RNA–Protein interactions for RNA: ENST00000508902.5

CLDND1-220, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-220ENST00000508902 NISCHQ9Y2I1 1504 aa44.75■■■■■ 4.76
CLDND1-220ENST00000508902 CCDC180Q9P1Z9 1646 aa39.82■■■■□ 3.96
CLDND1-220ENST00000508902 ABCC9O60706 1549 aa39.01■■■■□ 3.84
CLDND1-220ENST00000508902 RB1CC1Q8TDY2 1594 aa37.43■■■■□ 3.58
CLDND1-220ENST00000508902 NACADO15069 1562 aa37.38■■■■□ 3.58
CLDND1-220ENST00000508902 ZCCHC6Q5VYS8 1495 aaKnown RBP37.31■■■■□ 3.56
CLDND1-220ENST00000508902 DCAF8L2P0C7V8 631 aa37.18■■■■□ 3.54
CLDND1-220ENST00000508902 MYO15BQ96JP2 1530 aa37.15■■■■□ 3.54
CLDND1-220ENST00000508902 DCAF1Q9Y4B6 1507 aa37■■■■□ 3.51
CLDND1-220ENST00000508902 UNC13AQ9UPW8 1703 aa36.82■■■■□ 3.49
CLDND1-220ENST00000508902 BICRAQ9NZM4 1560 aa36.51■■■■□ 3.44
CLDND1-220ENST00000508902 PABPN1Q86U42 306 aaKnown RBP eCLIP36.41■■■■□ 3.42
CLDND1-220ENST00000508902 SCRIBQ14160 1630 aa36.37■■■■□ 3.41
CLDND1-220ENST00000508902 DNAJC5BQ9UF47 199 aa35.95■■■■□ 3.35
CLDND1-220ENST00000508902 SHROOM4Q9ULL8 1493 aa35.89■■■■□ 3.34
CLDND1-220ENST00000508902 EIF4G1Q04637 1599 aaKnown RBP35.44■■■■□ 3.26
CLDND1-220ENST00000508902 CC2D2AQ9P2K1 1620 aa35.32■■■■□ 3.25
CLDND1-220ENST00000508902 CECR2Q9BXF3 1484 aa35.02■■■■□ 3.2
CLDND1-220ENST00000508902 SMARCA4P51532 1647 aa34.77■■■■□ 3.16
CLDND1-220ENST00000508902 BAZ1AQ9NRL2 1556 aaPredicted RBP34.63■■■■□ 3.13
CLDND1-220ENST00000508902 ATAD2BQ9ULI0 1458 aa34.56■■■■□ 3.12
CLDND1-220ENST00000508902 MROH2BQ7Z745 1585 aa34.56■■■■□ 3.12
CLDND1-220ENST00000508902 NCAPD3P42695 1498 aa34.51■■■■□ 3.11
CLDND1-220ENST00000508902 SMARCA2P51531 1590 aa34.45■■■■□ 3.1
CLDND1-220ENST00000508902 PEG3Q9GZU2 1588 aa34.43■■■■□ 3.1
CLDND1-220ENST00000508902 HMGXB3Q12766 1538 aa34.37■■■■□ 3.09
CLDND1-220ENST00000508902 BAZ1BQ9UIG0 1483 aaKnown RBP34.2■■■■□ 3.07
CLDND1-220ENST00000508902 WIZO95785 1651 aa34.19■■■■□ 3.06
CLDND1-220ENST00000508902 RSF1Q96T23 1441 aaPredicted RBP34.08■■■■□ 3.05
CLDND1-220ENST00000508902 NESP48681 1621 aa33.82■■■■□ 3.01
CLDND1-220ENST00000508902 TOP2AP11388 1531 aaKnown RBP33.75■■■□□ 2.99
CLDND1-220ENST00000508902 LAMC3Q9Y6N6 1575 aa33.6■■■□□ 2.97
CLDND1-220ENST00000508902 ERCC6Q03468 1493 aa33.5■■■□□ 2.95
CLDND1-220ENST00000508902 CADPSQ9ULU8 1353 aa33.47■■■□□ 2.95
CLDND1-220ENST00000508902 KIF21AQ7Z4S6 1674 aa33.44■■■□□ 2.94
CLDND1-220ENST00000508902 CCDC88BA6NC98 1476 aa33.36■■■□□ 2.93
CLDND1-220ENST00000508902 THOC2Q8NI27 1593 aaKnown RBP33.34■■■□□ 2.93
CLDND1-220ENST00000508902 CFTRP13569 1480 aa33.31■■■□□ 2.92
CLDND1-220ENST00000508902 PDS5BQ9NTI5 1447 aa33.28■■■□□ 2.92
CLDND1-220ENST00000508902 CUX2O14529 1486 aa33.23■■■□□ 2.91
CLDND1-220ENST00000508902 PRDM2Q13029 1718 aa33.14■■■□□ 2.89
CLDND1-220ENST00000508902 FANCD2Q9BXW9 1451 aa33.12■■■□□ 2.89
CLDND1-220ENST00000508902 CEP164Q9UPV0 1460 aa33.05■■■□□ 2.88
CLDND1-220ENST00000508902 MRC2Q9UBG0 1479 aa33.05■■■□□ 2.88
CLDND1-220ENST00000508902 SUPT5HO00267 1087 aaKnown RBP33.01■■■□□ 2.87
CLDND1-220ENST00000508902 WDR62O43379 1518 aa33.01■■■□□ 2.87
CLDND1-220ENST00000508902 URB2Q14146 1524 aaKnown RBP32.89■■■□□ 2.86
CLDND1-220ENST00000508902 TOPBP1Q92547 1522 aa32.62■■■□□ 2.81
CLDND1-220ENST00000508902 DNMBPQ6XZF7 1577 aa32.58■■■□□ 2.81
CLDND1-220ENST00000508902 ABCC8Q09428 1581 aa32.45■■■□□ 2.78
CLDND1-220ENST00000508902 CUX1P39880 1505 aa32.41■■■□□ 2.78
CLDND1-220ENST00000508902 ZNF608Q9ULD9 1512 aaPredicted RBP32.36■■■□□ 2.77
CLDND1-220ENST00000508902 POLA1P09884 1462 aaPredicted RBP32.35■■■□□ 2.77
CLDND1-220ENST00000508902 IFT140Q96RY7 1462 aa32.35■■■□□ 2.77
CLDND1-220ENST00000508902 DNAJC5Q9H3Z4 198 aa32.35■■■□□ 2.77
CLDND1-220ENST00000508902 TARBP1Q13395 1621 aaKnown RBP32.34■■■□□ 2.77
CLDND1-220ENST00000508902 FGD5Q6ZNL6 1462 aa32.25■■■□□ 2.75
CLDND1-220ENST00000508902 RAD54L2Q9Y4B4 1467 aa32.23■■■□□ 2.75
CLDND1-220ENST00000508902 EIF4G3O43432 1585 aaKnown RBP32.21■■■□□ 2.75
CLDND1-220ENST00000508902 SYNJ1O43426 1573 aa32.14■■■□□ 2.74
CLDND1-220ENST00000508902 WDR97A6NE52 1622 aa32.11■■■□□ 2.73
CLDND1-220ENST00000508902 SOGA1O94964 1423 aa32.11■■■□□ 2.73
CLDND1-220ENST00000508902 BIVM-ERCC5R4GMW8 1640 aa32.11■■■□□ 2.73
CLDND1-220ENST00000508902 AQRO60306 1485 aaKnown RBP eCLIP32.09■■■□□ 2.731e-6■■■■□ 26.1
CLDND1-220ENST00000508902 TOP2BQ02880 1626 aa32.07■■■□□ 2.72
CLDND1-220ENST00000508902 WRNQ14191 1432 aaPredicted RBP eCLIP32.06■■■□□ 2.72
CLDND1-220ENST00000508902 TDRD9Q8NDG6 1382 aaKnown RBP31.99■■■□□ 2.71
CLDND1-220ENST00000508902 ABCA10Q8WWZ4 1543 aa31.92■■■□□ 2.7
CLDND1-220ENST00000508902 ABCA5Q8WWZ7 1642 aa31.89■■■□□ 2.7
CLDND1-220ENST00000508902 CHD1O14646 1710 aa31.85■■■□□ 2.69
CLDND1-220ENST00000508902 PBRM1Q86U86 1689 aa31.83■■■□□ 2.69
CLDND1-220ENST00000508902 SNAPC4Q5SXM2 1469 aa31.8■■■□□ 2.68
CLDND1-220ENST00000508902 GAPVD1Q14C86 1478 aa31.78■■■□□ 2.68
CLDND1-220ENST00000508902 GRIN2BQ13224 1484 aa31.77■■■□□ 2.68
CLDND1-220ENST00000508902 OSCARQ8IYS5 282 aa31.72■■■□□ 2.67
CLDND1-220ENST00000508902 MAGI1Q96QZ7 1491 aaPredicted RBP31.69■■■□□ 2.66
CLDND1-220ENST00000508902 SYNJ2O15056 1496 aa31.58■■■□□ 2.65
CLDND1-220ENST00000508902 ADAMTS12P58397 1594 aa31.57■■■□□ 2.64
CLDND1-220ENST00000508902 FBLN2P98095 1184 aa31.54■■■□□ 2.64
CLDND1-220ENST00000508902 ERICH3Q5RHP9 1530 aa31.5■■■□□ 2.63
CLDND1-220ENST00000508902 CLASP1Q7Z460 1538 aa31.49■■■□□ 2.63
CLDND1-220ENST00000508902 RIMBP3CA6NJZ7 1639 aa31.46■■■□□ 2.63
CLDND1-220ENST00000508902 RIMBP3BA6NNM3 1639 aa31.46■■■□□ 2.63
CLDND1-220ENST00000508902 RIMBP3Q9UFD9 1639 aa31.46■■■□□ 2.63
CLDND1-220ENST00000508902 CHMP7Q8WUX9 453 aaPredicted RBP31.43■■■□□ 2.62
CLDND1-220ENST00000508902 GRIN2AQ12879 1464 aa31.4■■■□□ 2.62
CLDND1-220ENST00000508902 ARHGEF11O15085 1522 aa31.4■■■□□ 2.62
CLDND1-220ENST00000508902 FHAD1B1AJZ9 1412 aa31.38■■■□□ 2.61
CLDND1-220ENST00000508902 CEP170Q5SW79 1584 aa31.34■■■□□ 2.61
CLDND1-220ENST00000508902 KIF27Q86VH2 1401 aa31.33■■■□□ 2.61
CLDND1-220ENST00000508902 NUP160Q12769 1436 aa31.3■■■□□ 2.6
CLDND1-220ENST00000508902 IGF1RP08069 1367 aa31.3■■■□□ 2.6
CLDND1-220ENST00000508902 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
CLDND1-220ENST00000508902 CUL7Q14999 1698 aa31.22■■■□□ 2.59
CLDND1-220ENST00000508902 ARAP1Q96P48 1450 aa31.19■■■□□ 2.58
CLDND1-220ENST00000508902 TRIM41Q8WV44 630 aa31.13■■■□□ 2.57
CLDND1-220ENST00000508902 ERCC6L2Q5T890 1561 aa31.13■■■□□ 2.57
CLDND1-220ENST00000508902 SHROOM2Q13796 1616 aa31.13■■■□□ 2.57
CLDND1-220ENST00000508902 CARMIL1Q5VZK9 1371 aa31.05■■■□□ 2.56
CLDND1-220ENST00000508902 CYB5RLQ6IPT4 315 aa30.97■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms