RNA–Protein interactions for RNA: ENST00000521049.5

TRAM1-204, Transcript of translocation associated membrane protein 1, humanhuman

TSL 5

Gene TRAM1, Length 872 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1-204ENST00000521049 NISCHQ9Y2I1 1504 aa41.49■■■■■ 4.23
TRAM1-204ENST00000521049 ABCC9O60706 1549 aa37.63■■■■□ 3.61
TRAM1-204ENST00000521049 CCDC180Q9P1Z9 1646 aa37.24■■■■□ 3.55
TRAM1-204ENST00000521049 DNAJC5BQ9UF47 199 aa35.7■■■■□ 3.31
TRAM1-204ENST00000521049 RB1CC1Q8TDY2 1594 aa35.68■■■■□ 3.3
TRAM1-204ENST00000521049 NACADO15069 1562 aa35.39■■■■□ 3.26
TRAM1-204ENST00000521049 DCAF8L2P0C7V8 631 aa35.25■■■■□ 3.23
TRAM1-204ENST00000521049 PABPN1Q86U42 306 aaKnown RBP eCLIP35.08■■■■□ 3.21
TRAM1-204ENST00000521049 MYO15BQ96JP2 1530 aa34.86■■■■□ 3.17
TRAM1-204ENST00000521049 UNC13AQ9UPW8 1703 aa34.68■■■■□ 3.14
TRAM1-204ENST00000521049 BICRAQ9NZM4 1560 aa34.63■■■■□ 3.13
TRAM1-204ENST00000521049 ZCCHC6Q5VYS8 1495 aaKnown RBP34.28■■■■□ 3.08
TRAM1-204ENST00000521049 DCAF1Q9Y4B6 1507 aa34.27■■■■□ 3.08
TRAM1-204ENST00000521049 SHROOM4Q9ULL8 1493 aa34.2■■■■□ 3.07
TRAM1-204ENST00000521049 CECR2Q9BXF3 1484 aa33.97■■■■□ 3.03
TRAM1-204ENST00000521049 CC2D2AQ9P2K1 1620 aa33.94■■■■□ 3.02
TRAM1-204ENST00000521049 SCRIBQ14160 1630 aa33.9■■■■□ 3.02
TRAM1-204ENST00000521049 EIF4G1Q04637 1599 aaKnown RBP33.81■■■■□ 3
TRAM1-204ENST00000521049 DNAJC5Q9H3Z4 198 aa33.06■■■□□ 2.88
TRAM1-204ENST00000521049 NCAPD3P42695 1498 aa32.75■■■□□ 2.83
TRAM1-204ENST00000521049 CUX2O14529 1486 aa32.61■■■□□ 2.81
TRAM1-204ENST00000521049 ATAD2BQ9ULI0 1458 aa32.56■■■□□ 2.8
TRAM1-204ENST00000521049 ERCC6Q03468 1493 aa32.53■■■□□ 2.8
TRAM1-204ENST00000521049 SMARCA2P51531 1590 aa32.41■■■□□ 2.78
TRAM1-204ENST00000521049 HMGXB3Q12766 1538 aa32.37■■■□□ 2.77
TRAM1-204ENST00000521049 SMARCA4P51532 1647 aa32.35■■■□□ 2.77
TRAM1-204ENST00000521049 NESP48681 1621 aa32.23■■■□□ 2.75
TRAM1-204ENST00000521049 BAZ1AQ9NRL2 1556 aaPredicted RBP32.2■■■□□ 2.75
TRAM1-204ENST00000521049 BAZ1BQ9UIG0 1483 aaKnown RBP32.19■■■□□ 2.74
TRAM1-204ENST00000521049 PEG3Q9GZU2 1588 aa32.09■■■□□ 2.73
TRAM1-204ENST00000521049 LAMC3Q9Y6N6 1575 aa31.96■■■□□ 2.71
TRAM1-204ENST00000521049 MROH2BQ7Z745 1585 aa31.94■■■□□ 2.7
TRAM1-204ENST00000521049 THOC2Q8NI27 1593 aaKnown RBP31.9■■■□□ 2.7
TRAM1-204ENST00000521049 PDS5BQ9NTI5 1447 aa31.89■■■□□ 2.7
TRAM1-204ENST00000521049 CADPSQ9ULU8 1353 aa31.75■■■□□ 2.67
TRAM1-204ENST00000521049 KIF21AQ7Z4S6 1674 aa31.67■■■□□ 2.66
TRAM1-204ENST00000521049 MRC2Q9UBG0 1479 aa31.56■■■□□ 2.64
TRAM1-204ENST00000521049 WIZO95785 1651 aa31.47■■■□□ 2.63
TRAM1-204ENST00000521049 WDR62O43379 1518 aa31.46■■■□□ 2.63
TRAM1-204ENST00000521049 TRIM41Q8WV44 630 aa31.39■■■□□ 2.62
TRAM1-204ENST00000521049 CEP164Q9UPV0 1460 aa31.35■■■□□ 2.61
TRAM1-204ENST00000521049 FANCD2Q9BXW9 1451 aa31.32■■■□□ 2.6
TRAM1-204ENST00000521049 CFTRP13569 1480 aa31.29■■■□□ 2.6
TRAM1-204ENST00000521049 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
TRAM1-204ENST00000521049 OSCARQ8IYS5 282 aa31.19■■■□□ 2.58
TRAM1-204ENST00000521049 TOP2AP11388 1531 aaKnown RBP31.09■■■□□ 2.57
TRAM1-204ENST00000521049 URB2Q14146 1524 aaKnown RBP31.05■■■□□ 2.56
TRAM1-204ENST00000521049 CCDC88BA6NC98 1476 aa30.82■■■□□ 2.52
TRAM1-204ENST00000521049 IFT140Q96RY7 1462 aa30.79■■■□□ 2.52
TRAM1-204ENST00000521049 ZNF608Q9ULD9 1512 aaPredicted RBP30.73■■■□□ 2.51
TRAM1-204ENST00000521049 PRDM2Q13029 1718 aa30.69■■■□□ 2.5
TRAM1-204ENST00000521049 TOPBP1Q92547 1522 aa30.68■■■□□ 2.5
TRAM1-204ENST00000521049 ABCC8Q09428 1581 aa30.66■■■□□ 2.5
TRAM1-204ENST00000521049 RIMBP3CA6NJZ7 1639 aa30.59■■■□□ 2.49
TRAM1-204ENST00000521049 RIMBP3BA6NNM3 1639 aa30.59■■■□□ 2.49
TRAM1-204ENST00000521049 RIMBP3Q9UFD9 1639 aa30.59■■■□□ 2.49
TRAM1-204ENST00000521049 ARHGEF11O15085 1522 aa30.52■■■□□ 2.48
TRAM1-204ENST00000521049 DNMBPQ6XZF7 1577 aa30.49■■■□□ 2.47
TRAM1-204ENST00000521049 AQRO60306 1485 aaKnown RBP eCLIP30.45■■■□□ 2.475e-8■■■■■ 33.4
TRAM1-204ENST00000521049 EIF4G3O43432 1585 aaKnown RBP30.45■■■□□ 2.46
TRAM1-204ENST00000521049 CYB5RLQ6IPT4 315 aa30.44■■■□□ 2.46
TRAM1-204ENST00000521049 TARBP1Q13395 1621 aaKnown RBP30.37■■■□□ 2.45
TRAM1-204ENST00000521049 FBLN2P98095 1184 aa30.36■■■□□ 2.45
TRAM1-204ENST00000521049 POLA1P09884 1462 aaPredicted RBP30.34■■■□□ 2.45
TRAM1-204ENST00000521049 SOGA1O94964 1423 aa30.27■■■□□ 2.44
TRAM1-204ENST00000521049 TDRD9Q8NDG6 1382 aaKnown RBP30.25■■■□□ 2.43
TRAM1-204ENST00000521049 RAD54L2Q9Y4B4 1467 aa30.25■■■□□ 2.43
TRAM1-204ENST00000521049 CHD1O14646 1710 aa30.22■■■□□ 2.43
TRAM1-204ENST00000521049 ARAP1Q96P48 1450 aa30.2■■■□□ 2.43
TRAM1-204ENST00000521049 TRHP20396 242 aaPredicted RBP30.19■■■□□ 2.42
TRAM1-204ENST00000521049 CHMP7Q8WUX9 453 aaPredicted RBP30.12■■■□□ 2.41
TRAM1-204ENST00000521049 FGD5Q6ZNL6 1462 aa30.1■■■□□ 2.41
TRAM1-204ENST00000521049 SNAPC4Q5SXM2 1469 aa30.08■■■□□ 2.41
TRAM1-204ENST00000521049 WDR97A6NE52 1622 aa30.07■■■□□ 2.4
TRAM1-204ENST00000521049 MAGI1Q96QZ7 1491 aaPredicted RBP30.02■■■□□ 2.4
TRAM1-204ENST00000521049 CUX1P39880 1505 aa30.01■■■□□ 2.39
TRAM1-204ENST00000521049 GRIN2BQ13224 1484 aa30■■■□□ 2.39
TRAM1-204ENST00000521049 CLASP1Q7Z460 1538 aa29.99■■■□□ 2.39
TRAM1-204ENST00000521049 SYNJ1O43426 1573 aa29.94■■■□□ 2.38
TRAM1-204ENST00000521049 SYNJ2O15056 1496 aa29.93■■■□□ 2.38
TRAM1-204ENST00000521049 GAPVD1Q14C86 1478 aa29.86■■■□□ 2.37
TRAM1-204ENST00000521049 ABCA10Q8WWZ4 1543 aa29.77■■■□□ 2.36
TRAM1-204ENST00000521049 PBRM1Q86U86 1689 aa29.67■■■□□ 2.34
TRAM1-204ENST00000521049 ABCA5Q8WWZ7 1642 aa29.66■■■□□ 2.34
TRAM1-204ENST00000521049 SUPT5HO00267 1087 aaKnown RBP29.64■■■□□ 2.34
TRAM1-204ENST00000521049 WRNQ14191 1432 aaPredicted RBP eCLIP29.63■■■□□ 2.33
TRAM1-204ENST00000521049 GRIN2AQ12879 1464 aa29.59■■■□□ 2.33
TRAM1-204ENST00000521049 AEBP2Q6ZN18 517 aaPredicted RBP29.54■■■□□ 2.32
TRAM1-204ENST00000521049 NUP160Q12769 1436 aa29.54■■■□□ 2.32
TRAM1-204ENST00000521049 FHAD1B1AJZ9 1412 aa29.49■■■□□ 2.31
TRAM1-204ENST00000521049 ERCC6L2Q5T890 1561 aa29.47■■■□□ 2.31
TRAM1-204ENST00000521049 ADAMTS12P58397 1594 aa29.45■■■□□ 2.31
TRAM1-204ENST00000521049 CEP170Q5SW79 1584 aa29.44■■■□□ 2.3
TRAM1-204ENST00000521049 TOP2BQ02880 1626 aa29.43■■■□□ 2.3
TRAM1-204ENST00000521049 BIVM-ERCC5R4GMW8 1640 aa29.38■■■□□ 2.29
TRAM1-204ENST00000521049 ERICH3Q5RHP9 1530 aa29.38■■■□□ 2.29
TRAM1-204ENST00000521049 SHROOM2Q13796 1616 aa29.34■■■□□ 2.29
TRAM1-204ENST00000521049 JPH4Q96JJ6 628 aa29.33■■■□□ 2.29
TRAM1-204ENST00000521049 PRG4Q92954 1404 aaPredicted RBP29.29■■■□□ 2.28
TRAM1-204ENST00000521049 NPM1P06748 294 aaKnown RBP eCLIP29.15■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms