RNA–Protein interactions for RNA: ENST00000520475.5

PTK2-222, Transcript of protein tyrosine kinase 2, human

TSL 5

Gene PTK2, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTK2-222	ENST00000520475	AEBP2	Q6ZN18	517 aa	Predicted RBP	20.02	■□□□□ 0.8
PTK2-222	ENST00000520475	CHIC1	Q5VXU3	224 aa		19.05	■□□□□ 0.64
PTK2-222	ENST00000520475	NISCH	Q9Y2I1	1504 aa		17.64	■□□□□ 0.41
PTK2-222	ENST00000520475	SENP3	Q9H4L4	574 aa	Predicted RBP	17.08	■□□□□ 0.32
PTK2-222	ENST00000520475	PHF23	Q9BUL5	403 aa	Predicted RBP	16.87	■□□□□ 0.29
PTK2-222	ENST00000520475	ABCC9	O60706	1549 aa		15.92	■□□□□ 0.14
PTK2-222	ENST00000520475	FOXD1	Q16676	465 aa		15.91	■□□□□ 0.14
PTK2-222	ENST00000520475	CCDC180	Q9P1Z9	1646 aa		15.57	■□□□□ 0.08
PTK2-222	ENST00000520475	DNAJC5B	Q9UF47	199 aa		15.31	■□□□□ 0.04
PTK2-222	ENST00000520475	PLPPR3	Q6T4P5	718 aa		15.25	■□□□□ 0.03
PTK2-222	ENST00000520475	RB1CC1	Q8TDY2	1594 aa		15.03	■□□□□ -0
PTK2-222	ENST00000520475	PPP6R1	Q9UPN7	881 aa		14.91	□□□□□ -0.02
PTK2-222	ENST00000520475	MSH5	O43196	834 aa		14.89	□□□□□ -0.03
PTK2-222	ENST00000520475	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.89	□□□□□ -0.03
PTK2-222	ENST00000520475	ADRA2B	P18089	450 aa		14.87	□□□□□ -0.03
PTK2-222	ENST00000520475	NACAD	O15069	1562 aa		14.81	□□□□□ -0.04
PTK2-222	ENST00000520475	DCAF8L2	P0C7V8	631 aa		14.79	□□□□□ -0.04
PTK2-222	ENST00000520475	UNC13A	Q9UPW8	1703 aa		14.75	□□□□□ -0.05
PTK2-222	ENST00000520475	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.73	□□□□□ -0.05
PTK2-222	ENST00000520475	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.69	□□□□□ -0.06
PTK2-222	ENST00000520475	MYO15B	Q96JP2	1530 aa		14.63	□□□□□ -0.07
PTK2-222	ENST00000520475	DCAF1	Q9Y4B6	1507 aa		14.61	□□□□□ -0.07
PTK2-222	ENST00000520475	BICRA	Q9NZM4	1560 aa		14.56	□□□□□ -0.08
PTK2-222	ENST00000520475	DNAJC5	Q9H3Z4	198 aa		14.48	□□□□□ -0.09
PTK2-222	ENST00000520475	POTED	Q86YR6	584 aa		14.46	□□□□□ -0.09
PTK2-222	ENST00000520475	CECR2	Q9BXF3	1484 aa		14.41	□□□□□ -0.1
PTK2-222	ENST00000520475	CC2D2A	Q9P2K1	1620 aa		14.41	□□□□□ -0.1
PTK2-222	ENST00000520475	SHROOM4	Q9ULL8	1493 aa		14.37	□□□□□ -0.11
PTK2-222	ENST00000520475	EIF4G1	Q04637	1599 aa	Known RBP	14.25	□□□□□ -0.13
PTK2-222	ENST00000520475	SCRIB	Q14160	1630 aa		14.16	□□□□□ -0.14
PTK2-222	ENST00000520475	CUX2	O14529	1486 aa		13.98	□□□□□ -0.17
PTK2-222	ENST00000520475	ERCC6	Q03468	1493 aa		13.82	□□□□□ -0.2
PTK2-222	ENST00000520475	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.65	□□□□□ -0.22
PTK2-222	ENST00000520475	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.64	□□□□□ -0.23
PTK2-222	ENST00000520475	NCAPD3	P42695	1498 aa		13.64	□□□□□ -0.23
PTK2-222	ENST00000520475	SCAF1	Q9H7N4	1312 aa	Known RBP	13.63	□□□□□ -0.23
PTK2-222	ENST00000520475	TRIM41	Q8WV44	630 aa		13.62	□□□□□ -0.23
PTK2-222	ENST00000520475	SMARCA4	P51532	1647 aa		13.59	□□□□□ -0.23
PTK2-222	ENST00000520475	MROH2B	Q7Z745	1585 aa		13.58	□□□□□ -0.24
PTK2-222	ENST00000520475	ATAD2B	Q9ULI0	1458 aa		13.55	□□□□□ -0.24
PTK2-222	ENST00000520475	DMRT2	Q9Y5R5	561 aa		13.55	□□□□□ -0.24
PTK2-222	ENST00000520475	RSF1	Q96T23	1441 aa	Predicted RBP	13.54	□□□□□ -0.24
PTK2-222	ENST00000520475	THOC2	Q8NI27	1593 aa	Known RBP	13.54	□□□□□ -0.24
PTK2-222	ENST00000520475	NES	P48681	1621 aa		13.53	□□□□□ -0.24
PTK2-222	ENST00000520475	SMARCA2	P51531	1590 aa		13.52	□□□□□ -0.25
PTK2-222	ENST00000520475	HMGXB3	Q12766	1538 aa		13.51	□□□□□ -0.25
PTK2-222	ENST00000520475	PEG3	Q9GZU2	1588 aa		13.49	□□□□□ -0.25
PTK2-222	ENST00000520475	LAMC3	Q9Y6N6	1575 aa		13.45	□□□□□ -0.26
PTK2-222	ENST00000520475	KIF21A	Q7Z4S6	1674 aa		13.44	□□□□□ -0.26
PTK2-222	ENST00000520475	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.42	□□□□□ -0.26
PTK2-222	ENST00000520475	WIZ	O95785	1651 aa		13.4	□□□□□ -0.26
PTK2-222	ENST00000520475	SUPT5H	O00267	1087 aa	Known RBP	13.37	□□□□□ -0.27
PTK2-222	ENST00000520475	PPP4R3CP	Q6ZMV5	832 aa		13.37	□□□□□ -0.27
PTK2-222	ENST00000520475	PDS5B	Q9NTI5	1447 aa		13.37	□□□□□ -0.27
PTK2-222	ENST00000520475	TOP2A	P11388	1531 aa	Known RBP	13.28	□□□□□ -0.28
PTK2-222	ENST00000520475	OSCAR	Q8IYS5	282 aa		13.26	□□□□□ -0.29
PTK2-222	ENST00000520475	MRC2	Q9UBG0	1479 aa		13.26	□□□□□ -0.29
PTK2-222	ENST00000520475	WDR62	O43379	1518 aa		13.23	□□□□□ -0.29
PTK2-222	ENST00000520475	CCDC88B	A6NC98	1476 aa		13.2	□□□□□ -0.3
PTK2-222	ENST00000520475	CADPS	Q9ULU8	1353 aa		13.19	□□□□□ -0.3
PTK2-222	ENST00000520475	RIMBP3C	A6NJZ7	1639 aa		13.13	□□□□□ -0.31
PTK2-222	ENST00000520475	RIMBP3B	A6NNM3	1639 aa		13.13	□□□□□ -0.31
PTK2-222	ENST00000520475	RIMBP3	Q9UFD9	1639 aa		13.13	□□□□□ -0.31
PTK2-222	ENST00000520475	CEP164	Q9UPV0	1460 aa		13.12	□□□□□ -0.31
PTK2-222	ENST00000520475	CNKSR2	Q8WXI2	1034 aa		13.11	□□□□□ -0.31
PTK2-222	ENST00000520475	CFTR	P13569	1480 aa		13.1	□□□□□ -0.31
PTK2-222	ENST00000520475	HOXD11	P31277	338 aa	Predicted RBP	13.06	□□□□□ -0.32
PTK2-222	ENST00000520475	FANCD2	Q9BXW9	1451 aa		13.04	□□□□□ -0.32
PTK2-222	ENST00000520475	DCAF8L1	A6NGE4	600 aa		13.02	□□□□□ -0.33
PTK2-222	ENST00000520475	ARHGEF11	O15085	1522 aa		13.02	□□□□□ -0.33
PTK2-222	ENST00000520475	TRH	P20396	242 aa	Predicted RBP	12.98	□□□□□ -0.33
PTK2-222	ENST00000520475	RNF216	Q9NWF9	866 aa	Predicted RBP	12.98	□□□□□ -0.33
PTK2-222	ENST00000520475	URB2	Q14146	1524 aa	Known RBP	12.95	□□□□□ -0.34
PTK2-222	ENST00000520475	CYB5RL	Q6IPT4	315 aa		12.95	□□□□□ -0.34
PTK2-222	ENST00000520475	PRDM2	Q13029	1718 aa		12.92	□□□□□ -0.34
PTK2-222	ENST00000520475	NCBP3	Q53F19	620 aa	Known RBP	12.88	□□□□□ -0.35
PTK2-222	ENST00000520475	IFT140	Q96RY7	1462 aa		12.87	□□□□□ -0.35
PTK2-222	ENST00000520475	CHD1	O14646	1710 aa		12.85	□□□□□ -0.35
PTK2-222	ENST00000520475	ABCC8	Q09428	1581 aa		12.85	□□□□□ -0.35
PTK2-222	ENST00000520475	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.84	□□□□□ -0.35
PTK2-222	ENST00000520475	ARAP1	Q96P48	1450 aa		12.83	□□□□□ -0.36
PTK2-222	ENST00000520475	EIF4G3	O43432	1585 aa	Known RBP	12.81	□□□□□ -0.36
PTK2-222	ENST00000520475	CACNB1	Q02641	598 aa	Predicted RBP	12.77	□□□□□ -0.37
PTK2-222	ENST00000520475	TOPBP1	Q92547	1522 aa		12.77	□□□□□ -0.37
PTK2-222	ENST00000520475	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.74	□□□□□ -0.37
PTK2-222	ENST00000520475	DNMBP	Q6XZF7	1577 aa		12.73	□□□□□ -0.37
PTK2-222	ENST00000520475	FBLN2	P98095	1184 aa		12.73	□□□□□ -0.37
PTK2-222	ENST00000520475	CUX1	P39880	1505 aa		12.72	□□□□□ -0.37
PTK2-222	ENST00000520475	RNF39	Q9H2S5	420 aa		12.7	□□□□□ -0.38
PTK2-222	ENST00000520475	SOGA1	O94964	1423 aa		12.7	□□□□□ -0.38
PTK2-222	ENST00000520475	TARBP1	Q13395	1621 aa	Known RBP	12.7	□□□□□ -0.38
PTK2-222	ENST00000520475	AQR	O60306	1485 aa	Known RBP eCLIP	12.69	□□□□□ -0.38	3e-6	■■■■□ 24.7
PTK2-222	ENST00000520475	NPM3	O75607	178 aa	Known RBP	12.68	□□□□□ -0.38
PTK2-222	ENST00000520475	POLA1	P09884	1462 aa	Predicted RBP	12.66	□□□□□ -0.38
PTK2-222	ENST00000520475	FGD5	Q6ZNL6	1462 aa		12.65	□□□□□ -0.38
PTK2-222	ENST00000520475	TOP2B	Q02880	1626 aa		12.64	□□□□□ -0.39
PTK2-222	ENST00000520475	RAD54L2	Q9Y4B4	1467 aa		12.63	□□□□□ -0.39
PTK2-222	ENST00000520475	CLASP1	Q7Z460	1538 aa		12.62	□□□□□ -0.39
PTK2-222	ENST00000520475	SYNJ1	O43426	1573 aa		12.62	□□□□□ -0.39
PTK2-222	ENST00000520475	BIVM-ERCC5	R4GMW8	1640 aa		12.61	□□□□□ -0.39

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