RNA–Protein interactions for RNA: ENST00000517940.1

AP3B1-203, Transcript of adaptor related protein complex 3 subunit beta 1, humanhuman

TSL 2

Gene AP3B1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1-203ENST00000517940 NISCHQ9Y2I1 1504 aa28.57■■■□□ 2.16
AP3B1-203ENST00000517940 CCDC180Q9P1Z9 1646 aa25.26■■□□□ 1.63
AP3B1-203ENST00000517940 ABCC9O60706 1549 aa24.37■■□□□ 1.49
AP3B1-203ENST00000517940 ZCCHC6Q5VYS8 1495 aaKnown RBP23.9■■□□□ 1.42
AP3B1-203ENST00000517940 DCAF1Q9Y4B6 1507 aa23.64■■□□□ 1.38
AP3B1-203ENST00000517940 NACADO15069 1562 aa23.61■■□□□ 1.37
AP3B1-203ENST00000517940 MYO15BQ96JP2 1530 aa23.61■■□□□ 1.37
AP3B1-203ENST00000517940 RB1CC1Q8TDY2 1594 aa23.55■■□□□ 1.36
AP3B1-203ENST00000517940 DCAF8L2P0C7V8 631 aa23.51■■□□□ 1.35
AP3B1-203ENST00000517940 UNC13AQ9UPW8 1703 aa23.21■■□□□ 1.31
AP3B1-203ENST00000517940 SCRIBQ14160 1630 aa23.09■■□□□ 1.29
AP3B1-203ENST00000517940 BICRAQ9NZM4 1560 aa22.99■■□□□ 1.27
AP3B1-203ENST00000517940 PABPN1Q86U42 306 aaKnown RBP eCLIP22.8■■□□□ 1.24
AP3B1-203ENST00000517940 SHROOM4Q9ULL8 1493 aa22.71■■□□□ 1.23
AP3B1-203ENST00000517940 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
AP3B1-203ENST00000517940 EIF4G1Q04637 1599 aaKnown RBP22.27■■□□□ 1.16
AP3B1-203ENST00000517940 DNAJC5BQ9UF47 199 aa22.17■■□□□ 1.14
AP3B1-203ENST00000517940 SMARCA4P51532 1647 aa22.12■■□□□ 1.13
AP3B1-203ENST00000517940 CC2D2AQ9P2K1 1620 aa22.1■■□□□ 1.13
AP3B1-203ENST00000517940 MROH2BQ7Z745 1585 aa22.07■■□□□ 1.12
AP3B1-203ENST00000517940 BAZ1AQ9NRL2 1556 aaPredicted RBP22.07■■□□□ 1.12
AP3B1-203ENST00000517940 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
AP3B1-203ENST00000517940 ATAD2BQ9ULI0 1458 aa21.9■■□□□ 1.1
AP3B1-203ENST00000517940 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.1
AP3B1-203ENST00000517940 WIZO95785 1651 aa21.85■■□□□ 1.09
AP3B1-203ENST00000517940 SMARCA2P51531 1590 aa21.82■■□□□ 1.08
AP3B1-203ENST00000517940 NCAPD3P42695 1498 aa21.8■■□□□ 1.08
AP3B1-203ENST00000517940 HMGXB3Q12766 1538 aa21.75■■□□□ 1.07
AP3B1-203ENST00000517940 BAZ1BQ9UIG0 1483 aaKnown RBP21.67■■□□□ 1.06
AP3B1-203ENST00000517940 TOP2AP11388 1531 aaKnown RBP21.59■■□□□ 1.05
AP3B1-203ENST00000517940 SUPT5HO00267 1087 aaKnown RBP21.43■■□□□ 1.02
AP3B1-203ENST00000517940 CCDC88BA6NC98 1476 aa21.33■■□□□ 1.01
AP3B1-203ENST00000517940 NESP48681 1621 aa21.26■□□□□ 0.99
AP3B1-203ENST00000517940 LAMC3Q9Y6N6 1575 aa21.17■□□□□ 0.98
AP3B1-203ENST00000517940 CADPSQ9ULU8 1353 aa21.15■□□□□ 0.98
AP3B1-203ENST00000517940 CFTRP13569 1480 aa21.14■□□□□ 0.98
AP3B1-203ENST00000517940 PRDM2Q13029 1718 aa21.06■□□□□ 0.96
AP3B1-203ENST00000517940 KIF21AQ7Z4S6 1674 aa21.02■□□□□ 0.96
AP3B1-203ENST00000517940 FANCD2Q9BXW9 1451 aa20.94■□□□□ 0.94
AP3B1-203ENST00000517940 PDS5BQ9NTI5 1447 aa20.93■□□□□ 0.94
AP3B1-203ENST00000517940 THOC2Q8NI27 1593 aaKnown RBP20.89■□□□□ 0.94
AP3B1-203ENST00000517940 ERCC6Q03468 1493 aa20.88■□□□□ 0.93
AP3B1-203ENST00000517940 CEP164Q9UPV0 1460 aa20.85■□□□□ 0.93
AP3B1-203ENST00000517940 URB2Q14146 1524 aaKnown RBP20.78■□□□□ 0.92
AP3B1-203ENST00000517940 MRC2Q9UBG0 1479 aa20.77■□□□□ 0.92
AP3B1-203ENST00000517940 WDR62O43379 1518 aa20.76■□□□□ 0.91
AP3B1-203ENST00000517940 ABCC8Q09428 1581 aa20.69■□□□□ 0.9
AP3B1-203ENST00000517940 CUX1P39880 1505 aa20.68■□□□□ 0.9
AP3B1-203ENST00000517940 TOPBP1Q92547 1522 aa20.67■□□□□ 0.9
AP3B1-203ENST00000517940 DNMBPQ6XZF7 1577 aa20.66■□□□□ 0.9
AP3B1-203ENST00000517940 SYNJ1O43426 1573 aa20.62■□□□□ 0.89
AP3B1-203ENST00000517940 CUX2O14529 1486 aa20.6■□□□□ 0.89
AP3B1-203ENST00000517940 BIVM-ERCC5R4GMW8 1640 aa20.57■□□□□ 0.88
AP3B1-203ENST00000517940 WRNQ14191 1432 aaPredicted RBP eCLIP20.56■□□□□ 0.88
AP3B1-203ENST00000517940 TOP2BQ02880 1626 aa20.55■□□□□ 0.88
AP3B1-203ENST00000517940 POLA1P09884 1462 aaPredicted RBP20.53■□□□□ 0.88
AP3B1-203ENST00000517940 FGD5Q6ZNL6 1462 aa20.5■□□□□ 0.87
AP3B1-203ENST00000517940 TARBP1Q13395 1621 aaKnown RBP20.48■□□□□ 0.87
AP3B1-203ENST00000517940 RAD54L2Q9Y4B4 1467 aa20.43■□□□□ 0.86
AP3B1-203ENST00000517940 WDR97A6NE52 1622 aa20.42■□□□□ 0.86
AP3B1-203ENST00000517940 IFT140Q96RY7 1462 aa20.4■□□□□ 0.86
AP3B1-203ENST00000517940 ZNF608Q9ULD9 1512 aaPredicted RBP20.38■□□□□ 0.85
AP3B1-203ENST00000517940 SOGA1O94964 1423 aa20.36■□□□□ 0.85
AP3B1-203ENST00000517940 ABCA10Q8WWZ4 1543 aa20.32■□□□□ 0.84
AP3B1-203ENST00000517940 EIF4G3O43432 1585 aaKnown RBP20.31■□□□□ 0.84
AP3B1-203ENST00000517940 ABCA5Q8WWZ7 1642 aa20.27■□□□□ 0.84
AP3B1-203ENST00000517940 CHIC1Q5VXU3 224 aa20.26■□□□□ 0.83
AP3B1-203ENST00000517940 AQRO60306 1485 aaKnown RBP eCLIP20.25■□□□□ 0.83
AP3B1-203ENST00000517940 TDRD9Q8NDG6 1382 aaKnown RBP20.23■□□□□ 0.83
AP3B1-203ENST00000517940 PBRM1Q86U86 1689 aa20.17■□□□□ 0.82
AP3B1-203ENST00000517940 TRIM41Q8WV44 630 aa20.17■□□□□ 0.82
AP3B1-203ENST00000517940 GAPVD1Q14C86 1478 aa20.15■□□□□ 0.82
AP3B1-203ENST00000517940 RUSC2Q8N2Y8 1516 aa20.15■□□□□ 0.82
AP3B1-203ENST00000517940 GRIN2BQ13224 1484 aa20.1■□□□□ 0.81
AP3B1-203ENST00000517940 SNAPC4Q5SXM2 1469 aa20.08■□□□□ 0.81
AP3B1-203ENST00000517940 KIF27Q86VH2 1401 aa20.06■□□□□ 0.8
AP3B1-203ENST00000517940 ERICH3Q5RHP9 1530 aa20.06■□□□□ 0.8
AP3B1-203ENST00000517940 ADAMTS12P58397 1594 aa20.04■□□□□ 0.8
AP3B1-203ENST00000517940 IGF1RP08069 1367 aa20.02■□□□□ 0.8
AP3B1-203ENST00000517940 MAGI1Q96QZ7 1491 aaPredicted RBP20.02■□□□□ 0.8
AP3B1-203ENST00000517940 CHD1O14646 1710 aa20■□□□□ 0.79
AP3B1-203ENST00000517940 CUL7Q14999 1698 aa19.94■□□□□ 0.78
AP3B1-203ENST00000517940 SYNJ2O15056 1496 aa19.94■□□□□ 0.78
AP3B1-203ENST00000517940 FHAD1B1AJZ9 1412 aa19.92■□□□□ 0.78
AP3B1-203ENST00000517940 GRIN2AQ12879 1464 aa19.87■□□□□ 0.77
AP3B1-203ENST00000517940 PRXQ9BXM0 1461 aa19.87■□□□□ 0.77
AP3B1-203ENST00000517940 EEA1Q15075 1411 aa19.87■□□□□ 0.77
AP3B1-203ENST00000517940 CARMIL1Q5VZK9 1371 aa19.85■□□□□ 0.77
AP3B1-203ENST00000517940 CEP170Q5SW79 1584 aa19.84■□□□□ 0.77
AP3B1-203ENST00000517940 NUP160Q12769 1436 aa19.81■□□□□ 0.76
AP3B1-203ENST00000517940 FAM9AQ8IZU1 332 aaPredicted RBP19.8■□□□□ 0.76
AP3B1-203ENST00000517940 CLASP1Q7Z460 1538 aa19.8■□□□□ 0.76
AP3B1-203ENST00000517940 CHMP7Q8WUX9 453 aaPredicted RBP19.79■□□□□ 0.76
AP3B1-203ENST00000517940 CSRNP3Q8WYN3 585 aa19.79■□□□□ 0.76
AP3B1-203ENST00000517940 FBLN2P98095 1184 aa19.78■□□□□ 0.76
AP3B1-203ENST00000517940 RAPGEF2Q9Y4G8 1499 aa19.78■□□□□ 0.76
AP3B1-203ENST00000517940 KIF21BO75037 1637 aa19.76■□□□□ 0.75
AP3B1-203ENST00000517940 OSCARQ8IYS5 282 aa19.71■□□□□ 0.75
AP3B1-203ENST00000517940 SHROOM2Q13796 1616 aa19.66■□□□□ 0.74
AP3B1-203ENST00000517940 CTTNBP2Q8WZ74 1663 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms