RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 AEBP2Q6ZN18 517 aaPredicted RBP21■□□□□ 0.95
TOPBP1-207ENST00000509162 CHIC1Q5VXU3 224 aa20.15■□□□□ 0.82
TOPBP1-207ENST00000509162 SENP3Q9H4L4 574 aaPredicted RBP17.96■□□□□ 0.47
TOPBP1-207ENST00000509162 NISCHQ9Y2I1 1504 aa17.94■□□□□ 0.46
TOPBP1-207ENST00000509162 PHF23Q9BUL5 403 aaPredicted RBP17.7■□□□□ 0.42
TOPBP1-207ENST00000509162 POTEDQ86YR6 584 aa17.01■□□□□ 0.31
TOPBP1-207ENST00000509162 FOXD1Q16676 465 aa16.66■□□□□ 0.26
TOPBP1-207ENST00000509162 PLPPR3Q6T4P5 718 aa16.19■□□□□ 0.18
TOPBP1-207ENST00000509162 CCDC180Q9P1Z9 1646 aa15.96■□□□□ 0.15
TOPBP1-207ENST00000509162 PPP6R1Q9UPN7 881 aa15.67■□□□□ 0.1
TOPBP1-207ENST00000509162 ADRA2BP18089 450 aa15.63■□□□□ 0.09
TOPBP1-207ENST00000509162 PIAS4Q8N2W9 510 aaPredicted RBP15.62■□□□□ 0.09
TOPBP1-207ENST00000509162 MSH5O43196 834 aa15.61■□□□□ 0.09
TOPBP1-207ENST00000509162 ABCC9O60706 1549 aa15.57■□□□□ 0.08
TOPBP1-207ENST00000509162 ZCCHC6Q5VYS8 1495 aaKnown RBP15.01□□□□□ -0.01
TOPBP1-207ENST00000509162 RB1CC1Q8TDY2 1594 aa14.94□□□□□ -0.02
TOPBP1-207ENST00000509162 NACADO15069 1562 aa14.93□□□□□ -0.02
TOPBP1-207ENST00000509162 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
TOPBP1-207ENST00000509162 DCAF1Q9Y4B6 1507 aa14.84□□□□□ -0.03
TOPBP1-207ENST00000509162 UNC13AQ9UPW8 1703 aa14.76□□□□□ -0.05
TOPBP1-207ENST00000509162 DCAF8L2P0C7V8 631 aa14.69□□□□□ -0.06
TOPBP1-207ENST00000509162 BICRAQ9NZM4 1560 aa14.66□□□□□ -0.06
TOPBP1-207ENST00000509162 SCRIBQ14160 1630 aa14.59□□□□□ -0.07
TOPBP1-207ENST00000509162 PABPN1Q86U42 306 aaKnown RBP eCLIP14.48□□□□□ -0.09
TOPBP1-207ENST00000509162 SCAF1Q9H7N4 1312 aaKnown RBP14.4□□□□□ -0.1
TOPBP1-207ENST00000509162 SHROOM4Q9ULL8 1493 aa14.36□□□□□ -0.11
TOPBP1-207ENST00000509162 DNAJC5BQ9UF47 199 aa14.31□□□□□ -0.12
TOPBP1-207ENST00000509162 MAPK8IP2Q13387 824 aaPredicted RBP14.29□□□□□ -0.12
TOPBP1-207ENST00000509162 DMRT2Q9Y5R5 561 aa14.26□□□□□ -0.13
TOPBP1-207ENST00000509162 EIF4G1Q04637 1599 aaKnown RBP14.18□□□□□ -0.14
TOPBP1-207ENST00000509162 PPP4R3CPQ6ZMV5 832 aa14.18□□□□□ -0.14
TOPBP1-207ENST00000509162 CC2D2AQ9P2K1 1620 aa14.12□□□□□ -0.15
TOPBP1-207ENST00000509162 CECR2Q9BXF3 1484 aa14.03□□□□□ -0.16
TOPBP1-207ENST00000509162 SMARCA4P51532 1647 aa13.95□□□□□ -0.18
TOPBP1-207ENST00000509162 CNKSR2Q8WXI2 1034 aa13.91□□□□□ -0.18
TOPBP1-207ENST00000509162 CACNB1Q02641 598 aaPredicted RBP13.88□□□□□ -0.19
TOPBP1-207ENST00000509162 MROH2BQ7Z745 1585 aa13.88□□□□□ -0.19
TOPBP1-207ENST00000509162 BAZ1AQ9NRL2 1556 aaPredicted RBP13.86□□□□□ -0.19
TOPBP1-207ENST00000509162 ATAD2BQ9ULI0 1458 aa13.84□□□□□ -0.19
TOPBP1-207ENST00000509162 PEG3Q9GZU2 1588 aa13.83□□□□□ -0.2
TOPBP1-207ENST00000509162 HOXD11P31277 338 aaPredicted RBP13.81□□□□□ -0.2
TOPBP1-207ENST00000509162 NCAPD3P42695 1498 aa13.79□□□□□ -0.2
TOPBP1-207ENST00000509162 HMGXB3Q12766 1538 aa13.77□□□□□ -0.21
TOPBP1-207ENST00000509162 SMARCA2P51531 1590 aa13.76□□□□□ -0.21
TOPBP1-207ENST00000509162 RNF216Q9NWF9 866 aaPredicted RBP13.76□□□□□ -0.21
TOPBP1-207ENST00000509162 NCBP3Q53F19 620 aaKnown RBP13.73□□□□□ -0.21
TOPBP1-207ENST00000509162 WIZO95785 1651 aa13.72□□□□□ -0.21
TOPBP1-207ENST00000509162 RSF1Q96T23 1441 aaPredicted RBP13.67□□□□□ -0.22
TOPBP1-207ENST00000509162 BAZ1BQ9UIG0 1483 aaKnown RBP13.67□□□□□ -0.22
TOPBP1-207ENST00000509162 DCAF8L1A6NGE4 600 aa13.58□□□□□ -0.24
TOPBP1-207ENST00000509162 TOP2AP11388 1531 aaKnown RBP13.56□□□□□ -0.24
TOPBP1-207ENST00000509162 NESP48681 1621 aa13.54□□□□□ -0.24
TOPBP1-207ENST00000509162 NPM3O75607 178 aaKnown RBP13.47□□□□□ -0.25
TOPBP1-207ENST00000509162 LAMC3Q9Y6N6 1575 aa13.41□□□□□ -0.26
TOPBP1-207ENST00000509162 KCNA4P22459 653 aa13.4□□□□□ -0.26
TOPBP1-207ENST00000509162 THOC2Q8NI27 1593 aaKnown RBP13.39□□□□□ -0.27
TOPBP1-207ENST00000509162 KIF21AQ7Z4S6 1674 aa13.39□□□□□ -0.27
TOPBP1-207ENST00000509162 CCDC88BA6NC98 1476 aa13.36□□□□□ -0.27
TOPBP1-207ENST00000509162 CADPSQ9ULU8 1353 aa13.34□□□□□ -0.27
TOPBP1-207ENST00000509162 CFTRP13569 1480 aa13.33□□□□□ -0.28
TOPBP1-207ENST00000509162 ERCC6Q03468 1493 aa13.31□□□□□ -0.28
TOPBP1-207ENST00000509162 RNF39Q9H2S5 420 aa13.31□□□□□ -0.28
TOPBP1-207ENST00000509162 PRDM2Q13029 1718 aa13.28□□□□□ -0.28
TOPBP1-207ENST00000509162 FANCD2Q9BXW9 1451 aa13.23□□□□□ -0.29
TOPBP1-207ENST00000509162 PDS5BQ9NTI5 1447 aa13.23□□□□□ -0.29
TOPBP1-207ENST00000509162 WDR62O43379 1518 aa13.23□□□□□ -0.29
TOPBP1-207ENST00000509162 CUX2O14529 1486 aa13.23□□□□□ -0.29
TOPBP1-207ENST00000509162 MRC2Q9UBG0 1479 aa13.21□□□□□ -0.3
TOPBP1-207ENST00000509162 CEP164Q9UPV0 1460 aa13.21□□□□□ -0.3
TOPBP1-207ENST00000509162 URB2Q14146 1524 aaKnown RBP13.18□□□□□ -0.3
TOPBP1-207ENST00000509162 SUPT5HO00267 1087 aaKnown RBP13.15□□□□□ -0.3
TOPBP1-207ENST00000509162 C1QBPQ07021 282 aaKnown RBP13.14□□□□□ -0.31
TOPBP1-207ENST00000509162 EHMT2Q96KQ7 1210 aa13.14□□□□□ -0.31
TOPBP1-207ENST00000509162 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.11□□□□□ -0.315e-8■■□□□ 14.3
TOPBP1-207ENST00000509162 POTEHQ6S545 545 aa13.09□□□□□ -0.31
TOPBP1-207ENST00000509162 TOPBP1Q92547 1522 aa13.06□□□□□ -0.32
TOPBP1-207ENST00000509162 DNMBPQ6XZF7 1577 aa13.05□□□□□ -0.32
TOPBP1-207ENST00000509162 CUX1P39880 1505 aa13.03□□□□□ -0.32
TOPBP1-207ENST00000509162 TARBP1Q13395 1621 aaKnown RBP12.98□□□□□ -0.33
TOPBP1-207ENST00000509162 POLA1P09884 1462 aaPredicted RBP12.97□□□□□ -0.33
TOPBP1-207ENST00000509162 ZNF608Q9ULD9 1512 aaPredicted RBP12.96□□□□□ -0.33
TOPBP1-207ENST00000509162 SYNJ1O43426 1573 aa12.94□□□□□ -0.34
TOPBP1-207ENST00000509162 ABCC8Q09428 1581 aa12.94□□□□□ -0.34
TOPBP1-207ENST00000509162 WDR97A6NE52 1622 aa12.93□□□□□ -0.34
TOPBP1-207ENST00000509162 FGD5Q6ZNL6 1462 aa12.92□□□□□ -0.34
TOPBP1-207ENST00000509162 EIF4G3O43432 1585 aaKnown RBP12.92□□□□□ -0.34
TOPBP1-207ENST00000509162 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
TOPBP1-207ENST00000509162 BIVM-ERCC5R4GMW8 1640 aa12.91□□□□□ -0.34
TOPBP1-207ENST00000509162 RAD54L2Q9Y4B4 1467 aa12.91□□□□□ -0.34
TOPBP1-207ENST00000509162 TOP2BQ02880 1626 aa12.87□□□□□ -0.35
TOPBP1-207ENST00000509162 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
TOPBP1-207ENST00000509162 CSRNP3Q8WYN3 585 aa12.84□□□□□ -0.35
TOPBP1-207ENST00000509162 WRNQ14191 1432 aaPredicted RBP eCLIP12.83□□□□□ -0.36
TOPBP1-207ENST00000509162 SLC4A1APQ9BWU0 796 aaKnown RBP12.83□□□□□ -0.36
TOPBP1-207ENST00000509162 ABCA5Q8WWZ7 1642 aa12.82□□□□□ -0.36
TOPBP1-207ENST00000509162 SLC4A2P04920 1241 aa12.82□□□□□ -0.36
TOPBP1-207ENST00000509162 AQRO60306 1485 aaKnown RBP eCLIP12.81□□□□□ -0.36
TOPBP1-207ENST00000509162 ABCA10Q8WWZ4 1543 aa12.79□□□□□ -0.36
TOPBP1-207ENST00000509162 SOGA1O94964 1423 aa12.79□□□□□ -0.36
TOPBP1-207ENST00000509162 PBRM1Q86U86 1689 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms