RNA–Protein interactions for RNA: ENST00000515056.5

APBB3-221, Transcript of amyloid beta precursor protein binding family B member 3, humanhuman

TSL 2

Gene APBB3, Length 2,064 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APBB3-221ENST00000515056 NISCHQ9Y2I1 1504 aa33.06■■■□□ 2.88
APBB3-221ENST00000515056 CCDC180Q9P1Z9 1646 aa29.06■■■□□ 2.24
APBB3-221ENST00000515056 ABCC9O60706 1549 aa28.1■■■□□ 2.09
APBB3-221ENST00000515056 ZCCHC6Q5VYS8 1495 aaKnown RBP27.61■■■□□ 2.01
APBB3-221ENST00000515056 DCAF8L2P0C7V8 631 aa27.6■■■□□ 2.01
APBB3-221ENST00000515056 DCAF1Q9Y4B6 1507 aa27.33■■□□□ 1.96
APBB3-221ENST00000515056 NACADO15069 1562 aa27.27■■□□□ 1.96
APBB3-221ENST00000515056 MYO15BQ96JP2 1530 aa27.25■■□□□ 1.95
APBB3-221ENST00000515056 RB1CC1Q8TDY2 1594 aa27.17■■□□□ 1.94
APBB3-221ENST00000515056 SCRIBQ14160 1630 aa26.64■■□□□ 1.85
APBB3-221ENST00000515056 UNC13AQ9UPW8 1703 aa26.56■■□□□ 1.84
APBB3-221ENST00000515056 SHROOM4Q9ULL8 1493 aa26.52■■□□□ 1.84
APBB3-221ENST00000515056 PABPN1Q86U42 306 aaKnown RBP eCLIP26.43■■□□□ 1.82
APBB3-221ENST00000515056 BICRAQ9NZM4 1560 aa26.36■■□□□ 1.81
APBB3-221ENST00000515056 CECR2Q9BXF3 1484 aa25.74■■□□□ 1.71
APBB3-221ENST00000515056 EIF4G1Q04637 1599 aaKnown RBP25.62■■□□□ 1.69
APBB3-221ENST00000515056 BAZ1AQ9NRL2 1556 aaPredicted RBP25.56■■□□□ 1.68
APBB3-221ENST00000515056 SMARCA4P51532 1647 aa25.5■■□□□ 1.67
APBB3-221ENST00000515056 MROH2BQ7Z745 1585 aa25.5■■□□□ 1.67
APBB3-221ENST00000515056 DNAJC5BQ9UF47 199 aa25.44■■□□□ 1.66
APBB3-221ENST00000515056 RSF1Q96T23 1441 aaPredicted RBP25.42■■□□□ 1.66
APBB3-221ENST00000515056 CC2D2AQ9P2K1 1620 aa25.4■■□□□ 1.66
APBB3-221ENST00000515056 ATAD2BQ9ULI0 1458 aa25.29■■□□□ 1.64
APBB3-221ENST00000515056 SUPT5HO00267 1087 aaKnown RBP25.26■■□□□ 1.63
APBB3-221ENST00000515056 WIZO95785 1651 aa25.24■■□□□ 1.63
APBB3-221ENST00000515056 SMARCA2P51531 1590 aa25.24■■□□□ 1.63
APBB3-221ENST00000515056 PEG3Q9GZU2 1588 aa25.24■■□□□ 1.63
APBB3-221ENST00000515056 NCAPD3P42695 1498 aa25.2■■□□□ 1.63
APBB3-221ENST00000515056 BAZ1BQ9UIG0 1483 aaKnown RBP25.09■■□□□ 1.61
APBB3-221ENST00000515056 HMGXB3Q12766 1538 aa25.05■■□□□ 1.6
APBB3-221ENST00000515056 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
APBB3-221ENST00000515056 CCDC88BA6NC98 1476 aa24.74■■□□□ 1.55
APBB3-221ENST00000515056 CADPSQ9ULU8 1353 aa24.52■■□□□ 1.52
APBB3-221ENST00000515056 NESP48681 1621 aa24.47■■□□□ 1.51
APBB3-221ENST00000515056 CFTRP13569 1480 aa24.45■■□□□ 1.51
APBB3-221ENST00000515056 CHIC1Q5VXU3 224 aa24.43■■□□□ 1.5
APBB3-221ENST00000515056 LAMC3Q9Y6N6 1575 aa24.41■■□□□ 1.5
APBB3-221ENST00000515056 PDS5BQ9NTI5 1447 aa24.28■■□□□ 1.48
APBB3-221ENST00000515056 FANCD2Q9BXW9 1451 aa24.21■■□□□ 1.47
APBB3-221ENST00000515056 PRDM2Q13029 1718 aa24.19■■□□□ 1.46
APBB3-221ENST00000515056 ERCC6Q03468 1493 aa24.16■■□□□ 1.46
APBB3-221ENST00000515056 KIF21AQ7Z4S6 1674 aa24.12■■□□□ 1.45
APBB3-221ENST00000515056 CEP164Q9UPV0 1460 aa24.11■■□□□ 1.45
APBB3-221ENST00000515056 ABCC8Q09428 1581 aa23.98■■□□□ 1.43
APBB3-221ENST00000515056 MRC2Q9UBG0 1479 aa23.96■■□□□ 1.43
APBB3-221ENST00000515056 WRNQ14191 1432 aaPredicted RBP eCLIP23.93■■□□□ 1.42
APBB3-221ENST00000515056 URB2Q14146 1524 aaKnown RBP23.93■■□□□ 1.42
APBB3-221ENST00000515056 THOC2Q8NI27 1593 aaKnown RBP23.89■■□□□ 1.42
APBB3-221ENST00000515056 CUX1P39880 1505 aa23.88■■□□□ 1.41
APBB3-221ENST00000515056 TOPBP1Q92547 1522 aa23.87■■□□□ 1.41
APBB3-221ENST00000515056 DNMBPQ6XZF7 1577 aa23.85■■□□□ 1.41
APBB3-221ENST00000515056 WDR62O43379 1518 aa23.84■■□□□ 1.41
APBB3-221ENST00000515056 SYNJ1O43426 1573 aa23.81■■□□□ 1.4
APBB3-221ENST00000515056 TRIM41Q8WV44 630 aa23.81■■□□□ 1.4
APBB3-221ENST00000515056 TOP2BQ02880 1626 aa23.78■■□□□ 1.4
APBB3-221ENST00000515056 BIVM-ERCC5R4GMW8 1640 aa23.74■■□□□ 1.39
APBB3-221ENST00000515056 FGD5Q6ZNL6 1462 aa23.72■■□□□ 1.39
APBB3-221ENST00000515056 POLA1P09884 1462 aaPredicted RBP23.71■■□□□ 1.39
APBB3-221ENST00000515056 HRCP23327 699 aa23.69■■□□□ 1.38
APBB3-221ENST00000515056 CUX2O14529 1486 aa23.67■■□□□ 1.38
APBB3-221ENST00000515056 SOGA1O94964 1423 aa23.67■■□□□ 1.38
APBB3-221ENST00000515056 RAD54L2Q9Y4B4 1467 aa23.64■■□□□ 1.38
APBB3-221ENST00000515056 IFT140Q96RY7 1462 aa23.58■■□□□ 1.37
APBB3-221ENST00000515056 TARBP1Q13395 1621 aaKnown RBP23.55■■□□□ 1.36
APBB3-221ENST00000515056 LOC105371045A0A1W2PR82 267 aa23.52■■□□□ 1.36
APBB3-221ENST00000515056 ABCA10Q8WWZ4 1543 aa23.51■■□□□ 1.35
APBB3-221ENST00000515056 TDRD9Q8NDG6 1382 aaKnown RBP23.5■■□□□ 1.35
APBB3-221ENST00000515056 PELP1Q8IZL8 1130 aaKnown RBP23.49■■□□□ 1.35
APBB3-221ENST00000515056 ZNF608Q9ULD9 1512 aaPredicted RBP23.48■■□□□ 1.35
APBB3-221ENST00000515056 AQRO60306 1485 aaKnown RBP eCLIP23.44■■□□□ 1.341e-6■■■■■ 41.6
APBB3-221ENST00000515056 WDR97A6NE52 1622 aa23.42■■□□□ 1.34
APBB3-221ENST00000515056 KIF27Q86VH2 1401 aa23.39■■□□□ 1.34
APBB3-221ENST00000515056 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
APBB3-221ENST00000515056 GAPVD1Q14C86 1478 aa23.37■■□□□ 1.33
APBB3-221ENST00000515056 PCGF6Q9BYE7 350 aa23.34■■□□□ 1.33
APBB3-221ENST00000515056 FAM9AQ8IZU1 332 aaPredicted RBP23.34■■□□□ 1.33
APBB3-221ENST00000515056 EIF4G3O43432 1585 aaKnown RBP23.33■■□□□ 1.33
APBB3-221ENST00000515056 ABCA5Q8WWZ7 1642 aa23.32■■□□□ 1.32
APBB3-221ENST00000515056 IGF1RP08069 1367 aa23.29■■□□□ 1.32
APBB3-221ENST00000515056 GRIN2BQ13224 1484 aa23.28■■□□□ 1.32
APBB3-221ENST00000515056 CSRNP3Q8WYN3 585 aa23.26■■□□□ 1.31
APBB3-221ENST00000515056 EEA1Q15075 1411 aa23.24■■□□□ 1.31
APBB3-221ENST00000515056 ERICH3Q5RHP9 1530 aa23.22■■□□□ 1.31
APBB3-221ENST00000515056 PBRM1Q86U86 1689 aa23.2■■□□□ 1.31
APBB3-221ENST00000515056 SNAPC4Q5SXM2 1469 aa23.17■■□□□ 1.3
APBB3-221ENST00000515056 TRIM26Q12899 539 aaPredicted RBP23.15■■□□□ 1.3
APBB3-221ENST00000515056 CARMIL1Q5VZK9 1371 aa23.15■■□□□ 1.3
APBB3-221ENST00000515056 MAGI1Q96QZ7 1491 aaPredicted RBP23.14■■□□□ 1.3
APBB3-221ENST00000515056 FBLN2P98095 1184 aa23.12■■□□□ 1.29
APBB3-221ENST00000515056 CHMP7Q8WUX9 453 aaPredicted RBP23.11■■□□□ 1.29
APBB3-221ENST00000515056 FHAD1B1AJZ9 1412 aa23.11■■□□□ 1.29
APBB3-221ENST00000515056 PRXQ9BXM0 1461 aa23.07■■□□□ 1.28
APBB3-221ENST00000515056 CUL7Q14999 1698 aa23.06■■□□□ 1.28
APBB3-221ENST00000515056 SYNJ2O15056 1496 aa23.06■■□□□ 1.28
APBB3-221ENST00000515056 ADAMTS12P58397 1594 aa23.06■■□□□ 1.28
APBB3-221ENST00000515056 RAPGEF2Q9Y4G8 1499 aa23.03■■□□□ 1.28
APBB3-221ENST00000515056 EHMT2Q96KQ7 1210 aa23.02■■□□□ 1.28
APBB3-221ENST00000515056 GRIN2AQ12879 1464 aa22.98■■□□□ 1.27
APBB3-221ENST00000515056 CHD1O14646 1710 aa22.94■■□□□ 1.26
APBB3-221ENST00000515056 KIF21BO75037 1637 aa22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms