RNA–Protein interactions for RNA: ENST00000513506.5

POLR2J3-218, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 5

Gene POLR2J3, Length 958 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-218ENST00000513506 NISCHQ9Y2I1 1504 aa37.41■■■■□ 3.58
POLR2J3-218ENST00000513506 CCDC180Q9P1Z9 1646 aa33.08■■■□□ 2.89
POLR2J3-218ENST00000513506 ABCC9O60706 1549 aa31.99■■■□□ 2.71
POLR2J3-218ENST00000513506 ZCCHC6Q5VYS8 1495 aaKnown RBP31.22■■■□□ 2.59
POLR2J3-218ENST00000513506 MYO15BQ96JP2 1530 aa31.14■■■□□ 2.58
POLR2J3-218ENST00000513506 NACADO15069 1562 aa31.09■■■□□ 2.57
POLR2J3-218ENST00000513506 DCAF1Q9Y4B6 1507 aa31.08■■■□□ 2.57
POLR2J3-218ENST00000513506 RB1CC1Q8TDY2 1594 aa30.98■■■□□ 2.55
POLR2J3-218ENST00000513506 DCAF8L2P0C7V8 631 aa30.89■■■□□ 2.54
POLR2J3-218ENST00000513506 UNC13AQ9UPW8 1703 aa30.15■■■□□ 2.42
POLR2J3-218ENST00000513506 BICRAQ9NZM4 1560 aa30.07■■■□□ 2.4
POLR2J3-218ENST00000513506 SCRIBQ14160 1630 aa30.06■■■□□ 2.4
POLR2J3-218ENST00000513506 PABPN1Q86U42 306 aaKnown RBP eCLIP29.95■■■□□ 2.39
POLR2J3-218ENST00000513506 SHROOM4Q9ULL8 1493 aa29.92■■■□□ 2.38
POLR2J3-218ENST00000513506 EIF4G1Q04637 1599 aaKnown RBP29.22■■■□□ 2.27
POLR2J3-218ENST00000513506 DNAJC5BQ9UF47 199 aa29.2■■■□□ 2.26
POLR2J3-218ENST00000513506 CECR2Q9BXF3 1484 aa29.05■■■□□ 2.24
POLR2J3-218ENST00000513506 CC2D2AQ9P2K1 1620 aa28.98■■■□□ 2.23
POLR2J3-218ENST00000513506 BAZ1AQ9NRL2 1556 aaPredicted RBP28.95■■■□□ 2.22
POLR2J3-218ENST00000513506 SMARCA4P51532 1647 aa28.89■■■□□ 2.22
POLR2J3-218ENST00000513506 MROH2BQ7Z745 1585 aa28.78■■■□□ 2.2
POLR2J3-218ENST00000513506 NCAPD3P42695 1498 aa28.75■■■□□ 2.19
POLR2J3-218ENST00000513506 PEG3Q9GZU2 1588 aa28.74■■■□□ 2.19
POLR2J3-218ENST00000513506 ATAD2BQ9ULI0 1458 aa28.73■■■□□ 2.19
POLR2J3-218ENST00000513506 SMARCA2P51531 1590 aa28.69■■■□□ 2.18
POLR2J3-218ENST00000513506 RSF1Q96T23 1441 aaPredicted RBP28.62■■■□□ 2.17
POLR2J3-218ENST00000513506 HMGXB3Q12766 1538 aa28.57■■■□□ 2.16
POLR2J3-218ENST00000513506 BAZ1BQ9UIG0 1483 aaKnown RBP28.44■■■□□ 2.14
POLR2J3-218ENST00000513506 WIZO95785 1651 aa28.39■■■□□ 2.14
POLR2J3-218ENST00000513506 TOP2AP11388 1531 aaKnown RBP28.2■■■□□ 2.1
POLR2J3-218ENST00000513506 SUPT5HO00267 1087 aaKnown RBP27.9■■■□□ 2.06
POLR2J3-218ENST00000513506 CCDC88BA6NC98 1476 aa27.89■■■□□ 2.05
POLR2J3-218ENST00000513506 CADPSQ9ULU8 1353 aa27.88■■■□□ 2.05
POLR2J3-218ENST00000513506 LAMC3Q9Y6N6 1575 aa27.84■■■□□ 2.05
POLR2J3-218ENST00000513506 CFTRP13569 1480 aa27.79■■■□□ 2.04
POLR2J3-218ENST00000513506 NESP48681 1621 aa27.78■■■□□ 2.04
POLR2J3-218ENST00000513506 PDS5BQ9NTI5 1447 aa27.67■■■□□ 2.02
POLR2J3-218ENST00000513506 ERCC6Q03468 1493 aa27.53■■■□□ 2
POLR2J3-218ENST00000513506 FANCD2Q9BXW9 1451 aa27.48■■□□□ 1.99
POLR2J3-218ENST00000513506 PRDM2Q13029 1718 aa27.41■■□□□ 1.98
POLR2J3-218ENST00000513506 CEP164Q9UPV0 1460 aa27.4■■□□□ 1.98
POLR2J3-218ENST00000513506 KIF21AQ7Z4S6 1674 aa27.39■■□□□ 1.97
POLR2J3-218ENST00000513506 MRC2Q9UBG0 1479 aa27.33■■□□□ 1.97
POLR2J3-218ENST00000513506 THOC2Q8NI27 1593 aaKnown RBP27.33■■□□□ 1.97
POLR2J3-218ENST00000513506 CUX2O14529 1486 aa27.29■■□□□ 1.96
POLR2J3-218ENST00000513506 WDR62O43379 1518 aa27.25■■□□□ 1.95
POLR2J3-218ENST00000513506 URB2Q14146 1524 aaKnown RBP27.2■■□□□ 1.94
POLR2J3-218ENST00000513506 ABCC8Q09428 1581 aa27.17■■□□□ 1.94
POLR2J3-218ENST00000513506 TOPBP1Q92547 1522 aa27.08■■□□□ 1.93
POLR2J3-218ENST00000513506 DNMBPQ6XZF7 1577 aa27.06■■□□□ 1.92
POLR2J3-218ENST00000513506 CUX1P39880 1505 aa26.98■■□□□ 1.91
POLR2J3-218ENST00000513506 WRNQ14191 1432 aaPredicted RBP eCLIP26.92■■□□□ 1.91e-6■■■■■ 58.5
POLR2J3-218ENST00000513506 POLA1P09884 1462 aaPredicted RBP26.87■■□□□ 1.89
POLR2J3-218ENST00000513506 IFT140Q96RY7 1462 aa26.87■■□□□ 1.89
POLR2J3-218ENST00000513506 TOP2BQ02880 1626 aa26.83■■□□□ 1.89
POLR2J3-218ENST00000513506 FGD5Q6ZNL6 1462 aa26.81■■□□□ 1.88
POLR2J3-218ENST00000513506 BIVM-ERCC5R4GMW8 1640 aa26.8■■□□□ 1.88
POLR2J3-218ENST00000513506 SYNJ1O43426 1573 aa26.79■■□□□ 1.88
POLR2J3-218ENST00000513506 TARBP1Q13395 1621 aaKnown RBP26.77■■□□□ 1.88
POLR2J3-218ENST00000513506 SOGA1O94964 1423 aa26.77■■□□□ 1.88
POLR2J3-218ENST00000513506 RAD54L2Q9Y4B4 1467 aa26.7■■□□□ 1.87
POLR2J3-218ENST00000513506 ZNF608Q9ULD9 1512 aaPredicted RBP26.66■■□□□ 1.86
POLR2J3-218ENST00000513506 ABCA10Q8WWZ4 1543 aa26.65■■□□□ 1.86
POLR2J3-218ENST00000513506 WDR97A6NE52 1622 aa26.65■■□□□ 1.86
POLR2J3-218ENST00000513506 AQRO60306 1485 aaKnown RBP eCLIP26.55■■□□□ 1.844e-8■■■■□ 22.5
POLR2J3-218ENST00000513506 TDRD9Q8NDG6 1382 aaKnown RBP26.55■■□□□ 1.84
POLR2J3-218ENST00000513506 EIF4G3O43432 1585 aaKnown RBP26.53■■□□□ 1.84
POLR2J3-218ENST00000513506 GAPVD1Q14C86 1478 aa26.46■■□□□ 1.83
POLR2J3-218ENST00000513506 ABCA5Q8WWZ7 1642 aa26.46■■□□□ 1.83
POLR2J3-218ENST00000513506 GRIN2BQ13224 1484 aa26.44■■□□□ 1.82
POLR2J3-218ENST00000513506 TRIM41Q8WV44 630 aa26.43■■□□□ 1.82
POLR2J3-218ENST00000513506 CHIC1Q5VXU3 224 aa26.36■■□□□ 1.81
POLR2J3-218ENST00000513506 MAGI1Q96QZ7 1491 aaPredicted RBP26.36■■□□□ 1.81
POLR2J3-218ENST00000513506 KIF27Q86VH2 1401 aa26.35■■□□□ 1.81
POLR2J3-218ENST00000513506 ERICH3Q5RHP9 1530 aa26.34■■□□□ 1.81
POLR2J3-218ENST00000513506 SNAPC4Q5SXM2 1469 aa26.3■■□□□ 1.8
POLR2J3-218ENST00000513506 IGF1RP08069 1367 aa26.27■■□□□ 1.8
POLR2J3-218ENST00000513506 PBRM1Q86U86 1689 aa26.25■■□□□ 1.79
POLR2J3-218ENST00000513506 SYNJ2O15056 1496 aa26.23■■□□□ 1.79
POLR2J3-218ENST00000513506 FHAD1B1AJZ9 1412 aa26.21■■□□□ 1.79
POLR2J3-218ENST00000513506 OSCARQ8IYS5 282 aa26.19■■□□□ 1.78
POLR2J3-218ENST00000513506 ADAMTS12P58397 1594 aa26.16■■□□□ 1.78
POLR2J3-218ENST00000513506 CHMP7Q8WUX9 453 aaPredicted RBP26.14■■□□□ 1.78
POLR2J3-218ENST00000513506 RUSC2Q8N2Y8 1516 aa26.14■■□□□ 1.77
POLR2J3-218ENST00000513506 DNAJC5Q9H3Z4 198 aa26.13■■□□□ 1.77
POLR2J3-218ENST00000513506 EEA1Q15075 1411 aa26.1■■□□□ 1.77
POLR2J3-218ENST00000513506 GRIN2AQ12879 1464 aa26.09■■□□□ 1.77
POLR2J3-218ENST00000513506 CUL7Q14999 1698 aa26.07■■□□□ 1.76
POLR2J3-218ENST00000513506 CARMIL1Q5VZK9 1371 aa26.07■■□□□ 1.76
POLR2J3-218ENST00000513506 CHD1O14646 1710 aa26.06■■□□□ 1.76
POLR2J3-218ENST00000513506 FBLN2P98095 1184 aa26.06■■□□□ 1.76
POLR2J3-218ENST00000513506 NUP160Q12769 1436 aa26.03■■□□□ 1.76
POLR2J3-218ENST00000513506 PRXQ9BXM0 1461 aa25.98■■□□□ 1.75
POLR2J3-218ENST00000513506 CSRNP3Q8WYN3 585 aa25.98■■□□□ 1.75
POLR2J3-218ENST00000513506 CLASP1Q7Z460 1538 aa25.96■■□□□ 1.75
POLR2J3-218ENST00000513506 RAPGEF2Q9Y4G8 1499 aa25.93■■□□□ 1.74
POLR2J3-218ENST00000513506 CEP170Q5SW79 1584 aa25.9■■□□□ 1.74
POLR2J3-218ENST00000513506 KIAA0586Q9BVV6 1533 aa25.83■■□□□ 1.73
POLR2J3-218ENST00000513506 SHROOM2Q13796 1616 aa25.74■■□□□ 1.71
POLR2J3-218ENST00000513506 FAM9AQ8IZU1 332 aaPredicted RBP25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms