RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, humanhuman

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-215ENST00000512431 NISCHQ9Y2I1 1504 aa31.92■■■□□ 2.7
DDX41-215ENST00000512431 ABCC9O60706 1549 aa29.35■■■□□ 2.29
DDX41-215ENST00000512431 CCDC180Q9P1Z9 1646 aa28.82■■■□□ 2.2
DDX41-215ENST00000512431 DNAJC5BQ9UF47 199 aa27.94■■■□□ 2.06
DDX41-215ENST00000512431 RB1CC1Q8TDY2 1594 aa27.73■■■□□ 2.03
DDX41-215ENST00000512431 NACADO15069 1562 aa27.41■■□□□ 1.98
DDX41-215ENST00000512431 DCAF8L2P0C7V8 631 aa27.32■■□□□ 1.96
DDX41-215ENST00000512431 PABPN1Q86U42 306 aaKnown RBP eCLIP27.29■■□□□ 1.96
DDX41-215ENST00000512431 UNC13AQ9UPW8 1703 aa26.96■■□□□ 1.91
DDX41-215ENST00000512431 MYO15BQ96JP2 1530 aa26.86■■□□□ 1.89
DDX41-215ENST00000512431 BICRAQ9NZM4 1560 aa26.85■■□□□ 1.89
DDX41-215ENST00000512431 SHROOM4Q9ULL8 1493 aa26.52■■□□□ 1.84
DDX41-215ENST00000512431 CECR2Q9BXF3 1484 aa26.5■■□□□ 1.83
DDX41-215ENST00000512431 CC2D2AQ9P2K1 1620 aa26.45■■□□□ 1.82
DDX41-215ENST00000512431 DCAF1Q9Y4B6 1507 aa26.34■■□□□ 1.81
DDX41-215ENST00000512431 ZCCHC6Q5VYS8 1495 aaKnown RBP26.33■■□□□ 1.81
DDX41-215ENST00000512431 EIF4G1Q04637 1599 aaKnown RBP26.29■■□□□ 1.8
DDX41-215ENST00000512431 SCRIBQ14160 1630 aa26.25■■□□□ 1.79
DDX41-215ENST00000512431 DNAJC5Q9H3Z4 198 aa26.08■■□□□ 1.77
DDX41-215ENST00000512431 CUX2O14529 1486 aa25.51■■□□□ 1.67
DDX41-215ENST00000512431 ERCC6Q03468 1493 aa25.43■■□□□ 1.66
DDX41-215ENST00000512431 NCAPD3P42695 1498 aa25.32■■□□□ 1.64
DDX41-215ENST00000512431 ATAD2BQ9ULI0 1458 aa25.16■■□□□ 1.62
DDX41-215ENST00000512431 SMARCA2P51531 1590 aa25.09■■□□□ 1.61
DDX41-215ENST00000512431 HMGXB3Q12766 1538 aa25.05■■□□□ 1.6
DDX41-215ENST00000512431 NESP48681 1621 aa25.04■■□□□ 1.6
DDX41-215ENST00000512431 SMARCA4P51532 1647 aa24.98■■□□□ 1.59
DDX41-215ENST00000512431 BAZ1BQ9UIG0 1483 aaKnown RBP24.92■■□□□ 1.58
DDX41-215ENST00000512431 THOC2Q8NI27 1593 aaKnown RBP24.84■■□□□ 1.57
DDX41-215ENST00000512431 BAZ1AQ9NRL2 1556 aaPredicted RBP24.84■■□□□ 1.57
DDX41-215ENST00000512431 LAMC3Q9Y6N6 1575 aa24.82■■□□□ 1.56
DDX41-215ENST00000512431 TRIM41Q8WV44 630 aa24.78■■□□□ 1.56
DDX41-215ENST00000512431 PDS5BQ9NTI5 1447 aa24.76■■□□□ 1.55
DDX41-215ENST00000512431 PEG3Q9GZU2 1588 aa24.73■■□□□ 1.55
DDX41-215ENST00000512431 KIF21AQ7Z4S6 1674 aa24.66■■□□□ 1.54
DDX41-215ENST00000512431 MROH2BQ7Z745 1585 aa24.58■■□□□ 1.52
DDX41-215ENST00000512431 CADPSQ9ULU8 1353 aa24.55■■□□□ 1.52
DDX41-215ENST00000512431 MRC2Q9UBG0 1479 aa24.51■■□□□ 1.51
DDX41-215ENST00000512431 WDR62O43379 1518 aa24.43■■□□□ 1.5
DDX41-215ENST00000512431 OSCARQ8IYS5 282 aa24.35■■□□□ 1.49
DDX41-215ENST00000512431 CEP164Q9UPV0 1460 aa24.34■■□□□ 1.49
DDX41-215ENST00000512431 FANCD2Q9BXW9 1451 aa24.26■■□□□ 1.47
DDX41-215ENST00000512431 WIZO95785 1651 aa24.24■■□□□ 1.47
DDX41-215ENST00000512431 CFTRP13569 1480 aa24.13■■□□□ 1.45
DDX41-215ENST00000512431 URB2Q14146 1524 aaKnown RBP24.05■■□□□ 1.44
DDX41-215ENST00000512431 RIMBP3CA6NJZ7 1639 aa23.95■■□□□ 1.43
DDX41-215ENST00000512431 RIMBP3BA6NNM3 1639 aa23.95■■□□□ 1.43
DDX41-215ENST00000512431 RIMBP3Q9UFD9 1639 aa23.95■■□□□ 1.43
DDX41-215ENST00000512431 TOP2AP11388 1531 aaKnown RBP23.93■■□□□ 1.42
DDX41-215ENST00000512431 RSF1Q96T23 1441 aaPredicted RBP23.92■■□□□ 1.42
DDX41-215ENST00000512431 IFT140Q96RY7 1462 aa23.87■■□□□ 1.41
DDX41-215ENST00000512431 ARHGEF11O15085 1522 aa23.84■■□□□ 1.41
DDX41-215ENST00000512431 ZNF608Q9ULD9 1512 aaPredicted RBP23.84■■□□□ 1.41
DDX41-215ENST00000512431 CYB5RLQ6IPT4 315 aa23.8■■□□□ 1.4
DDX41-215ENST00000512431 PRDM2Q13029 1718 aa23.77■■□□□ 1.4
DDX41-215ENST00000512431 TRHP20396 242 aaPredicted RBP23.75■■□□□ 1.39
DDX41-215ENST00000512431 TOPBP1Q92547 1522 aa23.72■■□□□ 1.39
DDX41-215ENST00000512431 ABCC8Q09428 1581 aa23.71■■□□□ 1.39
DDX41-215ENST00000512431 CCDC88BA6NC98 1476 aa23.68■■□□□ 1.38
DDX41-215ENST00000512431 EIF4G3O43432 1585 aaKnown RBP23.66■■□□□ 1.38
DDX41-215ENST00000512431 FBLN2P98095 1184 aa23.65■■□□□ 1.38
DDX41-215ENST00000512431 AQRO60306 1485 aaKnown RBP eCLIP23.6■■□□□ 1.376e-11■■■■■ 93.1
DDX41-215ENST00000512431 DNMBPQ6XZF7 1577 aa23.59■■□□□ 1.37
DDX41-215ENST00000512431 ARAP1Q96P48 1450 aa23.56■■□□□ 1.36
DDX41-215ENST00000512431 CHD1O14646 1710 aa23.56■■□□□ 1.36
DDX41-215ENST00000512431 TARBP1Q13395 1621 aaKnown RBP23.51■■□□□ 1.35
DDX41-215ENST00000512431 POLA1P09884 1462 aaPredicted RBP23.44■■□□□ 1.34
DDX41-215ENST00000512431 AEBP2Q6ZN18 517 aaPredicted RBP23.44■■□□□ 1.34
DDX41-215ENST00000512431 TDRD9Q8NDG6 1382 aaKnown RBP23.4■■□□□ 1.34
DDX41-215ENST00000512431 SOGA1O94964 1423 aa23.4■■□□□ 1.34
DDX41-215ENST00000512431 CHMP7Q8WUX9 453 aaPredicted RBP23.39■■□□□ 1.33
DDX41-215ENST00000512431 RAD54L2Q9Y4B4 1467 aa23.38■■□□□ 1.33
DDX41-215ENST00000512431 SNAPC4Q5SXM2 1469 aa23.33■■□□□ 1.33
DDX41-215ENST00000512431 SYNJ1O43426 1573 aa23.31■■□□□ 1.32
DDX41-215ENST00000512431 CLASP1Q7Z460 1538 aa23.29■■□□□ 1.32
DDX41-215ENST00000512431 WDR97A6NE52 1622 aa23.28■■□□□ 1.32
DDX41-215ENST00000512431 MAGI1Q96QZ7 1491 aaPredicted RBP23.26■■□□□ 1.31
DDX41-215ENST00000512431 FGD5Q6ZNL6 1462 aa23.24■■□□□ 1.31
DDX41-215ENST00000512431 GRIN2BQ13224 1484 aa23.23■■□□□ 1.31
DDX41-215ENST00000512431 SYNJ2O15056 1496 aa23.19■■□□□ 1.3
DDX41-215ENST00000512431 GAPVD1Q14C86 1478 aa23.14■■□□□ 1.29
DDX41-215ENST00000512431 CUX1P39880 1505 aa23.12■■□□□ 1.29
DDX41-215ENST00000512431 PBRM1Q86U86 1689 aa23.02■■□□□ 1.28
DDX41-215ENST00000512431 ABCA10Q8WWZ4 1543 aa22.95■■□□□ 1.26
DDX41-215ENST00000512431 ABCA5Q8WWZ7 1642 aa22.91■■□□□ 1.26
DDX41-215ENST00000512431 GRIN2AQ12879 1464 aa22.91■■□□□ 1.26
DDX41-215ENST00000512431 ERCC6L2Q5T890 1561 aa22.88■■□□□ 1.25
DDX41-215ENST00000512431 CEP170Q5SW79 1584 aa22.84■■□□□ 1.25
DDX41-215ENST00000512431 NUP160Q12769 1436 aa22.82■■□□□ 1.24
DDX41-215ENST00000512431 WRNQ14191 1432 aaPredicted RBP eCLIP22.82■■□□□ 1.24
DDX41-215ENST00000512431 ADAMTS12P58397 1594 aa22.79■■□□□ 1.24
DDX41-215ENST00000512431 FHAD1B1AJZ9 1412 aa22.78■■□□□ 1.24
DDX41-215ENST00000512431 SHROOM2Q13796 1616 aa22.74■■□□□ 1.23
DDX41-215ENST00000512431 NPM1P06748 294 aaKnown RBP eCLIP22.72■■□□□ 1.23
DDX41-215ENST00000512431 PRG4Q92954 1404 aaPredicted RBP22.7■■□□□ 1.22
DDX41-215ENST00000512431 JPH4Q96JJ6 628 aa22.69■■□□□ 1.22
DDX41-215ENST00000512431 FAM69CQ0P6D2 419 aa22.68■■□□□ 1.22
DDX41-215ENST00000512431 KIF13AQ9H1H9 1805 aa22.67■■□□□ 1.22
DDX41-215ENST00000512431 ERICH3Q5RHP9 1530 aa22.66■■□□□ 1.22
DDX41-215ENST00000512431 TOP2BQ02880 1626 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms