RNA–Protein interactions for RNA: ENST00000521550.5

SPIDR-214, Transcript of scaffold protein involved in DNA repair, humanhuman

TSL 2

Gene SPIDR, Length 1,849 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-214ENST00000521550 NISCHQ9Y2I1 1504 aa31.16■■■□□ 2.58
SPIDR-214ENST00000521550 CCDC180Q9P1Z9 1646 aa27.87■■■□□ 2.05
SPIDR-214ENST00000521550 ABCC9O60706 1549 aa27.58■■■□□ 2
SPIDR-214ENST00000521550 RB1CC1Q8TDY2 1594 aa26.39■■□□□ 1.81
SPIDR-214ENST00000521550 NACADO15069 1562 aa26.27■■□□□ 1.8
SPIDR-214ENST00000521550 DCAF8L2P0C7V8 631 aa26.22■■□□□ 1.79
SPIDR-214ENST00000521550 MYO15BQ96JP2 1530 aa25.99■■□□□ 1.75
SPIDR-214ENST00000521550 ZCCHC6Q5VYS8 1495 aaKnown RBP25.88■■□□□ 1.73
SPIDR-214ENST00000521550 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
SPIDR-214ENST00000521550 DCAF1Q9Y4B6 1507 aa25.76■■□□□ 1.71
SPIDR-214ENST00000521550 PABPN1Q86U42 306 aaKnown RBP eCLIP25.71■■□□□ 1.71
SPIDR-214ENST00000521550 DNAJC5BQ9UF47 199 aa25.58■■□□□ 1.69
SPIDR-214ENST00000521550 BICRAQ9NZM4 1560 aa25.58■■□□□ 1.69
SPIDR-214ENST00000521550 SCRIBQ14160 1630 aa25.4■■□□□ 1.66
SPIDR-214ENST00000521550 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
SPIDR-214ENST00000521550 EIF4G1Q04637 1599 aaKnown RBP24.95■■□□□ 1.58
SPIDR-214ENST00000521550 CC2D2AQ9P2K1 1620 aa24.94■■□□□ 1.58
SPIDR-214ENST00000521550 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
SPIDR-214ENST00000521550 SUPT5HO00267 1087 aaKnown RBP24.38■■□□□ 1.49
SPIDR-214ENST00000521550 SMARCA4P51532 1647 aa24.26■■□□□ 1.47
SPIDR-214ENST00000521550 NCAPD3P42695 1498 aa24.23■■□□□ 1.47
SPIDR-214ENST00000521550 ATAD2BQ9ULI0 1458 aa24.2■■□□□ 1.46
SPIDR-214ENST00000521550 BAZ1AQ9NRL2 1556 aaPredicted RBP24.19■■□□□ 1.46
SPIDR-214ENST00000521550 SMARCA2P51531 1590 aa24.17■■□□□ 1.46
SPIDR-214ENST00000521550 HMGXB3Q12766 1538 aa24.09■■□□□ 1.45
SPIDR-214ENST00000521550 PEG3Q9GZU2 1588 aa24.02■■□□□ 1.44
SPIDR-214ENST00000521550 MROH2BQ7Z745 1585 aa24.01■■□□□ 1.43
SPIDR-214ENST00000521550 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
SPIDR-214ENST00000521550 ERCC6Q03468 1493 aa23.81■■□□□ 1.4
SPIDR-214ENST00000521550 NESP48681 1621 aa23.76■■□□□ 1.39
SPIDR-214ENST00000521550 WIZO95785 1651 aa23.76■■□□□ 1.39
SPIDR-214ENST00000521550 LAMC3Q9Y6N6 1575 aa23.67■■□□□ 1.38
SPIDR-214ENST00000521550 CUX2O14529 1486 aa23.65■■□□□ 1.38
SPIDR-214ENST00000521550 RSF1Q96T23 1441 aaPredicted RBP23.61■■□□□ 1.37
SPIDR-214ENST00000521550 CHIC1Q5VXU3 224 aa23.59■■□□□ 1.37
SPIDR-214ENST00000521550 PDS5BQ9NTI5 1447 aa23.52■■□□□ 1.36
SPIDR-214ENST00000521550 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
SPIDR-214ENST00000521550 KIF21AQ7Z4S6 1674 aa23.5■■□□□ 1.35
SPIDR-214ENST00000521550 THOC2Q8NI27 1593 aaKnown RBP23.47■■□□□ 1.35
SPIDR-214ENST00000521550 TOP2AP11388 1531 aaKnown RBP23.46■■□□□ 1.35
SPIDR-214ENST00000521550 DNAJC5Q9H3Z4 198 aa23.31■■□□□ 1.32
SPIDR-214ENST00000521550 CFTRP13569 1480 aa23.3■■□□□ 1.32
SPIDR-214ENST00000521550 MRC2Q9UBG0 1479 aa23.28■■□□□ 1.32
SPIDR-214ENST00000521550 CEP164Q9UPV0 1460 aa23.26■■□□□ 1.31
SPIDR-214ENST00000521550 FANCD2Q9BXW9 1451 aa23.25■■□□□ 1.31
SPIDR-214ENST00000521550 WDR62O43379 1518 aa23.21■■□□□ 1.31
SPIDR-214ENST00000521550 CCDC88BA6NC98 1476 aa23.19■■□□□ 1.3
SPIDR-214ENST00000521550 PRDM2Q13029 1718 aa23.15■■□□□ 1.3
SPIDR-214ENST00000521550 URB2Q14146 1524 aaKnown RBP23.03■■□□□ 1.28
SPIDR-214ENST00000521550 TRIM41Q8WV44 630 aa22.94■■□□□ 1.26
SPIDR-214ENST00000521550 TOPBP1Q92547 1522 aa22.84■■□□□ 1.25
SPIDR-214ENST00000521550 ABCC8Q09428 1581 aa22.83■■□□□ 1.25
SPIDR-214ENST00000521550 DNMBPQ6XZF7 1577 aa22.79■■□□□ 1.24
SPIDR-214ENST00000521550 IFT140Q96RY7 1462 aa22.77■■□□□ 1.24
SPIDR-214ENST00000521550 ZNF608Q9ULD9 1512 aaPredicted RBP22.7■■□□□ 1.22
SPIDR-214ENST00000521550 LOC105371045A0A1W2PR82 267 aa22.69■■□□□ 1.22
SPIDR-214ENST00000521550 OSCARQ8IYS5 282 aa22.64■■□□□ 1.21
SPIDR-214ENST00000521550 POLA1P09884 1462 aaPredicted RBP22.63■■□□□ 1.21
SPIDR-214ENST00000521550 TARBP1Q13395 1621 aaKnown RBP22.62■■□□□ 1.21
SPIDR-214ENST00000521550 EIF4G3O43432 1585 aaKnown RBP22.61■■□□□ 1.21
SPIDR-214ENST00000521550 CUX1P39880 1505 aa22.54■■□□□ 1.2
SPIDR-214ENST00000521550 AQRO60306 1485 aaKnown RBP eCLIP22.54■■□□□ 1.2
SPIDR-214ENST00000521550 SOGA1O94964 1423 aa22.53■■□□□ 1.2
SPIDR-214ENST00000521550 FGD5Q6ZNL6 1462 aa22.53■■□□□ 1.2
SPIDR-214ENST00000521550 RAD54L2Q9Y4B4 1467 aa22.53■■□□□ 1.2
SPIDR-214ENST00000521550 FAM9AQ8IZU1 332 aaPredicted RBP22.48■■□□□ 1.19
SPIDR-214ENST00000521550 TDRD9Q8NDG6 1382 aaKnown RBP22.44■■□□□ 1.18
SPIDR-214ENST00000521550 WDR97A6NE52 1622 aa22.42■■□□□ 1.18
SPIDR-214ENST00000521550 CHD1O14646 1710 aa22.41■■□□□ 1.18
SPIDR-214ENST00000521550 FBLN2P98095 1184 aa22.36■■□□□ 1.17
SPIDR-214ENST00000521550 PCGF6Q9BYE7 350 aa22.35■■□□□ 1.17
SPIDR-214ENST00000521550 SNAPC4Q5SXM2 1469 aa22.31■■□□□ 1.16
SPIDR-214ENST00000521550 RIMBP3CA6NJZ7 1639 aa22.3■■□□□ 1.16
SPIDR-214ENST00000521550 RIMBP3BA6NNM3 1639 aa22.3■■□□□ 1.16
SPIDR-214ENST00000521550 RIMBP3Q9UFD9 1639 aa22.3■■□□□ 1.16
SPIDR-214ENST00000521550 GRIN2BQ13224 1484 aa22.3■■□□□ 1.16
SPIDR-214ENST00000521550 WRNQ14191 1432 aaPredicted RBP eCLIP22.28■■□□□ 1.16
SPIDR-214ENST00000521550 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
SPIDR-214ENST00000521550 ABCA10Q8WWZ4 1543 aa22.28■■□□□ 1.16
SPIDR-214ENST00000521550 EEA1Q15075 1411 aa22.28■■□□□ 1.16
SPIDR-214ENST00000521550 BIVM-ERCC5R4GMW8 1640 aa22.28■■□□□ 1.16
SPIDR-214ENST00000521550 TOP2BQ02880 1626 aa22.27■■□□□ 1.16
SPIDR-214ENST00000521550 PBRM1Q86U86 1689 aa22.27■■□□□ 1.16
SPIDR-214ENST00000521550 GAPVD1Q14C86 1478 aa22.27■■□□□ 1.15
SPIDR-214ENST00000521550 ARHGEF11O15085 1522 aa22.26■■□□□ 1.15
SPIDR-214ENST00000521550 TRIM26Q12899 539 aaPredicted RBP22.26■■□□□ 1.15
SPIDR-214ENST00000521550 SYNJ1O43426 1573 aa22.24■■□□□ 1.15
SPIDR-214ENST00000521550 CHMP7Q8WUX9 453 aaPredicted RBP22.24■■□□□ 1.15
SPIDR-214ENST00000521550 ABCA5Q8WWZ7 1642 aa22.23■■□□□ 1.15
SPIDR-214ENST00000521550 SYNJ2O15056 1496 aa22.2■■□□□ 1.14
SPIDR-214ENST00000521550 HRCP23327 699 aa22.18■■□□□ 1.14
SPIDR-214ENST00000521550 CLASP1Q7Z460 1538 aa22.12■■□□□ 1.13
SPIDR-214ENST00000521550 EHMT2Q96KQ7 1210 aa22.12■■□□□ 1.13
SPIDR-214ENST00000521550 CYB5RLQ6IPT4 315 aa22.09■■□□□ 1.13
SPIDR-214ENST00000521550 CSRNP3Q8WYN3 585 aa22.07■■□□□ 1.12
SPIDR-214ENST00000521550 ARAP1Q96P48 1450 aa22.04■■□□□ 1.12
SPIDR-214ENST00000521550 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
SPIDR-214ENST00000521550 ERICH3Q5RHP9 1530 aa22.02■■□□□ 1.12
SPIDR-214ENST00000521550 GRIN2AQ12879 1464 aa22.02■■□□□ 1.12
SPIDR-214ENST00000521550 FHAD1B1AJZ9 1412 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms