RNA–Protein interactions for RNA: ENST00000521569.1

SPARC-204, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 2

Gene SPARC, Length 602 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-204ENST00000521569 NISCHQ9Y2I1 1504 aa21.63■■□□□ 1.05
SPARC-204ENST00000521569 ABCC9O60706 1549 aa19.46■□□□□ 0.71
SPARC-204ENST00000521569 CCDC180Q9P1Z9 1646 aa19.4■□□□□ 0.7
SPARC-204ENST00000521569 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
SPARC-204ENST00000521569 DNAJC5BQ9UF47 199 aa18.47■□□□□ 0.55
SPARC-204ENST00000521569 NACADO15069 1562 aa18.46■□□□□ 0.55
SPARC-204ENST00000521569 MYO15BQ96JP2 1530 aa18.28■□□□□ 0.52
SPARC-204ENST00000521569 DCAF8L2P0C7V8 631 aa18.16■□□□□ 0.5
SPARC-204ENST00000521569 PABPN1Q86U42 306 aaKnown RBP eCLIP18.13■□□□□ 0.49
SPARC-204ENST00000521569 BICRAQ9NZM4 1560 aa18■□□□□ 0.47
SPARC-204ENST00000521569 DCAF1Q9Y4B6 1507 aa17.97■□□□□ 0.47
SPARC-204ENST00000521569 UNC13AQ9UPW8 1703 aa17.93■□□□□ 0.46
SPARC-204ENST00000521569 SHROOM4Q9ULL8 1493 aa17.93■□□□□ 0.46
SPARC-204ENST00000521569 ZCCHC6Q5VYS8 1495 aaKnown RBP17.9■□□□□ 0.46
SPARC-204ENST00000521569 CECR2Q9BXF3 1484 aa17.63■□□□□ 0.41
SPARC-204ENST00000521569 CC2D2AQ9P2K1 1620 aa17.6■□□□□ 0.41
SPARC-204ENST00000521569 EIF4G1Q04637 1599 aaKnown RBP17.57■□□□□ 0.4
SPARC-204ENST00000521569 SCRIBQ14160 1630 aa17.55■□□□□ 0.4
SPARC-204ENST00000521569 DNAJC5Q9H3Z4 198 aa17.15■□□□□ 0.34
SPARC-204ENST00000521569 NCAPD3P42695 1498 aa17.11■□□□□ 0.33
SPARC-204ENST00000521569 CUX2O14529 1486 aa16.98■□□□□ 0.31
SPARC-204ENST00000521569 ATAD2BQ9ULI0 1458 aa16.97■□□□□ 0.31
SPARC-204ENST00000521569 HMGXB3Q12766 1538 aa16.9■□□□□ 0.3
SPARC-204ENST00000521569 SMARCA2P51531 1590 aa16.89■□□□□ 0.3
SPARC-204ENST00000521569 ERCC6Q03468 1493 aa16.84■□□□□ 0.29
SPARC-204ENST00000521569 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
SPARC-204ENST00000521569 PEG3Q9GZU2 1588 aa16.78■□□□□ 0.28
SPARC-204ENST00000521569 BAZ1AQ9NRL2 1556 aaPredicted RBP16.78■□□□□ 0.28
SPARC-204ENST00000521569 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
SPARC-204ENST00000521569 NESP48681 1621 aa16.69■□□□□ 0.26
SPARC-204ENST00000521569 LAMC3Q9Y6N6 1575 aa16.64■□□□□ 0.25
SPARC-204ENST00000521569 PDS5BQ9NTI5 1447 aa16.61■□□□□ 0.25
SPARC-204ENST00000521569 MROH2BQ7Z745 1585 aa16.6■□□□□ 0.25
SPARC-204ENST00000521569 THOC2Q8NI27 1593 aaKnown RBP16.56■□□□□ 0.24
SPARC-204ENST00000521569 CADPSQ9ULU8 1353 aa16.55■□□□□ 0.24
SPARC-204ENST00000521569 MRC2Q9UBG0 1479 aa16.41■□□□□ 0.22
SPARC-204ENST00000521569 WDR62O43379 1518 aa16.38■□□□□ 0.21
SPARC-204ENST00000521569 KIF21AQ7Z4S6 1674 aa16.37■□□□□ 0.21
SPARC-204ENST00000521569 CFTRP13569 1480 aa16.33■□□□□ 0.2
SPARC-204ENST00000521569 WIZO95785 1651 aa16.3■□□□□ 0.2
SPARC-204ENST00000521569 CEP164Q9UPV0 1460 aa16.29■□□□□ 0.2
SPARC-204ENST00000521569 RSF1Q96T23 1441 aaPredicted RBP16.28■□□□□ 0.2
SPARC-204ENST00000521569 FANCD2Q9BXW9 1451 aa16.28■□□□□ 0.2
SPARC-204ENST00000521569 TOP2AP11388 1531 aaKnown RBP16.2■□□□□ 0.18
SPARC-204ENST00000521569 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
SPARC-204ENST00000521569 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.17
SPARC-204ENST00000521569 TRIM41Q8WV44 630 aa16.13■□□□□ 0.17
SPARC-204ENST00000521569 CCDC88BA6NC98 1476 aa16.03■□□□□ 0.16
SPARC-204ENST00000521569 IFT140Q96RY7 1462 aa16.03■□□□□ 0.16
SPARC-204ENST00000521569 ABCC8Q09428 1581 aa16■□□□□ 0.15
SPARC-204ENST00000521569 TOPBP1Q92547 1522 aa15.95■□□□□ 0.14
SPARC-204ENST00000521569 ZNF608Q9ULD9 1512 aaPredicted RBP15.94■□□□□ 0.14
SPARC-204ENST00000521569 PRDM2Q13029 1718 aa15.92■□□□□ 0.14
SPARC-204ENST00000521569 DNMBPQ6XZF7 1577 aa15.87■□□□□ 0.13
SPARC-204ENST00000521569 ARHGEF11O15085 1522 aa15.84■□□□□ 0.13
SPARC-204ENST00000521569 RIMBP3CA6NJZ7 1639 aa15.83■□□□□ 0.12
SPARC-204ENST00000521569 RIMBP3BA6NNM3 1639 aa15.83■□□□□ 0.12
SPARC-204ENST00000521569 RIMBP3Q9UFD9 1639 aa15.83■□□□□ 0.12
SPARC-204ENST00000521569 TARBP1Q13395 1621 aaKnown RBP15.8■□□□□ 0.12
SPARC-204ENST00000521569 AQRO60306 1485 aaKnown RBP eCLIP15.79■□□□□ 0.12
SPARC-204ENST00000521569 EIF4G3O43432 1585 aaKnown RBP15.79■□□□□ 0.12
SPARC-204ENST00000521569 POLA1P09884 1462 aaPredicted RBP15.78■□□□□ 0.12
SPARC-204ENST00000521569 SOGA1O94964 1423 aa15.73■□□□□ 0.11
SPARC-204ENST00000521569 WDR97A6NE52 1622 aa15.72■□□□□ 0.11
SPARC-204ENST00000521569 CYB5RLQ6IPT4 315 aa15.72■□□□□ 0.11
SPARC-204ENST00000521569 ARAP1Q96P48 1450 aa15.68■□□□□ 0.1
SPARC-204ENST00000521569 RAD54L2Q9Y4B4 1467 aa15.68■□□□□ 0.1
SPARC-204ENST00000521569 TDRD9Q8NDG6 1382 aaKnown RBP15.68■□□□□ 0.1
SPARC-204ENST00000521569 FBLN2P98095 1184 aa15.65■□□□□ 0.1
SPARC-204ENST00000521569 MAGI1Q96QZ7 1491 aaPredicted RBP15.65■□□□□ 0.1
SPARC-204ENST00000521569 FGD5Q6ZNL6 1462 aa15.63■□□□□ 0.09
SPARC-204ENST00000521569 GRIN2BQ13224 1484 aa15.62■□□□□ 0.09
SPARC-204ENST00000521569 CHD1O14646 1710 aa15.61■□□□□ 0.09
SPARC-204ENST00000521569 CHMP7Q8WUX9 453 aaPredicted RBP15.61■□□□□ 0.09
SPARC-204ENST00000521569 CUX1P39880 1505 aa15.61■□□□□ 0.09
SPARC-204ENST00000521569 SNAPC4Q5SXM2 1469 aa15.6■□□□□ 0.09
SPARC-204ENST00000521569 CLASP1Q7Z460 1538 aa15.6■□□□□ 0.09
SPARC-204ENST00000521569 SYNJ2O15056 1496 aa15.58■□□□□ 0.08
SPARC-204ENST00000521569 SYNJ1O43426 1573 aa15.55■□□□□ 0.08
SPARC-204ENST00000521569 ABCA10Q8WWZ4 1543 aa15.53■□□□□ 0.08
SPARC-204ENST00000521569 TRHP20396 242 aaPredicted RBP15.53■□□□□ 0.08
SPARC-204ENST00000521569 GAPVD1Q14C86 1478 aa15.52■□□□□ 0.08
SPARC-204ENST00000521569 WRNQ14191 1432 aaPredicted RBP eCLIP15.45■□□□□ 0.06
SPARC-204ENST00000521569 ABCA5Q8WWZ7 1642 aa15.43■□□□□ 0.06
SPARC-204ENST00000521569 NUP160Q12769 1436 aa15.42■□□□□ 0.06
SPARC-204ENST00000521569 GRIN2AQ12879 1464 aa15.4■□□□□ 0.06
SPARC-204ENST00000521569 FHAD1B1AJZ9 1412 aa15.36■□□□□ 0.05
SPARC-204ENST00000521569 PBRM1Q86U86 1689 aa15.36■□□□□ 0.05
SPARC-204ENST00000521569 ERICH3Q5RHP9 1530 aa15.33■□□□□ 0.05
SPARC-204ENST00000521569 TOP2BQ02880 1626 aa15.33■□□□□ 0.04
SPARC-204ENST00000521569 SUPT5HO00267 1087 aaKnown RBP15.31■□□□□ 0.04
SPARC-204ENST00000521569 ADAMTS12P58397 1594 aa15.31■□□□□ 0.04
SPARC-204ENST00000521569 BIVM-ERCC5R4GMW8 1640 aa15.29■□□□□ 0.04
SPARC-204ENST00000521569 CEP170Q5SW79 1584 aa15.29■□□□□ 0.04
SPARC-204ENST00000521569 SHROOM2Q13796 1616 aa15.28■□□□□ 0.04
SPARC-204ENST00000521569 ERCC6L2Q5T890 1561 aa15.26■□□□□ 0.03
SPARC-204ENST00000521569 JPH4Q96JJ6 628 aa15.25■□□□□ 0.03
SPARC-204ENST00000521569 PRG4Q92954 1404 aaPredicted RBP15.2■□□□□ 0.02
SPARC-204ENST00000521569 AEBP2Q6ZN18 517 aaPredicted RBP15.19■□□□□ 0.02
SPARC-204ENST00000521569 IGF1RP08069 1367 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms