RNA–Protein interactions for RNA: ENST00000511739.1

USP38-203, Transcript of ubiquitin specific peptidase 38, humanhuman

TSL 2

Gene USP38, Length 6,376 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-203ENST00000511739 NISCHQ9Y2I1 1504 aa10.22□□□□□ -0.77
USP38-203ENST00000511739 DCAF8L2P0C7V8 631 aa10.07□□□□□ -0.8
USP38-203ENST00000511739 FAM9AQ8IZU1 332 aaPredicted RBP9.27□□□□□ -0.93
USP38-203ENST00000511739 SUPT5HO00267 1087 aaKnown RBP9.23□□□□□ -0.93
USP38-203ENST00000511739 PELP1Q8IZL8 1130 aaKnown RBP9.23□□□□□ -0.93
USP38-203ENST00000511739 EHMT2Q96KQ7 1210 aa9.19□□□□□ -0.94
USP38-203ENST00000511739 APLP2Q06481 763 aa9.16□□□□□ -0.94
USP38-203ENST00000511739 SHROOM4Q9ULL8 1493 aa8.98□□□□□ -0.97
USP38-203ENST00000511739 ATP1B4Q9UN42 357 aaPredicted RBP8.89□□□□□ -0.99
USP38-203ENST00000511739 ERICH6Q7L0X2 663 aa8.88□□□□□ -0.99
USP38-203ENST00000511739 TTBK1Q5TCY1 1321 aaPredicted RBP8.86□□□□□ -0.99
USP38-203ENST00000511739 RANGAP1P46060 587 aaPredicted RBP8.84□□□□□ -0.99
USP38-203ENST00000511739 CCER1Q8TC90 406 aaPredicted RBP8.84□□□□□ -0.99
USP38-203ENST00000511739 MYT1LQ9UL68 1186 aa8.76□□□□□ -1.01
USP38-203ENST00000511739 PCGF6Q9BYE7 350 aa8.68□□□□□ -1.02
USP38-203ENST00000511739 CCDC180Q9P1Z9 1646 aa8.66□□□□□ -1.02
USP38-203ENST00000511739 NEFLP07196 543 aa8.63□□□□□ -1.03
USP38-203ENST00000511739 CENPBP07199 599 aaPredicted RBP8.61□□□□□ -1.03
USP38-203ENST00000511739 UBTFP17480 764 aaKnown RBP8.6□□□□□ -1.03
USP38-203ENST00000511739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.59□□□□□ -1.03
USP38-203ENST00000511739 HNRNPUL2Q1KMD3 747 aaKnown RBP8.59□□□□□ -1.03
USP38-203ENST00000511739 CHIC1Q5VXU3 224 aa8.58□□□□□ -1.04
USP38-203ENST00000511739 DAXXQ9UER7 740 aaPredicted RBP8.55□□□□□ -1.04
USP38-203ENST00000511739 ZCCHC6Q5VYS8 1495 aaKnown RBP8.54□□□□□ -1.04
USP38-203ENST00000511739 POLR3GLQ9BT43 218 aa8.54□□□□□ -1.04
USP38-203ENST00000511739 TRIM41Q8WV44 630 aa8.53□□□□□ -1.04
USP38-203ENST00000511739 SLC4A1APQ9BWU0 796 aaKnown RBP8.52□□□□□ -1.05
USP38-203ENST00000511739 ZEB1P37275 1124 aaPredicted RBP8.46□□□□□ -1.06
USP38-203ENST00000511739 YTHDC1Q96MU7 727 aaKnown RBP8.43□□□□□ -1.06
USP38-203ENST00000511739 MYT1Q01538 1121 aa8.42□□□□□ -1.06
USP38-203ENST00000511739 CNGB1Q14028 1251 aaPredicted RBP8.41□□□□□ -1.06
USP38-203ENST00000511739 ITGAEP38570 1179 aa8.39□□□□□ -1.07
USP38-203ENST00000511739 ABCC9O60706 1549 aa8.37□□□□□ -1.07
USP38-203ENST00000511739 CLSPNQ9HAW4 1339 aa8.35□□□□□ -1.07
USP38-203ENST00000511739 DCAF1Q9Y4B6 1507 aa8.35□□□□□ -1.07
USP38-203ENST00000511739 SLC24A1O60721 1099 aa8.31□□□□□ -1.08
USP38-203ENST00000511739 PPARGC1BQ86YN6 1023 aaKnown RBP8.29□□□□□ -1.08
USP38-203ENST00000511739 ZNF316A6NFI3 1004 aaPredicted RBP8.29□□□□□ -1.08
USP38-203ENST00000511739 ZBTB47Q9UFB7 747 aaPredicted RBP8.28□□□□□ -1.08
USP38-203ENST00000511739 BCANQ96GW7 911 aa8.27□□□□□ -1.09
USP38-203ENST00000511739 TRIM26Q12899 539 aaPredicted RBP8.24□□□□□ -1.09
USP38-203ENST00000511739 NACADO15069 1562 aa8.23□□□□□ -1.09
USP38-203ENST00000511739 SCRIBQ14160 1630 aa8.21□□□□□ -1.1
USP38-203ENST00000511739 BCL11AQ9H165 835 aa8.18□□□□□ -1.1
USP38-203ENST00000511739 RB1CC1Q8TDY2 1594 aa8.18□□□□□ -1.1
USP38-203ENST00000511739 RTL5Q5HYW3 569 aaPredicted RBP8.18□□□□□ -1.1
USP38-203ENST00000511739 NEFMP07197 916 aa8.17□□□□□ -1.1
USP38-203ENST00000511739 TRIM52Q96A61 297 aa8.17□□□□□ -1.1
USP38-203ENST00000511739 FBLN2P98095 1184 aa8.16□□□□□ -1.1
USP38-203ENST00000511739 ESF1Q9H501 851 aaKnown RBP8.16□□□□□ -1.1
USP38-203ENST00000511739 MYO15BQ96JP2 1530 aa8.15□□□□□ -1.1
USP38-203ENST00000511739 LOC105371045A0A1W2PR82 267 aa8.15□□□□□ -1.11
USP38-203ENST00000511739 HRCP23327 699 aa8.15□□□□□ -1.11
USP38-203ENST00000511739 FAM50AQ14320 339 aaKnown RBP8.13□□□□□ -1.11
USP38-203ENST00000511739 ZNF326Q5BKZ1 582 aaKnown RBP8.11□□□□□ -1.11
USP38-203ENST00000511739 PLPPR3Q6T4P5 718 aa8.11□□□□□ -1.11
USP38-203ENST00000511739 CANXP27824 592 aaKnown RBP8.1□□□□□ -1.11
USP38-203ENST00000511739 PABPN1Q86U42 306 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP38-203ENST00000511739 RSF1Q96T23 1441 aaPredicted RBP8.07□□□□□ -1.12
USP38-203ENST00000511739 STAG3Q9UJ98 1225 aa8.05□□□□□ -1.12
USP38-203ENST00000511739 NEUROD1Q13562 356 aa8.03□□□□□ -1.12
USP38-203ENST00000511739 A0A0G2JS52 829 aa8.01□□□□□ -1.13
USP38-203ENST00000511739 BAZ1AQ9NRL2 1556 aaPredicted RBP8□□□□□ -1.13
USP38-203ENST00000511739 SCAF1Q9H7N4 1312 aaKnown RBP7.99□□□□□ -1.13
USP38-203ENST00000511739 NPM1P06748 294 aaKnown RBP eCLIP7.99□□□□□ -1.13
USP38-203ENST00000511739 CSRNP3Q8WYN3 585 aa7.98□□□□□ -1.13
USP38-203ENST00000511739 CHGAP10645 457 aaKnown RBP7.98□□□□□ -1.13
USP38-203ENST00000511739 NPM2Q86SE8 214 aaKnown RBP7.96□□□□□ -1.13
USP38-203ENST00000511739 EEA1Q15075 1411 aa7.96□□□□□ -1.14
USP38-203ENST00000511739 ARID3CA6NKF2 412 aa7.95□□□□□ -1.14
USP38-203ENST00000511739 CDK11BP21127 795 aaKnown RBP7.95□□□□□ -1.14
USP38-203ENST00000511739 CDK11AQ9UQ88 783 aaPredicted RBP7.95□□□□□ -1.14
USP38-203ENST00000511739 ANP32CO43423 234 aa7.94□□□□□ -1.14
USP38-203ENST00000511739 ZNF777Q9ULD5 760 aaPredicted RBP7.94□□□□□ -1.14
USP38-203ENST00000511739 HSP90AA1P07900 732 aaKnown RBP7.91□□□□□ -1.14
USP38-203ENST00000511739 ANP32BQ92688 251 aaKnown RBP7.9□□□□□ -1.14
USP38-203ENST00000511739 CECR2Q9BXF3 1484 aa7.87□□□□□ -1.15
USP38-203ENST00000511739 PLEKHG5O94827 1062 aa7.86□□□□□ -1.15
USP38-203ENST00000511739 BAZ1BQ9UIG0 1483 aaKnown RBP7.86□□□□□ -1.15
USP38-203ENST00000511739 HAP1P54257 671 aaPredicted RBP7.86□□□□□ -1.15
USP38-203ENST00000511739 DIEXFQ68CQ4 756 aaKnown RBP7.86□□□□□ -1.15
USP38-203ENST00000511739 ZBTB7CA1YPR0 619 aa7.85□□□□□ -1.15
USP38-203ENST00000511739 P3H3Q8IVL6 736 aa7.85□□□□□ -1.15
USP38-203ENST00000511739 C14orf37Q86TY3 774 aa7.85□□□□□ -1.15
USP38-203ENST00000511739 MROH2BQ7Z745 1585 aa7.84□□□□□ -1.15
USP38-203ENST00000511739 UPF2Q9HAU5 1272 aaKnown RBP7.83□□□□□ -1.16
USP38-203ENST00000511739 WRNQ14191 1432 aaPredicted RBP eCLIP7.83□□□□□ -1.16
USP38-203ENST00000511739 GOLGA3Q08378 1498 aa7.81□□□□□ -1.16
USP38-203ENST00000511739 ANP32AP39687 249 aaKnown RBP7.81□□□□□ -1.16
USP38-203ENST00000511739 SMARCA2P51531 1590 aa7.81□□□□□ -1.16
USP38-203ENST00000511739 TOP2AP11388 1531 aaKnown RBP7.8□□□□□ -1.16
USP38-203ENST00000511739 ARXQ96QS3 562 aa7.8□□□□□ -1.16
USP38-203ENST00000511739 TNIKQ9UKE5 1360 aa7.79□□□□□ -1.16
USP38-203ENST00000511739 TULP1O00294 542 aaPredicted RBP7.79□□□□□ -1.16
USP38-203ENST00000511739 CEP164Q9UPV0 1460 aa7.78□□□□□ -1.16
USP38-203ENST00000511739 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP38-203ENST00000511739 NPHP1O15259 732 aa7.77□□□□□ -1.17
USP38-203ENST00000511739 PPP1R15AO75807 674 aaPredicted RBP7.77□□□□□ -1.17
USP38-203ENST00000511739 CCDC88BA6NC98 1476 aa7.76□□□□□ -1.17
USP38-203ENST00000511739 CLIP1P30622 1438 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms