RNA–Protein interactions for RNA: ENST00000518528.1

PVT1-207, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 624 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-207ENST00000518528 NISCHQ9Y2I1 1504 aa22.57■■□□□ 1.2
PVT1-207ENST00000518528 ABCC9O60706 1549 aa20.84■□□□□ 0.93
PVT1-207ENST00000518528 CCDC180Q9P1Z9 1646 aa20.35■□□□□ 0.85
PVT1-207ENST00000518528 DNAJC5BQ9UF47 199 aa19.9■□□□□ 0.78
PVT1-207ENST00000518528 RB1CC1Q8TDY2 1594 aa19.66■□□□□ 0.74
PVT1-207ENST00000518528 NACADO15069 1562 aa19.44■□□□□ 0.7
PVT1-207ENST00000518528 PABPN1Q86U42 306 aaKnown RBP eCLIP19.41■□□□□ 0.7
PVT1-207ENST00000518528 DCAF8L2P0C7V8 631 aa19.4■□□□□ 0.7
PVT1-207ENST00000518528 MYO15BQ96JP2 1530 aa19.05■□□□□ 0.64
PVT1-207ENST00000518528 BICRAQ9NZM4 1560 aa18.99■□□□□ 0.63
PVT1-207ENST00000518528 UNC13AQ9UPW8 1703 aa18.94■□□□□ 0.62
PVT1-207ENST00000518528 CECR2Q9BXF3 1484 aa18.85■□□□□ 0.61
PVT1-207ENST00000518528 SHROOM4Q9ULL8 1493 aa18.85■□□□□ 0.61
PVT1-207ENST00000518528 CC2D2AQ9P2K1 1620 aa18.74■□□□□ 0.59
PVT1-207ENST00000518528 DNAJC5Q9H3Z4 198 aa18.67■□□□□ 0.58
PVT1-207ENST00000518528 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.57
PVT1-207ENST00000518528 EIF4G1Q04637 1599 aaKnown RBP18.62■□□□□ 0.57
PVT1-207ENST00000518528 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
PVT1-207ENST00000518528 SCRIBQ14160 1630 aa18.54■□□□□ 0.56
PVT1-207ENST00000518528 CUX2O14529 1486 aa18.18■□□□□ 0.5
PVT1-207ENST00000518528 ERCC6Q03468 1493 aa18.11■□□□□ 0.49
PVT1-207ENST00000518528 NCAPD3P42695 1498 aa17.98■□□□□ 0.47
PVT1-207ENST00000518528 ATAD2BQ9ULI0 1458 aa17.84■□□□□ 0.45
PVT1-207ENST00000518528 SMARCA2P51531 1590 aa17.79■□□□□ 0.44
PVT1-207ENST00000518528 HMGXB3Q12766 1538 aa17.75■□□□□ 0.43
PVT1-207ENST00000518528 NESP48681 1621 aa17.74■□□□□ 0.43
PVT1-207ENST00000518528 TRIM41Q8WV44 630 aa17.7■□□□□ 0.42
PVT1-207ENST00000518528 BAZ1BQ9UIG0 1483 aaKnown RBP17.67■□□□□ 0.42
PVT1-207ENST00000518528 SMARCA4P51532 1647 aa17.64■□□□□ 0.41
PVT1-207ENST00000518528 PDS5BQ9NTI5 1447 aa17.62■□□□□ 0.41
PVT1-207ENST00000518528 THOC2Q8NI27 1593 aaKnown RBP17.58■□□□□ 0.41
PVT1-207ENST00000518528 LAMC3Q9Y6N6 1575 aa17.58■□□□□ 0.41
PVT1-207ENST00000518528 BAZ1AQ9NRL2 1556 aaPredicted RBP17.57■□□□□ 0.4
PVT1-207ENST00000518528 PEG3Q9GZU2 1588 aa17.49■□□□□ 0.39
PVT1-207ENST00000518528 CADPSQ9ULU8 1353 aa17.45■□□□□ 0.38
PVT1-207ENST00000518528 MRC2Q9UBG0 1479 aa17.42■□□□□ 0.38
PVT1-207ENST00000518528 KIF21AQ7Z4S6 1674 aa17.39■□□□□ 0.37
PVT1-207ENST00000518528 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
PVT1-207ENST00000518528 MROH2BQ7Z745 1585 aa17.36■□□□□ 0.37
PVT1-207ENST00000518528 WDR62O43379 1518 aa17.32■□□□□ 0.36
PVT1-207ENST00000518528 CEP164Q9UPV0 1460 aa17.27■□□□□ 0.36
PVT1-207ENST00000518528 FANCD2Q9BXW9 1451 aa17.21■□□□□ 0.35
PVT1-207ENST00000518528 CFTRP13569 1480 aa17.12■□□□□ 0.33
PVT1-207ENST00000518528 WIZO95785 1651 aa17.06■□□□□ 0.32
PVT1-207ENST00000518528 URB2Q14146 1524 aaKnown RBP17.04■□□□□ 0.32
PVT1-207ENST00000518528 RIMBP3CA6NJZ7 1639 aa16.98■□□□□ 0.31
PVT1-207ENST00000518528 RIMBP3BA6NNM3 1639 aa16.98■□□□□ 0.31
PVT1-207ENST00000518528 RIMBP3Q9UFD9 1639 aa16.98■□□□□ 0.31
PVT1-207ENST00000518528 CYB5RLQ6IPT4 315 aa16.97■□□□□ 0.31
PVT1-207ENST00000518528 IFT140Q96RY7 1462 aa16.96■□□□□ 0.31
PVT1-207ENST00000518528 TRHP20396 242 aaPredicted RBP16.95■□□□□ 0.3
PVT1-207ENST00000518528 ARHGEF11O15085 1522 aa16.95■□□□□ 0.3
PVT1-207ENST00000518528 RSF1Q96T23 1441 aaPredicted RBP16.91■□□□□ 0.3
PVT1-207ENST00000518528 TOP2AP11388 1531 aaKnown RBP16.91■□□□□ 0.3
PVT1-207ENST00000518528 ZNF608Q9ULD9 1512 aaPredicted RBP16.9■□□□□ 0.3
PVT1-207ENST00000518528 FBLN2P98095 1184 aa16.83■□□□□ 0.28
PVT1-207ENST00000518528 ABCC8Q09428 1581 aa16.82■□□□□ 0.28
PVT1-207ENST00000518528 AEBP2Q6ZN18 517 aaPredicted RBP16.81■□□□□ 0.28
PVT1-207ENST00000518528 TOPBP1Q92547 1522 aa16.8■□□□□ 0.28
PVT1-207ENST00000518528 ARAP1Q96P48 1450 aa16.75■□□□□ 0.27
PVT1-207ENST00000518528 CCDC88BA6NC98 1476 aa16.74■□□□□ 0.27
PVT1-207ENST00000518528 AQRO60306 1485 aaKnown RBP eCLIP16.74■□□□□ 0.27
PVT1-207ENST00000518528 EIF4G3O43432 1585 aaKnown RBP16.72■□□□□ 0.27
PVT1-207ENST00000518528 DNMBPQ6XZF7 1577 aa16.69■□□□□ 0.26
PVT1-207ENST00000518528 PRDM2Q13029 1718 aa16.69■□□□□ 0.26
PVT1-207ENST00000518528 CHMP7Q8WUX9 453 aaPredicted RBP16.65■□□□□ 0.26
PVT1-207ENST00000518528 POLA1P09884 1462 aaPredicted RBP16.61■□□□□ 0.25
PVT1-207ENST00000518528 CHD1O14646 1710 aa16.61■□□□□ 0.25
PVT1-207ENST00000518528 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
PVT1-207ENST00000518528 SOGA1O94964 1423 aa16.61■□□□□ 0.25
PVT1-207ENST00000518528 TARBP1Q13395 1621 aaKnown RBP16.6■□□□□ 0.25
PVT1-207ENST00000518528 RAD54L2Q9Y4B4 1467 aa16.55■□□□□ 0.24
PVT1-207ENST00000518528 SNAPC4Q5SXM2 1469 aa16.54■□□□□ 0.24
PVT1-207ENST00000518528 SYNJ1O43426 1573 aa16.53■□□□□ 0.24
PVT1-207ENST00000518528 MAGI1Q96QZ7 1491 aaPredicted RBP16.52■□□□□ 0.23
PVT1-207ENST00000518528 CLASP1Q7Z460 1538 aa16.5■□□□□ 0.23
PVT1-207ENST00000518528 GRIN2BQ13224 1484 aa16.49■□□□□ 0.23
PVT1-207ENST00000518528 WDR97A6NE52 1622 aa16.48■□□□□ 0.23
PVT1-207ENST00000518528 SYNJ2O15056 1496 aa16.47■□□□□ 0.23
PVT1-207ENST00000518528 GAPVD1Q14C86 1478 aa16.45■□□□□ 0.22
PVT1-207ENST00000518528 FGD5Q6ZNL6 1462 aa16.45■□□□□ 0.22
PVT1-207ENST00000518528 CUX1P39880 1505 aa16.34■□□□□ 0.21
PVT1-207ENST00000518528 ABCA10Q8WWZ4 1543 aa16.26■□□□□ 0.19
PVT1-207ENST00000518528 GRIN2AQ12879 1464 aa16.23■□□□□ 0.19
PVT1-207ENST00000518528 NUP160Q12769 1436 aa16.2■□□□□ 0.18
PVT1-207ENST00000518528 PBRM1Q86U86 1689 aa16.2■□□□□ 0.18
PVT1-207ENST00000518528 WRNQ14191 1432 aaPredicted RBP eCLIP16.19■□□□□ 0.18
PVT1-207ENST00000518528 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
PVT1-207ENST00000518528 CEP170Q5SW79 1584 aa16.18■□□□□ 0.18
PVT1-207ENST00000518528 ERCC6L2Q5T890 1561 aa16.18■□□□□ 0.18
PVT1-207ENST00000518528 ABCA5Q8WWZ7 1642 aa16.17■□□□□ 0.18
PVT1-207ENST00000518528 FHAD1B1AJZ9 1412 aa16.17■□□□□ 0.18
PVT1-207ENST00000518528 FAM69CQ0P6D2 419 aa16.16■□□□□ 0.18
PVT1-207ENST00000518528 JPH4Q96JJ6 628 aa16.13■□□□□ 0.17
PVT1-207ENST00000518528 PRG4Q92954 1404 aaPredicted RBP16.12■□□□□ 0.17
PVT1-207ENST00000518528 ADAMTS12P58397 1594 aa16.11■□□□□ 0.17
PVT1-207ENST00000518528 SHROOM2Q13796 1616 aa16.08■□□□□ 0.16
PVT1-207ENST00000518528 ABCC10Q5T3U5 1492 aa16.07■□□□□ 0.16
PVT1-207ENST00000518528 ERICH3Q5RHP9 1530 aa16.04■□□□□ 0.16
PVT1-207ENST00000518528 KDM4FA0A1W2PPD8 638 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms