RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 NISCHQ9Y2I1 1504 aa38.03■■■■□ 3.68
TPM3-219ENST00000509409 ABCC9O60706 1549 aa34.04■■■■□ 3.04
TPM3-219ENST00000509409 CCDC180Q9P1Z9 1646 aa33.93■■■■□ 3.02
TPM3-219ENST00000509409 DCAF8L2P0C7V8 631 aa32.37■■■□□ 2.77
TPM3-219ENST00000509409 RB1CC1Q8TDY2 1594 aa32.36■■■□□ 2.77
TPM3-219ENST00000509409 NACADO15069 1562 aa32.16■■■□□ 2.74
TPM3-219ENST00000509409 DNAJC5BQ9UF47 199 aa31.86■■■□□ 2.69
TPM3-219ENST00000509409 PABPN1Q86U42 306 aaKnown RBP eCLIP31.82■■■□□ 2.68
TPM3-219ENST00000509409 MYO15BQ96JP2 1530 aa31.71■■■□□ 2.67
TPM3-219ENST00000509409 ZCCHC6Q5VYS8 1495 aaKnown RBP31.5■■■□□ 2.63
TPM3-219ENST00000509409 UNC13AQ9UPW8 1703 aa31.46■■■□□ 2.63
TPM3-219ENST00000509409 DCAF1Q9Y4B6 1507 aa31.36■■■□□ 2.61
TPM3-219ENST00000509409 BICRAQ9NZM4 1560 aa31.34■■■□□ 2.61
TPM3-219ENST00000509409 SCRIBQ14160 1630 aa31.06■■■□□ 2.56
TPM3-219ENST00000509409 SHROOM4Q9ULL8 1493 aa30.94■■■□□ 2.54
TPM3-219ENST00000509409 CC2D2AQ9P2K1 1620 aa30.65■■■□□ 2.5
TPM3-219ENST00000509409 CECR2Q9BXF3 1484 aa30.63■■■□□ 2.49
TPM3-219ENST00000509409 EIF4G1Q04637 1599 aaKnown RBP30.62■■■□□ 2.49
TPM3-219ENST00000509409 NCAPD3P42695 1498 aa29.73■■■□□ 2.35
TPM3-219ENST00000509409 ATAD2BQ9ULI0 1458 aa29.67■■■□□ 2.34
TPM3-219ENST00000509409 SMARCA4P51532 1647 aa29.59■■■□□ 2.33
TPM3-219ENST00000509409 SMARCA2P51531 1590 aa29.56■■■□□ 2.32
TPM3-219ENST00000509409 BAZ1AQ9NRL2 1556 aaPredicted RBP29.5■■■□□ 2.31
TPM3-219ENST00000509409 HMGXB3Q12766 1538 aa29.44■■■□□ 2.3
TPM3-219ENST00000509409 ERCC6Q03468 1493 aa29.41■■■□□ 2.3
TPM3-219ENST00000509409 BAZ1BQ9UIG0 1483 aaKnown RBP29.4■■■□□ 2.3
TPM3-219ENST00000509409 MROH2BQ7Z745 1585 aa29.31■■■□□ 2.28
TPM3-219ENST00000509409 PEG3Q9GZU2 1588 aa29.26■■■□□ 2.27
TPM3-219ENST00000509409 NESP48681 1621 aa29.23■■■□□ 2.27
TPM3-219ENST00000509409 CUX2O14529 1486 aa29.23■■■□□ 2.27
TPM3-219ENST00000509409 DNAJC5Q9H3Z4 198 aa29.18■■■□□ 2.26
TPM3-219ENST00000509409 LAMC3Q9Y6N6 1575 aa28.99■■■□□ 2.23
TPM3-219ENST00000509409 PDS5BQ9NTI5 1447 aa28.94■■■□□ 2.22
TPM3-219ENST00000509409 WIZO95785 1651 aa28.93■■■□□ 2.22
TPM3-219ENST00000509409 CADPSQ9ULU8 1353 aa28.89■■■□□ 2.22
TPM3-219ENST00000509409 RSF1Q96T23 1441 aaPredicted RBP28.79■■■□□ 2.2
TPM3-219ENST00000509409 THOC2Q8NI27 1593 aaKnown RBP28.79■■■□□ 2.2
TPM3-219ENST00000509409 KIF21AQ7Z4S6 1674 aa28.74■■■□□ 2.19
TPM3-219ENST00000509409 MRC2Q9UBG0 1479 aa28.61■■■□□ 2.17
TPM3-219ENST00000509409 TOP2AP11388 1531 aaKnown RBP28.58■■■□□ 2.17
TPM3-219ENST00000509409 FANCD2Q9BXW9 1451 aa28.53■■■□□ 2.16
TPM3-219ENST00000509409 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
TPM3-219ENST00000509409 CFTRP13569 1480 aa28.53■■■□□ 2.16
TPM3-219ENST00000509409 WDR62O43379 1518 aa28.47■■■□□ 2.15
TPM3-219ENST00000509409 CCDC88BA6NC98 1476 aa28.34■■■□□ 2.13
TPM3-219ENST00000509409 URB2Q14146 1524 aaKnown RBP28.25■■■□□ 2.11
TPM3-219ENST00000509409 OSCARQ8IYS5 282 aa28.08■■■□□ 2.09
TPM3-219ENST00000509409 TRIM41Q8WV44 630 aa28.06■■■□□ 2.08
TPM3-219ENST00000509409 PRDM2Q13029 1718 aa28.06■■■□□ 2.08
TPM3-219ENST00000509409 TOPBP1Q92547 1522 aa27.97■■■□□ 2.07
TPM3-219ENST00000509409 IFT140Q96RY7 1462 aa27.97■■■□□ 2.07
TPM3-219ENST00000509409 ABCC8Q09428 1581 aa27.95■■■□□ 2.07
TPM3-219ENST00000509409 ZNF608Q9ULD9 1512 aaPredicted RBP27.91■■■□□ 2.06
TPM3-219ENST00000509409 DNMBPQ6XZF7 1577 aa27.85■■■□□ 2.05
TPM3-219ENST00000509409 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
TPM3-219ENST00000509409 AQRO60306 1485 aaKnown RBP eCLIP27.73■■■□□ 2.034e-7■■□□□ 12.7
TPM3-219ENST00000509409 POLA1P09884 1462 aaPredicted RBP27.7■■■□□ 2.02
TPM3-219ENST00000509409 SOGA1O94964 1423 aa27.67■■■□□ 2.02
TPM3-219ENST00000509409 FBLN2P98095 1184 aa27.67■■■□□ 2.02
TPM3-219ENST00000509409 EIF4G3O43432 1585 aaKnown RBP27.67■■■□□ 2.02
TPM3-219ENST00000509409 RAD54L2Q9Y4B4 1467 aa27.65■■■□□ 2.02
TPM3-219ENST00000509409 TARBP1Q13395 1621 aaKnown RBP27.64■■■□□ 2.02
TPM3-219ENST00000509409 TDRD9Q8NDG6 1382 aaKnown RBP27.61■■■□□ 2.01
TPM3-219ENST00000509409 AEBP2Q6ZN18 517 aaPredicted RBP27.57■■■□□ 2
TPM3-219ENST00000509409 FGD5Q6ZNL6 1462 aa27.56■■■□□ 2
TPM3-219ENST00000509409 CUX1P39880 1505 aa27.52■■■□□ 2
TPM3-219ENST00000509409 RIMBP3CA6NJZ7 1639 aa27.49■■□□□ 1.99
TPM3-219ENST00000509409 RIMBP3BA6NNM3 1639 aa27.49■■□□□ 1.99
TPM3-219ENST00000509409 RIMBP3Q9UFD9 1639 aa27.49■■□□□ 1.99
TPM3-219ENST00000509409 ARHGEF11O15085 1522 aa27.46■■□□□ 1.99
TPM3-219ENST00000509409 CHMP7Q8WUX9 453 aaPredicted RBP27.45■■□□□ 1.98
TPM3-219ENST00000509409 CYB5RLQ6IPT4 315 aa27.44■■□□□ 1.98
TPM3-219ENST00000509409 CHD1O14646 1710 aa27.41■■□□□ 1.98
TPM3-219ENST00000509409 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
TPM3-219ENST00000509409 GRIN2BQ13224 1484 aa27.36■■□□□ 1.97
TPM3-219ENST00000509409 WDR97A6NE52 1622 aa27.35■■□□□ 1.97
TPM3-219ENST00000509409 MAGI1Q96QZ7 1491 aaPredicted RBP27.31■■□□□ 1.96
TPM3-219ENST00000509409 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
TPM3-219ENST00000509409 ABCA10Q8WWZ4 1543 aa27.23■■□□□ 1.95
TPM3-219ENST00000509409 SYNJ2O15056 1496 aa27.23■■□□□ 1.95
TPM3-219ENST00000509409 WRNQ14191 1432 aaPredicted RBP eCLIP27.23■■□□□ 1.959e-7■■■□□ 18.8
TPM3-219ENST00000509409 ARAP1Q96P48 1450 aa27.2■■□□□ 1.95
TPM3-219ENST00000509409 SYNJ1O43426 1573 aa27.19■■□□□ 1.94
TPM3-219ENST00000509409 TRHP20396 242 aaPredicted RBP27.14■■□□□ 1.94
TPM3-219ENST00000509409 CLASP1Q7Z460 1538 aa27.13■■□□□ 1.93
TPM3-219ENST00000509409 PBRM1Q86U86 1689 aa27.11■■□□□ 1.93
TPM3-219ENST00000509409 ABCA5Q8WWZ7 1642 aa27.09■■□□□ 1.93
TPM3-219ENST00000509409 TOP2BQ02880 1626 aa27.08■■□□□ 1.93
TPM3-219ENST00000509409 BIVM-ERCC5R4GMW8 1640 aa27.04■■□□□ 1.92
TPM3-219ENST00000509409 GRIN2AQ12879 1464 aa26.97■■□□□ 1.91
TPM3-219ENST00000509409 FHAD1B1AJZ9 1412 aa26.95■■□□□ 1.9
TPM3-219ENST00000509409 ADAMTS12P58397 1594 aa26.9■■□□□ 1.9
TPM3-219ENST00000509409 ERICH3Q5RHP9 1530 aa26.88■■□□□ 1.89
TPM3-219ENST00000509409 NUP160Q12769 1436 aa26.87■■□□□ 1.89
TPM3-219ENST00000509409 CEP170Q5SW79 1584 aa26.83■■□□□ 1.89
TPM3-219ENST00000509409 ERCC6L2Q5T890 1561 aa26.76■■□□□ 1.87
TPM3-219ENST00000509409 JPH4Q96JJ6 628 aa26.76■■□□□ 1.87
TPM3-219ENST00000509409 PRG4Q92954 1404 aaPredicted RBP26.69■■□□□ 1.86
TPM3-219ENST00000509409 KIF27Q86VH2 1401 aa26.68■■□□□ 1.86
TPM3-219ENST00000509409 IGF1RP08069 1367 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms