KIF27Q86VH2 1401 aa15.39■□□□□ 0.05
CTNNA1-240ENST00000523912 JPH4Q96JJ6 628 aa15.37■□□□□ 0.05
CTNNA1-240ENST00000523912 PRG4Q92954 1404 aaPredicted RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms