RNA–Protein interactions for RNA: ENST00000517525.1

PVT1-204, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 392 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-204ENST00000517525 NISCHQ9Y2I1 1504 aa60.53■■■■■ 7.28
PVT1-204ENST00000517525 CCDC180Q9P1Z9 1646 aa53.93■■■■■ 6.22
PVT1-204ENST00000517525 ABCC9O60706 1549 aa53.01■■■■■ 6.08
PVT1-204ENST00000517525 RB1CC1Q8TDY2 1594 aa50.93■■■■■ 5.74
PVT1-204ENST00000517525 NACADO15069 1562 aa50.85■■■■■ 5.73
PVT1-204ENST00000517525 MYO15BQ96JP2 1530 aa50.56■■■■■ 5.68
PVT1-204ENST00000517525 DCAF8L2P0C7V8 631 aa50.54■■■■■ 5.68
PVT1-204ENST00000517525 ZCCHC6Q5VYS8 1495 aaKnown RBP50.35■■■■■ 5.65
PVT1-204ENST00000517525 DCAF1Q9Y4B6 1507 aa50.17■■■■■ 5.62
PVT1-204ENST00000517525 UNC13AQ9UPW8 1703 aa49.62■■■■■ 5.53
PVT1-204ENST00000517525 PABPN1Q86U42 306 aaKnown RBP eCLIP49.5■■■■■ 5.51
PVT1-204ENST00000517525 BICRAQ9NZM4 1560 aa49.41■■■■■ 5.5
PVT1-204ENST00000517525 DNAJC5BQ9UF47 199 aa49.08■■■■■ 5.45
PVT1-204ENST00000517525 SCRIBQ14160 1630 aa49.04■■■■■ 5.44
PVT1-204ENST00000517525 SHROOM4Q9ULL8 1493 aa49.01■■■■■ 5.44
PVT1-204ENST00000517525 EIF4G1Q04637 1599 aaKnown RBP48.11■■■■■ 5.29
PVT1-204ENST00000517525 CC2D2AQ9P2K1 1620 aa47.96■■■■■ 5.27
PVT1-204ENST00000517525 CECR2Q9BXF3 1484 aa47.75■■■■■ 5.23
PVT1-204ENST00000517525 NCAPD3P42695 1498 aa46.99■■■■■ 5.11
PVT1-204ENST00000517525 SMARCA4P51532 1647 aa46.97■■■■■ 5.11
PVT1-204ENST00000517525 BAZ1AQ9NRL2 1556 aaPredicted RBP46.92■■■■■ 5.1
PVT1-204ENST00000517525 ATAD2BQ9ULI0 1458 aa46.89■■■■■ 5.1
PVT1-204ENST00000517525 SMARCA2P51531 1590 aa46.8■■■■■ 5.08
PVT1-204ENST00000517525 HMGXB3Q12766 1538 aa46.65■■■■■ 5.06
PVT1-204ENST00000517525 PEG3Q9GZU2 1588 aa46.64■■■■■ 5.06
PVT1-204ENST00000517525 MROH2BQ7Z745 1585 aa46.59■■■■■ 5.05
PVT1-204ENST00000517525 BAZ1BQ9UIG0 1483 aaKnown RBP46.42■■■■■ 5.02
PVT1-204ENST00000517525 RSF1Q96T23 1441 aaPredicted RBP46■■■■■ 4.95
PVT1-204ENST00000517525 WIZO95785 1651 aa45.98■■■■■ 4.95
PVT1-204ENST00000517525 NESP48681 1621 aa45.78■■■■■ 4.92
PVT1-204ENST00000517525 ERCC6Q03468 1493 aa45.74■■■■■ 4.91
PVT1-204ENST00000517525 LAMC3Q9Y6N6 1575 aa45.71■■■■■ 4.91
PVT1-204ENST00000517525 TOP2AP11388 1531 aaKnown RBP45.58■■■■■ 4.89
PVT1-204ENST00000517525 CADPSQ9ULU8 1353 aa45.56■■■■■ 4.88
PVT1-204ENST00000517525 CUX2O14529 1486 aa45.5■■■■■ 4.87
PVT1-204ENST00000517525 PDS5BQ9NTI5 1447 aa45.45■■■■■ 4.87
PVT1-204ENST00000517525 CFTRP13569 1480 aa45.22■■■■■ 4.83
PVT1-204ENST00000517525 THOC2Q8NI27 1593 aaKnown RBP45.19■■■■■ 4.82
PVT1-204ENST00000517525 KIF21AQ7Z4S6 1674 aa45.16■■■■■ 4.82
PVT1-204ENST00000517525 CCDC88BA6NC98 1476 aa45.05■■■■■ 4.8
PVT1-204ENST00000517525 DNAJC5Q9H3Z4 198 aa44.96■■■■■ 4.79
PVT1-204ENST00000517525 FANCD2Q9BXW9 1451 aa44.96■■■■■ 4.79
PVT1-204ENST00000517525 MRC2Q9UBG0 1479 aa44.96■■■■■ 4.79
PVT1-204ENST00000517525 CEP164Q9UPV0 1460 aa44.92■■■■■ 4.78
PVT1-204ENST00000517525 WDR62O43379 1518 aa44.84■■■■■ 4.77
PVT1-204ENST00000517525 PRDM2Q13029 1718 aa44.66■■■■■ 4.74
PVT1-204ENST00000517525 URB2Q14146 1524 aaKnown RBP44.53■■■■■ 4.72
PVT1-204ENST00000517525 SUPT5HO00267 1087 aaKnown RBP44.41■■■■■ 4.7
PVT1-204ENST00000517525 ABCC8Q09428 1581 aa44.26■■■■■ 4.68
PVT1-204ENST00000517525 TOPBP1Q92547 1522 aa44.2■■■■■ 4.67
PVT1-204ENST00000517525 DNMBPQ6XZF7 1577 aa44.12■■■■■ 4.65
PVT1-204ENST00000517525 IFT140Q96RY7 1462 aa44.06■■■■■ 4.64
PVT1-204ENST00000517525 POLA1P09884 1462 aaPredicted RBP43.82■■■■■ 4.6
PVT1-204ENST00000517525 ZNF608Q9ULD9 1512 aaPredicted RBP43.81■■■■■ 4.6
PVT1-204ENST00000517525 TARBP1Q13395 1621 aaKnown RBP43.74■■■■■ 4.59
PVT1-204ENST00000517525 CUX1P39880 1505 aa43.73■■■■■ 4.59
PVT1-204ENST00000517525 SOGA1O94964 1423 aa43.64■■■■■ 4.58
PVT1-204ENST00000517525 FGD5Q6ZNL6 1462 aa43.63■■■■■ 4.57
PVT1-204ENST00000517525 RAD54L2Q9Y4B4 1467 aa43.58■■■■■ 4.57
PVT1-204ENST00000517525 EIF4G3O43432 1585 aaKnown RBP43.58■■■■■ 4.57
PVT1-204ENST00000517525 OSCARQ8IYS5 282 aa43.56■■■■■ 4.56
PVT1-204ENST00000517525 AQRO60306 1485 aaKnown RBP eCLIP43.53■■■■■ 4.563e-7■■□□□ 11.6
PVT1-204ENST00000517525 WDR97A6NE52 1622 aa43.46■■■■■ 4.55
PVT1-204ENST00000517525 TDRD9Q8NDG6 1382 aaKnown RBP43.41■■■■■ 4.54
PVT1-204ENST00000517525 WRNQ14191 1432 aaPredicted RBP eCLIP43.34■■■■■ 4.53
PVT1-204ENST00000517525 TOP2BQ02880 1626 aa43.27■■■■■ 4.52
PVT1-204ENST00000517525 ABCA10Q8WWZ4 1543 aa43.27■■■■■ 4.52
PVT1-204ENST00000517525 BIVM-ERCC5R4GMW8 1640 aa43.24■■■■■ 4.51
PVT1-204ENST00000517525 GRIN2BQ13224 1484 aa43.19■■■■■ 4.5
PVT1-204ENST00000517525 SYNJ1O43426 1573 aa43.18■■■■■ 4.5
PVT1-204ENST00000517525 MAGI1Q96QZ7 1491 aaPredicted RBP43.13■■■■■ 4.49
PVT1-204ENST00000517525 GAPVD1Q14C86 1478 aa43.12■■■■■ 4.49
PVT1-204ENST00000517525 SNAPC4Q5SXM2 1469 aa43.1■■■■■ 4.49
PVT1-204ENST00000517525 ABCA5Q8WWZ7 1642 aa43.04■■■■■ 4.48
PVT1-204ENST00000517525 CHD1O14646 1710 aa43.03■■■■■ 4.48
PVT1-204ENST00000517525 FBLN2P98095 1184 aa43.01■■■■■ 4.48
PVT1-204ENST00000517525 SYNJ2O15056 1496 aa42.94■■■■■ 4.47
PVT1-204ENST00000517525 CHMP7Q8WUX9 453 aaPredicted RBP42.93■■■■■ 4.46
PVT1-204ENST00000517525 TRIM41Q8WV44 630 aa42.93■■■■■ 4.46
PVT1-204ENST00000517525 PBRM1Q86U86 1689 aa42.91■■■■■ 4.46
PVT1-204ENST00000517525 ARHGEF11O15085 1522 aa42.77■■■■■ 4.44
PVT1-204ENST00000517525 RIMBP3CA6NJZ7 1639 aa42.76■■■■■ 4.44
PVT1-204ENST00000517525 RIMBP3BA6NNM3 1639 aa42.76■■■■■ 4.44
PVT1-204ENST00000517525 RIMBP3Q9UFD9 1639 aa42.76■■■■■ 4.44
PVT1-204ENST00000517525 ERICH3Q5RHP9 1530 aa42.73■■■■■ 4.43
PVT1-204ENST00000517525 CLASP1Q7Z460 1538 aa42.71■■■■■ 4.43
PVT1-204ENST00000517525 FHAD1B1AJZ9 1412 aa42.65■■■■■ 4.42
PVT1-204ENST00000517525 ADAMTS12P58397 1594 aa42.65■■■■■ 4.42
PVT1-204ENST00000517525 GRIN2AQ12879 1464 aa42.61■■■■■ 4.41
PVT1-204ENST00000517525 NUP160Q12769 1436 aa42.5■■■■■ 4.39
PVT1-204ENST00000517525 KIF27Q86VH2 1401 aa42.49■■■■■ 4.39
PVT1-204ENST00000517525 ARAP1Q96P48 1450 aa42.42■■■■■ 4.38
PVT1-204ENST00000517525 IGF1RP08069 1367 aa42.4■■■■■ 4.38
PVT1-204ENST00000517525 CYB5RLQ6IPT4 315 aa42.39■■■■■ 4.38
PVT1-204ENST00000517525 CEP170Q5SW79 1584 aa42.35■■■■■ 4.37
PVT1-204ENST00000517525 CUL7Q14999 1698 aa42.2■■■■■ 4.35
PVT1-204ENST00000517525 SHROOM2Q13796 1616 aa42.16■■■■■ 4.34
PVT1-204ENST00000517525 CARMIL1Q5VZK9 1371 aa42.11■■■■■ 4.33
PVT1-204ENST00000517525 JPH4Q96JJ6 628 aa42.04■■■■■ 4.32
PVT1-204ENST00000517525 RUSC2Q8N2Y8 1516 aa42.01■■■■■ 4.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms