RNA–Protein interactions for RNA: ENST00000523190.5

PVT1-217, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 443 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-217ENST00000523190 NISCHQ9Y2I1 1504 aa15.47■□□□□ 0.07
PVT1-217ENST00000523190 CHIC1Q5VXU3 224 aa14.01□□□□□ -0.17
PVT1-217ENST00000523190 AEBP2Q6ZN18 517 aaPredicted RBP13.62□□□□□ -0.23
PVT1-217ENST00000523190 CCDC180Q9P1Z9 1646 aa13.54□□□□□ -0.24
PVT1-217ENST00000523190 ZCCHC6Q5VYS8 1495 aaKnown RBP12.99□□□□□ -0.33
PVT1-217ENST00000523190 ABCC9O60706 1549 aa12.9□□□□□ -0.34
PVT1-217ENST00000523190 DCAF8L2P0C7V8 631 aa12.79□□□□□ -0.36
PVT1-217ENST00000523190 DCAF1Q9Y4B6 1507 aa12.78□□□□□ -0.36
PVT1-217ENST00000523190 MYO15BQ96JP2 1530 aa12.65□□□□□ -0.38
PVT1-217ENST00000523190 NACADO15069 1562 aa12.62□□□□□ -0.39
PVT1-217ENST00000523190 SHROOM4Q9ULL8 1493 aa12.59□□□□□ -0.39
PVT1-217ENST00000523190 RB1CC1Q8TDY2 1594 aa12.54□□□□□ -0.4
PVT1-217ENST00000523190 SCRIBQ14160 1630 aa12.46□□□□□ -0.41
PVT1-217ENST00000523190 UNC13AQ9UPW8 1703 aa12.29□□□□□ -0.44
PVT1-217ENST00000523190 PHF23Q9BUL5 403 aaPredicted RBP12.22□□□□□ -0.45
PVT1-217ENST00000523190 BICRAQ9NZM4 1560 aa12.18□□□□□ -0.46
PVT1-217ENST00000523190 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
PVT1-217ENST00000523190 CECR2Q9BXF3 1484 aa12.04□□□□□ -0.48
PVT1-217ENST00000523190 SUPT5HO00267 1087 aaKnown RBP12.03□□□□□ -0.48
PVT1-217ENST00000523190 MROH2BQ7Z745 1585 aa11.96□□□□□ -0.49
PVT1-217ENST00000523190 RSF1Q96T23 1441 aaPredicted RBP11.96□□□□□ -0.49
PVT1-217ENST00000523190 BAZ1AQ9NRL2 1556 aaPredicted RBP11.95□□□□□ -0.5
PVT1-217ENST00000523190 SMARCA4P51532 1647 aa11.93□□□□□ -0.5
PVT1-217ENST00000523190 WIZO95785 1651 aa11.86□□□□□ -0.51
PVT1-217ENST00000523190 EIF4G1Q04637 1599 aaKnown RBP11.82□□□□□ -0.52
PVT1-217ENST00000523190 PEG3Q9GZU2 1588 aa11.76□□□□□ -0.53
PVT1-217ENST00000523190 ATAD2BQ9ULI0 1458 aa11.74□□□□□ -0.53
PVT1-217ENST00000523190 TOP2AP11388 1531 aaKnown RBP11.74□□□□□ -0.53
PVT1-217ENST00000523190 SMARCA2P51531 1590 aa11.73□□□□□ -0.53
PVT1-217ENST00000523190 SENP3Q9H4L4 574 aaPredicted RBP11.73□□□□□ -0.53
PVT1-217ENST00000523190 PLPPR3Q6T4P5 718 aa11.72□□□□□ -0.53
PVT1-217ENST00000523190 BAZ1BQ9UIG0 1483 aaKnown RBP11.68□□□□□ -0.54
PVT1-217ENST00000523190 CC2D2AQ9P2K1 1620 aa11.66□□□□□ -0.54
PVT1-217ENST00000523190 NCAPD3P42695 1498 aa11.64□□□□□ -0.55
PVT1-217ENST00000523190 HMGXB3Q12766 1538 aa11.64□□□□□ -0.55
PVT1-217ENST00000523190 CCDC88BA6NC98 1476 aa11.6□□□□□ -0.55
PVT1-217ENST00000523190 DNAJC5BQ9UF47 199 aa11.43□□□□□ -0.58
PVT1-217ENST00000523190 CFTRP13569 1480 aa11.36□□□□□ -0.59
PVT1-217ENST00000523190 ABCC8Q09428 1581 aa11.36□□□□□ -0.59
PVT1-217ENST00000523190 CADPSQ9ULU8 1353 aa11.34□□□□□ -0.59
PVT1-217ENST00000523190 PRDM2Q13029 1718 aa11.32□□□□□ -0.6
PVT1-217ENST00000523190 TRIM41Q8WV44 630 aa11.3□□□□□ -0.6
PVT1-217ENST00000523190 NESP48681 1621 aa11.3□□□□□ -0.6
PVT1-217ENST00000523190 LAMC3Q9Y6N6 1575 aa11.28□□□□□ -0.6
PVT1-217ENST00000523190 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
PVT1-217ENST00000523190 SYNJ1O43426 1573 aa11.24□□□□□ -0.61
PVT1-217ENST00000523190 FANCD2Q9BXW9 1451 aa11.23□□□□□ -0.61
PVT1-217ENST00000523190 CUX1P39880 1505 aa11.19□□□□□ -0.62
PVT1-217ENST00000523190 TOP2BQ02880 1626 aa11.19□□□□□ -0.62
PVT1-217ENST00000523190 BIVM-ERCC5R4GMW8 1640 aa11.19□□□□□ -0.62
PVT1-217ENST00000523190 CEP164Q9UPV0 1460 aa11.18□□□□□ -0.62
PVT1-217ENST00000523190 PDS5BQ9NTI5 1447 aa11.18□□□□□ -0.62
PVT1-217ENST00000523190 KIF21AQ7Z4S6 1674 aa11.17□□□□□ -0.62
PVT1-217ENST00000523190 DNMBPQ6XZF7 1577 aa11.12□□□□□ -0.63
PVT1-217ENST00000523190 FAM9AQ8IZU1 332 aaPredicted RBP11.12□□□□□ -0.63
PVT1-217ENST00000523190 SOGA1O94964 1423 aa11.1□□□□□ -0.63
PVT1-217ENST00000523190 URB2Q14146 1524 aaKnown RBP11.1□□□□□ -0.63
PVT1-217ENST00000523190 TOPBP1Q92547 1522 aa11.1□□□□□ -0.63
PVT1-217ENST00000523190 FGD5Q6ZNL6 1462 aa11.09□□□□□ -0.63
PVT1-217ENST00000523190 RUSC2Q8N2Y8 1516 aa11.08□□□□□ -0.64
PVT1-217ENST00000523190 MRC2Q9UBG0 1479 aa11.06□□□□□ -0.64
PVT1-217ENST00000523190 ERCC6Q03468 1493 aa11.06□□□□□ -0.64
PVT1-217ENST00000523190 EEA1Q15075 1411 aa11.04□□□□□ -0.64
PVT1-217ENST00000523190 POLA1P09884 1462 aaPredicted RBP11.04□□□□□ -0.64
PVT1-217ENST00000523190 THOC2Q8NI27 1593 aaKnown RBP11.02□□□□□ -0.65
PVT1-217ENST00000523190 RAD54L2Q9Y4B4 1467 aa11.01□□□□□ -0.65
PVT1-217ENST00000523190 WDR62O43379 1518 aa11.01□□□□□ -0.65
PVT1-217ENST00000523190 LOC105371045A0A1W2PR82 267 aa11.01□□□□□ -0.65
PVT1-217ENST00000523190 CUX2O14529 1486 aa11□□□□□ -0.65
PVT1-217ENST00000523190 KIF27Q86VH2 1401 aa10.99□□□□□ -0.65
PVT1-217ENST00000523190 CSRNP3Q8WYN3 585 aa10.98□□□□□ -0.65
PVT1-217ENST00000523190 EHMT2Q96KQ7 1210 aa10.98□□□□□ -0.65
PVT1-217ENST00000523190 ABCA10Q8WWZ4 1543 aa10.97□□□□□ -0.65
PVT1-217ENST00000523190 WDR97A6NE52 1622 aa10.97□□□□□ -0.65
PVT1-217ENST00000523190 TARBP1Q13395 1621 aaKnown RBP10.94□□□□□ -0.66
PVT1-217ENST00000523190 KIF21BO75037 1637 aa10.93□□□□□ -0.66
PVT1-217ENST00000523190 GOLGA3Q08378 1498 aa10.91□□□□□ -0.66
PVT1-217ENST00000523190 ABCA5Q8WWZ7 1642 aa10.91□□□□□ -0.66
PVT1-217ENST00000523190 IFT140Q96RY7 1462 aa10.9□□□□□ -0.66
PVT1-217ENST00000523190 TDRD9Q8NDG6 1382 aaKnown RBP10.9□□□□□ -0.67
PVT1-217ENST00000523190 PRXQ9BXM0 1461 aa10.88□□□□□ -0.67
PVT1-217ENST00000523190 RAPGEF2Q9Y4G8 1499 aa10.88□□□□□ -0.67
PVT1-217ENST00000523190 IGF1RP08069 1367 aa10.88□□□□□ -0.67
PVT1-217ENST00000523190 GAPVD1Q14C86 1478 aa10.87□□□□□ -0.67
PVT1-217ENST00000523190 ERICH3Q5RHP9 1530 aa10.86□□□□□ -0.67
PVT1-217ENST00000523190 ZNF608Q9ULD9 1512 aaPredicted RBP10.85□□□□□ -0.67
PVT1-217ENST00000523190 AQRO60306 1485 aaKnown RBP eCLIP10.85□□□□□ -0.679e-7■■■■■ 33.4
PVT1-217ENST00000523190 UBTFP17480 764 aaKnown RBP10.84□□□□□ -0.67
PVT1-217ENST00000523190 CARMIL1Q5VZK9 1371 aa10.84□□□□□ -0.67
PVT1-217ENST00000523190 TNIKQ9UKE5 1360 aa10.84□□□□□ -0.67
PVT1-217ENST00000523190 PBRM1Q86U86 1689 aa10.84□□□□□ -0.67
PVT1-217ENST00000523190 CUL7Q14999 1698 aa10.83□□□□□ -0.68
PVT1-217ENST00000523190 EIF4G3O43432 1585 aaKnown RBP10.83□□□□□ -0.68
PVT1-217ENST00000523190 GRIN2BQ13224 1484 aa10.8□□□□□ -0.68
PVT1-217ENST00000523190 CEP162Q5TB80 1403 aa10.79□□□□□ -0.68
PVT1-217ENST00000523190 ADAMTS12P58397 1594 aa10.78□□□□□ -0.68
PVT1-217ENST00000523190 SNAPC4Q5SXM2 1469 aa10.76□□□□□ -0.69
PVT1-217ENST00000523190 FHAD1B1AJZ9 1412 aa10.75□□□□□ -0.69
PVT1-217ENST00000523190 CLIP1P30622 1438 aa10.73□□□□□ -0.69
PVT1-217ENST00000523190 RANGAP1P46060 587 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms