RNA–Protein interactions for RNA: ENST00000523824.5

NSMCE2-213, Transcript of NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase, humanhuman

TSL 3

Gene NSMCE2, Length 592 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE2-213ENST00000523824 NISCHQ9Y2I1 1504 aa20.06■□□□□ 0.8
NSMCE2-213ENST00000523824 ABCC9O60706 1549 aa18.34■□□□□ 0.53
NSMCE2-213ENST00000523824 CCDC180Q9P1Z9 1646 aa18.04■□□□□ 0.48
NSMCE2-213ENST00000523824 DNAJC5BQ9UF47 199 aa17.43■□□□□ 0.38
NSMCE2-213ENST00000523824 AEBP2Q6ZN18 517 aaPredicted RBP17.4■□□□□ 0.38
NSMCE2-213ENST00000523824 RB1CC1Q8TDY2 1594 aa17.33■□□□□ 0.37
NSMCE2-213ENST00000523824 DCAF8L2P0C7V8 631 aa17.17■□□□□ 0.34
NSMCE2-213ENST00000523824 NACADO15069 1562 aa17.15■□□□□ 0.34
NSMCE2-213ENST00000523824 PABPN1Q86U42 306 aaKnown RBP eCLIP17.1■□□□□ 0.33
NSMCE2-213ENST00000523824 UNC13AQ9UPW8 1703 aa16.85■□□□□ 0.29
NSMCE2-213ENST00000523824 MYO15BQ96JP2 1530 aa16.82■□□□□ 0.28
NSMCE2-213ENST00000523824 BICRAQ9NZM4 1560 aa16.81■□□□□ 0.28
NSMCE2-213ENST00000523824 CHIC1Q5VXU3 224 aa16.78■□□□□ 0.28
NSMCE2-213ENST00000523824 ZCCHC6Q5VYS8 1495 aaKnown RBP16.55■□□□□ 0.24
NSMCE2-213ENST00000523824 CECR2Q9BXF3 1484 aa16.55■□□□□ 0.24
NSMCE2-213ENST00000523824 SHROOM4Q9ULL8 1493 aa16.55■□□□□ 0.24
NSMCE2-213ENST00000523824 DCAF1Q9Y4B6 1507 aa16.53■□□□□ 0.24
NSMCE2-213ENST00000523824 CC2D2AQ9P2K1 1620 aa16.52■□□□□ 0.23
NSMCE2-213ENST00000523824 SCRIBQ14160 1630 aa16.47■□□□□ 0.23
NSMCE2-213ENST00000523824 EIF4G1Q04637 1599 aaKnown RBP16.43■□□□□ 0.22
NSMCE2-213ENST00000523824 DNAJC5Q9H3Z4 198 aa16.19■□□□□ 0.18
NSMCE2-213ENST00000523824 CUX2O14529 1486 aa15.89■□□□□ 0.13
NSMCE2-213ENST00000523824 ERCC6Q03468 1493 aa15.88■□□□□ 0.13
NSMCE2-213ENST00000523824 NCAPD3P42695 1498 aa15.86■□□□□ 0.13
NSMCE2-213ENST00000523824 ATAD2BQ9ULI0 1458 aa15.78■□□□□ 0.12
NSMCE2-213ENST00000523824 SMARCA2P51531 1590 aa15.71■□□□□ 0.11
NSMCE2-213ENST00000523824 HMGXB3Q12766 1538 aa15.68■□□□□ 0.1
NSMCE2-213ENST00000523824 NESP48681 1621 aa15.68■□□□□ 0.1
NSMCE2-213ENST00000523824 SMARCA4P51532 1647 aa15.67■□□□□ 0.1
NSMCE2-213ENST00000523824 BAZ1BQ9UIG0 1483 aaKnown RBP15.62■□□□□ 0.09
NSMCE2-213ENST00000523824 BAZ1AQ9NRL2 1556 aaPredicted RBP15.58■□□□□ 0.08
NSMCE2-213ENST00000523824 THOC2Q8NI27 1593 aaKnown RBP15.51■□□□□ 0.07
NSMCE2-213ENST00000523824 LAMC3Q9Y6N6 1575 aa15.51■□□□□ 0.07
NSMCE2-213ENST00000523824 PEG3Q9GZU2 1588 aa15.5■□□□□ 0.07
NSMCE2-213ENST00000523824 PDS5BQ9NTI5 1447 aa15.49■□□□□ 0.07
NSMCE2-213ENST00000523824 MROH2BQ7Z745 1585 aa15.45■□□□□ 0.06
NSMCE2-213ENST00000523824 TRIM41Q8WV44 630 aa15.43■□□□□ 0.06
NSMCE2-213ENST00000523824 KIF21AQ7Z4S6 1674 aa15.42■□□□□ 0.06
NSMCE2-213ENST00000523824 CADPSQ9ULU8 1353 aa15.39■□□□□ 0.05
NSMCE2-213ENST00000523824 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.05
NSMCE2-213ENST00000523824 WDR62O43379 1518 aa15.27■□□□□ 0.04
NSMCE2-213ENST00000523824 WIZO95785 1651 aa15.24■□□□□ 0.03
NSMCE2-213ENST00000523824 CEP164Q9UPV0 1460 aa15.23■□□□□ 0.03
NSMCE2-213ENST00000523824 OSCARQ8IYS5 282 aa15.2■□□□□ 0.02
NSMCE2-213ENST00000523824 FANCD2Q9BXW9 1451 aa15.2■□□□□ 0.02
NSMCE2-213ENST00000523824 CFTRP13569 1480 aa15.14■□□□□ 0.01
NSMCE2-213ENST00000523824 RSF1Q96T23 1441 aaPredicted RBP15.07■□□□□ 0
NSMCE2-213ENST00000523824 URB2Q14146 1524 aaKnown RBP15.07■□□□□ 0
NSMCE2-213ENST00000523824 TOP2AP11388 1531 aaKnown RBP15.03■□□□□ -0
NSMCE2-213ENST00000523824 IFT140Q96RY7 1462 aa14.94□□□□□ -0.02
NSMCE2-213ENST00000523824 RIMBP3CA6NJZ7 1639 aa14.93□□□□□ -0.02
NSMCE2-213ENST00000523824 RIMBP3BA6NNM3 1639 aa14.93□□□□□ -0.02
NSMCE2-213ENST00000523824 RIMBP3Q9UFD9 1639 aa14.93□□□□□ -0.02
NSMCE2-213ENST00000523824 ZNF608Q9ULD9 1512 aaPredicted RBP14.92□□□□□ -0.02
NSMCE2-213ENST00000523824 CCDC88BA6NC98 1476 aa14.9□□□□□ -0.02
NSMCE2-213ENST00000523824 PRDM2Q13029 1718 aa14.88□□□□□ -0.03
NSMCE2-213ENST00000523824 ARHGEF11O15085 1522 aa14.87□□□□□ -0.03
NSMCE2-213ENST00000523824 CYB5RLQ6IPT4 315 aa14.87□□□□□ -0.03
NSMCE2-213ENST00000523824 SENP3Q9H4L4 574 aaPredicted RBP14.87□□□□□ -0.03
NSMCE2-213ENST00000523824 TOPBP1Q92547 1522 aa14.87□□□□□ -0.03
NSMCE2-213ENST00000523824 ABCC8Q09428 1581 aa14.85□□□□□ -0.03
NSMCE2-213ENST00000523824 FBLN2P98095 1184 aa14.81□□□□□ -0.04
NSMCE2-213ENST00000523824 TRHP20396 242 aaPredicted RBP14.8□□□□□ -0.04
NSMCE2-213ENST00000523824 AQRO60306 1485 aaKnown RBP eCLIP14.8□□□□□ -0.04
NSMCE2-213ENST00000523824 EIF4G3O43432 1585 aaKnown RBP14.8□□□□□ -0.04
NSMCE2-213ENST00000523824 DNMBPQ6XZF7 1577 aa14.78□□□□□ -0.04
NSMCE2-213ENST00000523824 TARBP1Q13395 1621 aaKnown RBP14.73□□□□□ -0.05
NSMCE2-213ENST00000523824 CHD1O14646 1710 aa14.72□□□□□ -0.05
NSMCE2-213ENST00000523824 ARAP1Q96P48 1450 aa14.71□□□□□ -0.05
NSMCE2-213ENST00000523824 POLA1P09884 1462 aaPredicted RBP14.7□□□□□ -0.06
NSMCE2-213ENST00000523824 PHF23Q9BUL5 403 aaPredicted RBP14.69□□□□□ -0.06
NSMCE2-213ENST00000523824 SOGA1O94964 1423 aa14.68□□□□□ -0.06
NSMCE2-213ENST00000523824 TDRD9Q8NDG6 1382 aaKnown RBP14.68□□□□□ -0.06
NSMCE2-213ENST00000523824 RAD54L2Q9Y4B4 1467 aa14.68□□□□□ -0.06
NSMCE2-213ENST00000523824 CHMP7Q8WUX9 453 aaPredicted RBP14.65□□□□□ -0.06
NSMCE2-213ENST00000523824 SNAPC4Q5SXM2 1469 aa14.61□□□□□ -0.07
NSMCE2-213ENST00000523824 FGD5Q6ZNL6 1462 aa14.58□□□□□ -0.08
NSMCE2-213ENST00000523824 CLASP1Q7Z460 1538 aa14.56□□□□□ -0.08
NSMCE2-213ENST00000523824 SYNJ1O43426 1573 aa14.56□□□□□ -0.08
NSMCE2-213ENST00000523824 GRIN2BQ13224 1484 aa14.56□□□□□ -0.08
NSMCE2-213ENST00000523824 MAGI1Q96QZ7 1491 aaPredicted RBP14.56□□□□□ -0.08
NSMCE2-213ENST00000523824 WDR97A6NE52 1622 aa14.55□□□□□ -0.08
NSMCE2-213ENST00000523824 CUX1P39880 1505 aa14.52□□□□□ -0.08
NSMCE2-213ENST00000523824 SYNJ2O15056 1496 aa14.52□□□□□ -0.08
NSMCE2-213ENST00000523824 GAPVD1Q14C86 1478 aa14.48□□□□□ -0.09
NSMCE2-213ENST00000523824 PBRM1Q86U86 1689 aa14.42□□□□□ -0.1
NSMCE2-213ENST00000523824 ABCA10Q8WWZ4 1543 aa14.4□□□□□ -0.1
NSMCE2-213ENST00000523824 ABCA5Q8WWZ7 1642 aa14.36□□□□□ -0.11
NSMCE2-213ENST00000523824 GRIN2AQ12879 1464 aa14.36□□□□□ -0.11
NSMCE2-213ENST00000523824 WRNQ14191 1432 aaPredicted RBP eCLIP14.34□□□□□ -0.11
NSMCE2-213ENST00000523824 ERCC6L2Q5T890 1561 aa14.33□□□□□ -0.12
NSMCE2-213ENST00000523824 SUPT5HO00267 1087 aaKnown RBP14.32□□□□□ -0.12
NSMCE2-213ENST00000523824 NUP160Q12769 1436 aa14.31□□□□□ -0.12
NSMCE2-213ENST00000523824 CEP170Q5SW79 1584 aa14.3□□□□□ -0.12
NSMCE2-213ENST00000523824 FHAD1B1AJZ9 1412 aa14.28□□□□□ -0.12
NSMCE2-213ENST00000523824 ADAMTS12P58397 1594 aa14.28□□□□□ -0.12
NSMCE2-213ENST00000523824 JPH4Q96JJ6 628 aa14.23□□□□□ -0.13
NSMCE2-213ENST00000523824 PRG4Q92954 1404 aaPredicted RBP14.23□□□□□ -0.13
NSMCE2-213ENST00000523824 SHROOM2Q13796 1616 aa14.23□□□□□ -0.13
NSMCE2-213ENST00000523824 TOP2BQ02880 1626 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms