RNA–Protein interactions for RNA: ENST00000514315.2

HMGCR-212, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

TSL 3

Gene HMGCR, Length 603 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-212ENST00000514315 AEBP2Q6ZN18 517 aaPredicted RBP21.51■■□□□ 1.03
HMGCR-212ENST00000514315 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
HMGCR-212ENST00000514315 SENP3Q9H4L4 574 aaPredicted RBP18.45■□□□□ 0.54
HMGCR-212ENST00000514315 PHF23Q9BUL5 403 aaPredicted RBP18.19■□□□□ 0.5
HMGCR-212ENST00000514315 NISCHQ9Y2I1 1504 aa18.14■□□□□ 0.49
HMGCR-212ENST00000514315 FOXD1Q16676 465 aa17.15■□□□□ 0.34
HMGCR-212ENST00000514315 ABCC9O60706 1549 aa16.76■□□□□ 0.27
HMGCR-212ENST00000514315 PLPPR3Q6T4P5 718 aa16.51■□□□□ 0.23
HMGCR-212ENST00000514315 CCDC180Q9P1Z9 1646 aa16.39■□□□□ 0.21
HMGCR-212ENST00000514315 POTEDQ86YR6 584 aa16.27■□□□□ 0.2
HMGCR-212ENST00000514315 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
HMGCR-212ENST00000514315 MSH5O43196 834 aa16.15■□□□□ 0.18
HMGCR-212ENST00000514315 PIAS4Q8N2W9 510 aaPredicted RBP16.05■□□□□ 0.16
HMGCR-212ENST00000514315 PPP6R1Q9UPN7 881 aa16.03■□□□□ 0.16
HMGCR-212ENST00000514315 ADRA2BP18089 450 aa16.01■□□□□ 0.15
HMGCR-212ENST00000514315 RB1CC1Q8TDY2 1594 aa15.75■□□□□ 0.11
HMGCR-212ENST00000514315 PABPN1Q86U42 306 aaKnown RBP eCLIP15.6■□□□□ 0.09
HMGCR-212ENST00000514315 NACADO15069 1562 aa15.58■□□□□ 0.08
HMGCR-212ENST00000514315 UNC13AQ9UPW8 1703 aa15.57■□□□□ 0.08
HMGCR-212ENST00000514315 DCAF8L2P0C7V8 631 aa15.48■□□□□ 0.07
HMGCR-212ENST00000514315 BICRAQ9NZM4 1560 aa15.43■□□□□ 0.06
HMGCR-212ENST00000514315 MYO15BQ96JP2 1530 aa15.24■□□□□ 0.03
HMGCR-212ENST00000514315 CC2D2AQ9P2K1 1620 aa15.14■□□□□ 0.01
HMGCR-212ENST00000514315 CECR2Q9BXF3 1484 aa15.11■□□□□ 0.01
HMGCR-212ENST00000514315 DNAJC5Q9H3Z4 198 aa15.05■□□□□ -0
HMGCR-212ENST00000514315 EIF4G1Q04637 1599 aaKnown RBP15□□□□□ -0.01
HMGCR-212ENST00000514315 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
HMGCR-212ENST00000514315 DCAF1Q9Y4B6 1507 aa14.93□□□□□ -0.02
HMGCR-212ENST00000514315 ZCCHC6Q5VYS8 1495 aaKnown RBP14.92□□□□□ -0.02
HMGCR-212ENST00000514315 SCRIBQ14160 1630 aa14.91□□□□□ -0.02
HMGCR-212ENST00000514315 SCAF1Q9H7N4 1312 aaKnown RBP14.78□□□□□ -0.04
HMGCR-212ENST00000514315 MAPK8IP2Q13387 824 aaPredicted RBP14.66□□□□□ -0.06
HMGCR-212ENST00000514315 DMRT2Q9Y5R5 561 aa14.61□□□□□ -0.07
HMGCR-212ENST00000514315 CUX2O14529 1486 aa14.52□□□□□ -0.08
HMGCR-212ENST00000514315 PPP4R3CPQ6ZMV5 832 aa14.44□□□□□ -0.1
HMGCR-212ENST00000514315 NCAPD3P42695 1498 aa14.44□□□□□ -0.1
HMGCR-212ENST00000514315 ERCC6Q03468 1493 aa14.39□□□□□ -0.11
HMGCR-212ENST00000514315 NESP48681 1621 aa14.35□□□□□ -0.11
HMGCR-212ENST00000514315 ATAD2BQ9ULI0 1458 aa14.32□□□□□ -0.12
HMGCR-212ENST00000514315 HMGXB3Q12766 1538 aa14.22□□□□□ -0.13
HMGCR-212ENST00000514315 THOC2Q8NI27 1593 aaKnown RBP14.22□□□□□ -0.13
HMGCR-212ENST00000514315 SMARCA4P51532 1647 aa14.21□□□□□ -0.13
HMGCR-212ENST00000514315 SMARCA2P51531 1590 aa14.2□□□□□ -0.14
HMGCR-212ENST00000514315 CNKSR2Q8WXI2 1034 aa14.19□□□□□ -0.14
HMGCR-212ENST00000514315 TRIM41Q8WV44 630 aa14.16□□□□□ -0.14
HMGCR-212ENST00000514315 KIF21AQ7Z4S6 1674 aa14.14□□□□□ -0.15
HMGCR-212ENST00000514315 LAMC3Q9Y6N6 1575 aa14.11□□□□□ -0.15
HMGCR-212ENST00000514315 HOXD11P31277 338 aaPredicted RBP14.1□□□□□ -0.15
HMGCR-212ENST00000514315 BAZ1BQ9UIG0 1483 aaKnown RBP14.1□□□□□ -0.15
HMGCR-212ENST00000514315 PEG3Q9GZU2 1588 aa14.09□□□□□ -0.15
HMGCR-212ENST00000514315 BAZ1AQ9NRL2 1556 aaPredicted RBP14.05□□□□□ -0.16
HMGCR-212ENST00000514315 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
HMGCR-212ENST00000514315 RNF216Q9NWF9 866 aaPredicted RBP14.03□□□□□ -0.16
HMGCR-212ENST00000514315 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
HMGCR-212ENST00000514315 PDS5BQ9NTI5 1447 aa14.01□□□□□ -0.17
HMGCR-212ENST00000514315 NCBP3Q53F19 620 aaKnown RBP13.99□□□□□ -0.17
HMGCR-212ENST00000514315 CADPSQ9ULU8 1353 aa13.96□□□□□ -0.18
HMGCR-212ENST00000514315 CACNB1Q02641 598 aaPredicted RBP13.95□□□□□ -0.18
HMGCR-212ENST00000514315 WDR62O43379 1518 aa13.92□□□□□ -0.18
HMGCR-212ENST00000514315 MRC2Q9UBG0 1479 aa13.92□□□□□ -0.18
HMGCR-212ENST00000514315 OSCARQ8IYS5 282 aa13.88□□□□□ -0.19
HMGCR-212ENST00000514315 WIZO95785 1651 aa13.85□□□□□ -0.19
HMGCR-212ENST00000514315 RNF39Q9H2S5 420 aa13.78□□□□□ -0.2
HMGCR-212ENST00000514315 FANCD2Q9BXW9 1451 aa13.77□□□□□ -0.21
HMGCR-212ENST00000514315 CEP164Q9UPV0 1460 aa13.77□□□□□ -0.21
HMGCR-212ENST00000514315 RIMBP3CA6NJZ7 1639 aa13.73□□□□□ -0.21
HMGCR-212ENST00000514315 RIMBP3BA6NNM3 1639 aa13.73□□□□□ -0.21
HMGCR-212ENST00000514315 RIMBP3Q9UFD9 1639 aa13.73□□□□□ -0.21
HMGCR-212ENST00000514315 URB2Q14146 1524 aaKnown RBP13.73□□□□□ -0.21
HMGCR-212ENST00000514315 CFTRP13569 1480 aa13.73□□□□□ -0.21
HMGCR-212ENST00000514315 NPM3O75607 178 aaKnown RBP13.69□□□□□ -0.22
HMGCR-212ENST00000514315 ZNF608Q9ULD9 1512 aaPredicted RBP13.63□□□□□ -0.23
HMGCR-212ENST00000514315 ARHGEF11O15085 1522 aa13.62□□□□□ -0.23
HMGCR-212ENST00000514315 CYB5RLQ6IPT4 315 aa13.6□□□□□ -0.23
HMGCR-212ENST00000514315 RSF1Q96T23 1441 aaPredicted RBP13.58□□□□□ -0.24
HMGCR-212ENST00000514315 PRDM2Q13029 1718 aa13.58□□□□□ -0.24
HMGCR-212ENST00000514315 C1QBPQ07021 282 aaKnown RBP13.57□□□□□ -0.24
HMGCR-212ENST00000514315 TOP2AP11388 1531 aaKnown RBP13.54□□□□□ -0.24
HMGCR-212ENST00000514315 IFT140Q96RY7 1462 aa13.53□□□□□ -0.24
HMGCR-212ENST00000514315 CHD1O14646 1710 aa13.5□□□□□ -0.25
HMGCR-212ENST00000514315 TOPBP1Q92547 1522 aa13.49□□□□□ -0.25
HMGCR-212ENST00000514315 TRHP20396 242 aaPredicted RBP13.49□□□□□ -0.25
HMGCR-212ENST00000514315 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.48□□□□□ -0.251e-8■■■■■ 27.7
HMGCR-212ENST00000514315 ARAP1Q96P48 1450 aa13.48□□□□□ -0.25
HMGCR-212ENST00000514315 CCDC88BA6NC98 1476 aa13.47□□□□□ -0.25
HMGCR-212ENST00000514315 AQRO60306 1485 aaKnown RBP eCLIP13.47□□□□□ -0.252e-18■■■■■ 62.4
HMGCR-212ENST00000514315 EIF4G3O43432 1585 aaKnown RBP13.46□□□□□ -0.25
HMGCR-212ENST00000514315 KCNA4P22459 653 aa13.46□□□□□ -0.25
HMGCR-212ENST00000514315 TARBP1Q13395 1621 aaKnown RBP13.44□□□□□ -0.26
HMGCR-212ENST00000514315 FBLN2P98095 1184 aa13.39□□□□□ -0.27
HMGCR-212ENST00000514315 ABCC8Q09428 1581 aa13.39□□□□□ -0.27
HMGCR-212ENST00000514315 DNMBPQ6XZF7 1577 aa13.37□□□□□ -0.27
HMGCR-212ENST00000514315 POLA1P09884 1462 aaPredicted RBP13.33□□□□□ -0.28
HMGCR-212ENST00000514315 RAD54L2Q9Y4B4 1467 aa13.33□□□□□ -0.28
HMGCR-212ENST00000514315 TDRD9Q8NDG6 1382 aaKnown RBP13.32□□□□□ -0.28
HMGCR-212ENST00000514315 CLASP1Q7Z460 1538 aa13.3□□□□□ -0.28
HMGCR-212ENST00000514315 SOGA1O94964 1423 aa13.28□□□□□ -0.28
HMGCR-212ENST00000514315 SNAPC4Q5SXM2 1469 aa13.23□□□□□ -0.29
HMGCR-212ENST00000514315 CHMP7Q8WUX9 453 aaPredicted RBP13.23□□□□□ -0.29
HMGCR-212ENST00000514315 FGD5Q6ZNL6 1462 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms