RNA–Protein interactions for RNA: ENST00000523555.5

PABPC1-222, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 3

Gene PABPC1, Length 522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-222ENST00000523555 NISCHQ9Y2I1 1504 aa23.51■■□□□ 1.35
PABPC1-222ENST00000523555 CCDC180Q9P1Z9 1646 aa20.96■□□□□ 0.95
PABPC1-222ENST00000523555 ABCC9O60706 1549 aa20.63■□□□□ 0.89
PABPC1-222ENST00000523555 RB1CC1Q8TDY2 1594 aa19.74■□□□□ 0.75
PABPC1-222ENST00000523555 NACADO15069 1562 aa19.68■□□□□ 0.74
PABPC1-222ENST00000523555 DCAF8L2P0C7V8 631 aa19.63■□□□□ 0.73
PABPC1-222ENST00000523555 ZCCHC6Q5VYS8 1495 aaKnown RBP19.57■□□□□ 0.72
PABPC1-222ENST00000523555 MYO15BQ96JP2 1530 aa19.5■□□□□ 0.71
PABPC1-222ENST00000523555 UNC13AQ9UPW8 1703 aa19.48■□□□□ 0.71
PABPC1-222ENST00000523555 DCAF1Q9Y4B6 1507 aa19.4■□□□□ 0.7
PABPC1-222ENST00000523555 BICRAQ9NZM4 1560 aa19.24■□□□□ 0.67
PABPC1-222ENST00000523555 PABPN1Q86U42 306 aaKnown RBP eCLIP19.24■□□□□ 0.67
PABPC1-222ENST00000523555 SCRIBQ14160 1630 aa19.17■□□□□ 0.66
PABPC1-222ENST00000523555 DNAJC5BQ9UF47 199 aa19.05■□□□□ 0.64
PABPC1-222ENST00000523555 SHROOM4Q9ULL8 1493 aa18.86■□□□□ 0.61
PABPC1-222ENST00000523555 EIF4G1Q04637 1599 aaKnown RBP18.7■□□□□ 0.58
PABPC1-222ENST00000523555 CC2D2AQ9P2K1 1620 aa18.67■□□□□ 0.58
PABPC1-222ENST00000523555 CECR2Q9BXF3 1484 aa18.51■□□□□ 0.55
PABPC1-222ENST00000523555 SMARCA4P51532 1647 aa18.3■□□□□ 0.52
PABPC1-222ENST00000523555 BAZ1AQ9NRL2 1556 aaPredicted RBP18.2■□□□□ 0.5
PABPC1-222ENST00000523555 ATAD2BQ9ULI0 1458 aa18.19■□□□□ 0.5
PABPC1-222ENST00000523555 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
PABPC1-222ENST00000523555 NCAPD3P42695 1498 aa18.15■□□□□ 0.5
PABPC1-222ENST00000523555 SMARCA2P51531 1590 aa18.12■□□□□ 0.49
PABPC1-222ENST00000523555 PEG3Q9GZU2 1588 aa18.08■□□□□ 0.49
PABPC1-222ENST00000523555 HMGXB3Q12766 1538 aa18.08■□□□□ 0.48
PABPC1-222ENST00000523555 BAZ1BQ9UIG0 1483 aaKnown RBP18.01■□□□□ 0.47
PABPC1-222ENST00000523555 WIZO95785 1651 aa18■□□□□ 0.47
PABPC1-222ENST00000523555 RSF1Q96T23 1441 aaPredicted RBP17.87■□□□□ 0.45
PABPC1-222ENST00000523555 NESP48681 1621 aa17.86■□□□□ 0.45
PABPC1-222ENST00000523555 TOP2AP11388 1531 aaKnown RBP17.72■□□□□ 0.43
PABPC1-222ENST00000523555 LAMC3Q9Y6N6 1575 aa17.72■□□□□ 0.43
PABPC1-222ENST00000523555 ERCC6Q03468 1493 aa17.72■□□□□ 0.43
PABPC1-222ENST00000523555 KIF21AQ7Z4S6 1674 aa17.68■□□□□ 0.42
PABPC1-222ENST00000523555 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
PABPC1-222ENST00000523555 CADPSQ9ULU8 1353 aa17.61■□□□□ 0.41
PABPC1-222ENST00000523555 CUX2O14529 1486 aa17.56■□□□□ 0.4
PABPC1-222ENST00000523555 PDS5BQ9NTI5 1447 aa17.54■□□□□ 0.4
PABPC1-222ENST00000523555 CCDC88BA6NC98 1476 aa17.52■□□□□ 0.4
PABPC1-222ENST00000523555 CFTRP13569 1480 aa17.51■□□□□ 0.39
PABPC1-222ENST00000523555 PRDM2Q13029 1718 aa17.48■□□□□ 0.39
PABPC1-222ENST00000523555 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
PABPC1-222ENST00000523555 MRC2Q9UBG0 1479 aa17.42■□□□□ 0.38
PABPC1-222ENST00000523555 CEP164Q9UPV0 1460 aa17.42■□□□□ 0.38
PABPC1-222ENST00000523555 WDR62O43379 1518 aa17.4■□□□□ 0.38
PABPC1-222ENST00000523555 URB2Q14146 1524 aaKnown RBP17.32■□□□□ 0.36
PABPC1-222ENST00000523555 SUPT5HO00267 1087 aaKnown RBP17.32■□□□□ 0.36
PABPC1-222ENST00000523555 TOPBP1Q92547 1522 aa17.17■□□□□ 0.34
PABPC1-222ENST00000523555 DNAJC5Q9H3Z4 198 aa17.14■□□□□ 0.33
PABPC1-222ENST00000523555 DNMBPQ6XZF7 1577 aa17.14■□□□□ 0.33
PABPC1-222ENST00000523555 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
PABPC1-222ENST00000523555 ZNF608Q9ULD9 1512 aaPredicted RBP17.06■□□□□ 0.32
PABPC1-222ENST00000523555 CUX1P39880 1505 aa17.04■□□□□ 0.32
PABPC1-222ENST00000523555 IFT140Q96RY7 1462 aa17.04■□□□□ 0.32
PABPC1-222ENST00000523555 TARBP1Q13395 1621 aaKnown RBP17.03■□□□□ 0.32
PABPC1-222ENST00000523555 POLA1P09884 1462 aaPredicted RBP17.02■□□□□ 0.32
PABPC1-222ENST00000523555 EIF4G3O43432 1585 aaKnown RBP17■□□□□ 0.31
PABPC1-222ENST00000523555 RAD54L2Q9Y4B4 1467 aa16.98■□□□□ 0.31
PABPC1-222ENST00000523555 FGD5Q6ZNL6 1462 aa16.97■□□□□ 0.31
PABPC1-222ENST00000523555 AQRO60306 1485 aaKnown RBP eCLIP16.92■□□□□ 0.3
PABPC1-222ENST00000523555 WDR97A6NE52 1622 aa16.91■□□□□ 0.3
PABPC1-222ENST00000523555 SOGA1O94964 1423 aa16.9■□□□□ 0.3
PABPC1-222ENST00000523555 SYNJ1O43426 1573 aa16.88■□□□□ 0.29
PABPC1-222ENST00000523555 BIVM-ERCC5R4GMW8 1640 aa16.87■□□□□ 0.29
PABPC1-222ENST00000523555 TDRD9Q8NDG6 1382 aaKnown RBP16.85■□□□□ 0.29
PABPC1-222ENST00000523555 CHD1O14646 1710 aa16.84■□□□□ 0.29
PABPC1-222ENST00000523555 TOP2BQ02880 1626 aa16.84■□□□□ 0.29
PABPC1-222ENST00000523555 WRNQ14191 1432 aaPredicted RBP eCLIP16.82■□□□□ 0.28
PABPC1-222ENST00000523555 PBRM1Q86U86 1689 aa16.8■□□□□ 0.28
PABPC1-222ENST00000523555 ABCA5Q8WWZ7 1642 aa16.78■□□□□ 0.28
PABPC1-222ENST00000523555 ABCA10Q8WWZ4 1543 aa16.77■□□□□ 0.28
PABPC1-222ENST00000523555 OSCARQ8IYS5 282 aa16.77■□□□□ 0.28
PABPC1-222ENST00000523555 SNAPC4Q5SXM2 1469 aa16.76■□□□□ 0.27
PABPC1-222ENST00000523555 GRIN2BQ13224 1484 aa16.72■□□□□ 0.27
PABPC1-222ENST00000523555 GAPVD1Q14C86 1478 aa16.72■□□□□ 0.27
PABPC1-222ENST00000523555 MAGI1Q96QZ7 1491 aaPredicted RBP16.67■□□□□ 0.26
PABPC1-222ENST00000523555 FBLN2P98095 1184 aa16.67■□□□□ 0.26
PABPC1-222ENST00000523555 RIMBP3CA6NJZ7 1639 aa16.66■□□□□ 0.26
PABPC1-222ENST00000523555 RIMBP3BA6NNM3 1639 aa16.66■□□□□ 0.26
PABPC1-222ENST00000523555 RIMBP3Q9UFD9 1639 aa16.66■□□□□ 0.26
PABPC1-222ENST00000523555 SYNJ2O15056 1496 aa16.63■□□□□ 0.25
PABPC1-222ENST00000523555 ADAMTS12P58397 1594 aa16.61■□□□□ 0.25
PABPC1-222ENST00000523555 ARHGEF11O15085 1522 aa16.6■□□□□ 0.25
PABPC1-222ENST00000523555 CLASP1Q7Z460 1538 aa16.6■□□□□ 0.25
PABPC1-222ENST00000523555 CHMP7Q8WUX9 453 aaPredicted RBP16.58■□□□□ 0.24
PABPC1-222ENST00000523555 TRIM41Q8WV44 630 aa16.57■□□□□ 0.24
PABPC1-222ENST00000523555 ERICH3Q5RHP9 1530 aa16.56■□□□□ 0.24
PABPC1-222ENST00000523555 GRIN2AQ12879 1464 aa16.53■□□□□ 0.24
PABPC1-222ENST00000523555 CEP170Q5SW79 1584 aa16.51■□□□□ 0.23
PABPC1-222ENST00000523555 FHAD1B1AJZ9 1412 aa16.5■□□□□ 0.23
PABPC1-222ENST00000523555 ARAP1Q96P48 1450 aa16.48■□□□□ 0.23
PABPC1-222ENST00000523555 NUP160Q12769 1436 aa16.45■□□□□ 0.22
PABPC1-222ENST00000523555 KIF27Q86VH2 1401 aa16.44■□□□□ 0.22
PABPC1-222ENST00000523555 ERCC6L2Q5T890 1561 aa16.43■□□□□ 0.22
PABPC1-222ENST00000523555 IGF1RP08069 1367 aa16.42■□□□□ 0.22
PABPC1-222ENST00000523555 CUL7Q14999 1698 aa16.41■□□□□ 0.22
PABPC1-222ENST00000523555 RUSC2Q8N2Y8 1516 aa16.4■□□□□ 0.22
PABPC1-222ENST00000523555 CYB5RLQ6IPT4 315 aa16.4■□□□□ 0.22
PABPC1-222ENST00000523555 SHROOM2Q13796 1616 aa16.4■□□□□ 0.22
PABPC1-222ENST00000523555 CARMIL1Q5VZK9 1371 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms