RNA–Protein interactions for RNA: ENST00000511697.1

CALCOCO2-219, Transcript of calcium binding and coiled-coil domain 2, humanhuman

TSL 4

Gene CALCOCO2, Length 558 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALCOCO2-219ENST00000511697 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
CALCOCO2-219ENST00000511697 AEBP2Q6ZN18 517 aaPredicted RBP23.39■■□□□ 1.33
CALCOCO2-219ENST00000511697 CHIC1Q5VXU3 224 aa23.11■■□□□ 1.29
CALCOCO2-219ENST00000511697 ABCC9O60706 1549 aa22.36■■□□□ 1.17
CALCOCO2-219ENST00000511697 CCDC180Q9P1Z9 1646 aa22.31■■□□□ 1.16
CALCOCO2-219ENST00000511697 RB1CC1Q8TDY2 1594 aa21.24■□□□□ 0.99
CALCOCO2-219ENST00000511697 NACADO15069 1562 aa21.07■□□□□ 0.96
CALCOCO2-219ENST00000511697 DCAF8L2P0C7V8 631 aa21.01■□□□□ 0.95
CALCOCO2-219ENST00000511697 DNAJC5BQ9UF47 199 aa20.95■□□□□ 0.94
CALCOCO2-219ENST00000511697 UNC13AQ9UPW8 1703 aa20.84■□□□□ 0.93
CALCOCO2-219ENST00000511697 PABPN1Q86U42 306 aaKnown RBP eCLIP20.8■□□□□ 0.92
CALCOCO2-219ENST00000511697 MYO15BQ96JP2 1530 aa20.73■□□□□ 0.91
CALCOCO2-219ENST00000511697 BICRAQ9NZM4 1560 aa20.63■□□□□ 0.89
CALCOCO2-219ENST00000511697 ZCCHC6Q5VYS8 1495 aaKnown RBP20.58■□□□□ 0.89
CALCOCO2-219ENST00000511697 DCAF1Q9Y4B6 1507 aa20.47■□□□□ 0.87
CALCOCO2-219ENST00000511697 SCRIBQ14160 1630 aa20.38■□□□□ 0.85
CALCOCO2-219ENST00000511697 PHF23Q9BUL5 403 aaPredicted RBP20.35■□□□□ 0.85
CALCOCO2-219ENST00000511697 SHROOM4Q9ULL8 1493 aa20.29■□□□□ 0.84
CALCOCO2-219ENST00000511697 CC2D2AQ9P2K1 1620 aa20.2■□□□□ 0.82
CALCOCO2-219ENST00000511697 EIF4G1Q04637 1599 aaKnown RBP20.13■□□□□ 0.81
CALCOCO2-219ENST00000511697 CECR2Q9BXF3 1484 aa20.11■□□□□ 0.81
CALCOCO2-219ENST00000511697 SENP3Q9H4L4 574 aaPredicted RBP19.82■□□□□ 0.76
CALCOCO2-219ENST00000511697 NCAPD3P42695 1498 aa19.42■□□□□ 0.7
CALCOCO2-219ENST00000511697 SMARCA4P51532 1647 aa19.4■□□□□ 0.7
CALCOCO2-219ENST00000511697 ATAD2BQ9ULI0 1458 aa19.39■□□□□ 0.69
CALCOCO2-219ENST00000511697 SMARCA2P51531 1590 aa19.35■□□□□ 0.69
CALCOCO2-219ENST00000511697 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
CALCOCO2-219ENST00000511697 ERCC6Q03468 1493 aa19.3■□□□□ 0.68
CALCOCO2-219ENST00000511697 BAZ1AQ9NRL2 1556 aaPredicted RBP19.28■□□□□ 0.68
CALCOCO2-219ENST00000511697 CUX2O14529 1486 aa19.23■□□□□ 0.67
CALCOCO2-219ENST00000511697 BAZ1BQ9UIG0 1483 aaKnown RBP19.23■□□□□ 0.67
CALCOCO2-219ENST00000511697 DNAJC5Q9H3Z4 198 aa19.22■□□□□ 0.67
CALCOCO2-219ENST00000511697 NESP48681 1621 aa19.21■□□□□ 0.67
CALCOCO2-219ENST00000511697 PEG3Q9GZU2 1588 aa19.17■□□□□ 0.66
CALCOCO2-219ENST00000511697 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
CALCOCO2-219ENST00000511697 LAMC3Q9Y6N6 1575 aa19.03■□□□□ 0.64
CALCOCO2-219ENST00000511697 THOC2Q8NI27 1593 aaKnown RBP19.02■□□□□ 0.63
CALCOCO2-219ENST00000511697 KIF21AQ7Z4S6 1674 aa18.99■□□□□ 0.63
CALCOCO2-219ENST00000511697 WIZO95785 1651 aa18.96■□□□□ 0.63
CALCOCO2-219ENST00000511697 PLPPR3Q6T4P5 718 aa18.92■□□□□ 0.62
CALCOCO2-219ENST00000511697 PDS5BQ9NTI5 1447 aa18.9■□□□□ 0.62
CALCOCO2-219ENST00000511697 CADPSQ9ULU8 1353 aa18.84■□□□□ 0.61
CALCOCO2-219ENST00000511697 MRC2Q9UBG0 1479 aa18.77■□□□□ 0.59
CALCOCO2-219ENST00000511697 WDR62O43379 1518 aa18.73■□□□□ 0.59
CALCOCO2-219ENST00000511697 RSF1Q96T23 1441 aaPredicted RBP18.72■□□□□ 0.59
CALCOCO2-219ENST00000511697 CEP164Q9UPV0 1460 aa18.7■□□□□ 0.58
CALCOCO2-219ENST00000511697 TOP2AP11388 1531 aaKnown RBP18.68■□□□□ 0.58
CALCOCO2-219ENST00000511697 FANCD2Q9BXW9 1451 aa18.66■□□□□ 0.58
CALCOCO2-219ENST00000511697 CFTRP13569 1480 aa18.64■□□□□ 0.57
CALCOCO2-219ENST00000511697 PRDM2Q13029 1718 aa18.53■□□□□ 0.56
CALCOCO2-219ENST00000511697 URB2Q14146 1524 aaKnown RBP18.52■□□□□ 0.56
CALCOCO2-219ENST00000511697 CCDC88BA6NC98 1476 aa18.46■□□□□ 0.55
CALCOCO2-219ENST00000511697 TRIM41Q8WV44 630 aa18.45■□□□□ 0.54
CALCOCO2-219ENST00000511697 FOXD1Q16676 465 aa18.35■□□□□ 0.53
CALCOCO2-219ENST00000511697 OSCARQ8IYS5 282 aa18.33■□□□□ 0.52
CALCOCO2-219ENST00000511697 TOPBP1Q92547 1522 aa18.32■□□□□ 0.52
CALCOCO2-219ENST00000511697 ZNF608Q9ULD9 1512 aaPredicted RBP18.31■□□□□ 0.52
CALCOCO2-219ENST00000511697 IFT140Q96RY7 1462 aa18.3■□□□□ 0.52
CALCOCO2-219ENST00000511697 DNMBPQ6XZF7 1577 aa18.25■□□□□ 0.51
CALCOCO2-219ENST00000511697 EIF4G3O43432 1585 aaKnown RBP18.23■□□□□ 0.51
CALCOCO2-219ENST00000511697 ABCC8Q09428 1581 aa18.23■□□□□ 0.51
CALCOCO2-219ENST00000511697 RIMBP3CA6NJZ7 1639 aa18.17■□□□□ 0.5
CALCOCO2-219ENST00000511697 RIMBP3BA6NNM3 1639 aa18.17■□□□□ 0.5
CALCOCO2-219ENST00000511697 RIMBP3Q9UFD9 1639 aa18.17■□□□□ 0.5
CALCOCO2-219ENST00000511697 TARBP1Q13395 1621 aaKnown RBP18.16■□□□□ 0.5
CALCOCO2-219ENST00000511697 AQRO60306 1485 aaKnown RBP eCLIP18.13■□□□□ 0.496e-13■■■□□ 16.6
CALCOCO2-219ENST00000511697 POLA1P09884 1462 aaPredicted RBP18.13■□□□□ 0.49
CALCOCO2-219ENST00000511697 CHD1O14646 1710 aa18.12■□□□□ 0.49
CALCOCO2-219ENST00000511697 ARHGEF11O15085 1522 aa18.09■□□□□ 0.49
CALCOCO2-219ENST00000511697 RAD54L2Q9Y4B4 1467 aa18.07■□□□□ 0.48
CALCOCO2-219ENST00000511697 FBLN2P98095 1184 aa18.03■□□□□ 0.48
CALCOCO2-219ENST00000511697 SOGA1O94964 1423 aa18.03■□□□□ 0.48
CALCOCO2-219ENST00000511697 FGD5Q6ZNL6 1462 aa18.02■□□□□ 0.48
CALCOCO2-219ENST00000511697 TDRD9Q8NDG6 1382 aaKnown RBP18.02■□□□□ 0.47
CALCOCO2-219ENST00000511697 CUX1P39880 1505 aa18■□□□□ 0.47
CALCOCO2-219ENST00000511697 SNAPC4Q5SXM2 1469 aa17.95■□□□□ 0.46
CALCOCO2-219ENST00000511697 CYB5RLQ6IPT4 315 aa17.94■□□□□ 0.46
CALCOCO2-219ENST00000511697 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
CALCOCO2-219ENST00000511697 SUPT5HO00267 1087 aaKnown RBP17.93■□□□□ 0.46
CALCOCO2-219ENST00000511697 ADRA2BP18089 450 aa17.93■□□□□ 0.46
CALCOCO2-219ENST00000511697 ARAP1Q96P48 1450 aa17.91■□□□□ 0.46
CALCOCO2-219ENST00000511697 PBRM1Q86U86 1689 aa17.88■□□□□ 0.45
CALCOCO2-219ENST00000511697 PPP6R1Q9UPN7 881 aa17.88■□□□□ 0.45
CALCOCO2-219ENST00000511697 GRIN2BQ13224 1484 aa17.88■□□□□ 0.45
CALCOCO2-219ENST00000511697 MAGI1Q96QZ7 1491 aaPredicted RBP17.88■□□□□ 0.45
CALCOCO2-219ENST00000511697 CHMP7Q8WUX9 453 aaPredicted RBP17.86■□□□□ 0.45
CALCOCO2-219ENST00000511697 CLASP1Q7Z460 1538 aa17.86■□□□□ 0.45
CALCOCO2-219ENST00000511697 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
CALCOCO2-219ENST00000511697 SYNJ2O15056 1496 aa17.82■□□□□ 0.44
CALCOCO2-219ENST00000511697 GAPVD1Q14C86 1478 aa17.82■□□□□ 0.44
CALCOCO2-219ENST00000511697 ABCA5Q8WWZ7 1642 aa17.8■□□□□ 0.44
CALCOCO2-219ENST00000511697 ABCA10Q8WWZ4 1543 aa17.79■□□□□ 0.44
CALCOCO2-219ENST00000511697 TRHP20396 242 aaPredicted RBP17.77■□□□□ 0.44
CALCOCO2-219ENST00000511697 BIVM-ERCC5R4GMW8 1640 aa17.72■□□□□ 0.43
CALCOCO2-219ENST00000511697 WRNQ14191 1432 aaPredicted RBP eCLIP17.71■□□□□ 0.43
CALCOCO2-219ENST00000511697 TOP2BQ02880 1626 aa17.7■□□□□ 0.42
CALCOCO2-219ENST00000511697 ADAMTS12P58397 1594 aa17.67■□□□□ 0.42
CALCOCO2-219ENST00000511697 GRIN2AQ12879 1464 aa17.66■□□□□ 0.42
CALCOCO2-219ENST00000511697 CEP170Q5SW79 1584 aa17.62■□□□□ 0.41
CALCOCO2-219ENST00000511697 ERCC6L2Q5T890 1561 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms