RNA–Protein interactions for RNA: ENST00000508659.5

CLDND1-219, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 681 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-219ENST00000508659 NISCHQ9Y2I1 1504 aa41.32■■■■■ 4.2
CLDND1-219ENST00000508659 CCDC180Q9P1Z9 1646 aa36.81■■■■□ 3.48
CLDND1-219ENST00000508659 ABCC9O60706 1549 aa36.08■■■■□ 3.37
CLDND1-219ENST00000508659 RB1CC1Q8TDY2 1594 aa34.69■■■■□ 3.14
CLDND1-219ENST00000508659 NACADO15069 1562 aa34.62■■■■□ 3.13
CLDND1-219ENST00000508659 DCAF8L2P0C7V8 631 aa34.51■■■■□ 3.12
CLDND1-219ENST00000508659 ZCCHC6Q5VYS8 1495 aaKnown RBP34.45■■■■□ 3.1
CLDND1-219ENST00000508659 MYO15BQ96JP2 1530 aa34.38■■■■□ 3.09
CLDND1-219ENST00000508659 DCAF1Q9Y4B6 1507 aa34.2■■■■□ 3.06
CLDND1-219ENST00000508659 UNC13AQ9UPW8 1703 aa33.82■■■■□ 3
CLDND1-219ENST00000508659 PABPN1Q86U42 306 aaKnown RBP eCLIP33.65■■■□□ 2.98
CLDND1-219ENST00000508659 SCRIBQ14160 1630 aa33.6■■■□□ 2.97
CLDND1-219ENST00000508659 BICRAQ9NZM4 1560 aa33.59■■■□□ 2.97
CLDND1-219ENST00000508659 SHROOM4Q9ULL8 1493 aa33.33■■■□□ 2.93
CLDND1-219ENST00000508659 DNAJC5BQ9UF47 199 aa33.06■■■□□ 2.88
CLDND1-219ENST00000508659 EIF4G1Q04637 1599 aaKnown RBP32.76■■■□□ 2.84
CLDND1-219ENST00000508659 CC2D2AQ9P2K1 1620 aa32.62■■■□□ 2.81
CLDND1-219ENST00000508659 CECR2Q9BXF3 1484 aa32.44■■■□□ 2.78
CLDND1-219ENST00000508659 SMARCA4P51532 1647 aa32.11■■■□□ 2.73
CLDND1-219ENST00000508659 BAZ1AQ9NRL2 1556 aaPredicted RBP32.07■■■□□ 2.72
CLDND1-219ENST00000508659 SMARCA2P51531 1590 aa31.93■■■□□ 2.7
CLDND1-219ENST00000508659 ATAD2BQ9ULI0 1458 aa31.92■■■□□ 2.7
CLDND1-219ENST00000508659 NCAPD3P42695 1498 aa31.91■■■□□ 2.7
CLDND1-219ENST00000508659 MROH2BQ7Z745 1585 aa31.83■■■□□ 2.69
CLDND1-219ENST00000508659 HMGXB3Q12766 1538 aa31.81■■■□□ 2.68
CLDND1-219ENST00000508659 PEG3Q9GZU2 1588 aa31.78■■■□□ 2.68
CLDND1-219ENST00000508659 BAZ1BQ9UIG0 1483 aaKnown RBP31.72■■■□□ 2.67
CLDND1-219ENST00000508659 WIZO95785 1651 aa31.48■■■□□ 2.63
CLDND1-219ENST00000508659 RSF1Q96T23 1441 aaPredicted RBP31.43■■■□□ 2.62
CLDND1-219ENST00000508659 TOP2AP11388 1531 aaKnown RBP31.2■■■□□ 2.59
CLDND1-219ENST00000508659 NESP48681 1621 aa31.17■■■□□ 2.58
CLDND1-219ENST00000508659 ERCC6Q03468 1493 aa31.16■■■□□ 2.58
CLDND1-219ENST00000508659 LAMC3Q9Y6N6 1575 aa31.13■■■□□ 2.57
CLDND1-219ENST00000508659 CADPSQ9ULU8 1353 aa30.98■■■□□ 2.55
CLDND1-219ENST00000508659 PDS5BQ9NTI5 1447 aa30.91■■■□□ 2.54
CLDND1-219ENST00000508659 CUX2O14529 1486 aa30.84■■■□□ 2.53
CLDND1-219ENST00000508659 KIF21AQ7Z4S6 1674 aa30.82■■■□□ 2.52
CLDND1-219ENST00000508659 CFTRP13569 1480 aa30.8■■■□□ 2.52
CLDND1-219ENST00000508659 THOC2Q8NI27 1593 aaKnown RBP30.77■■■□□ 2.52
CLDND1-219ENST00000508659 CCDC88BA6NC98 1476 aa30.76■■■□□ 2.52
CLDND1-219ENST00000508659 FANCD2Q9BXW9 1451 aa30.66■■■□□ 2.5
CLDND1-219ENST00000508659 CEP164Q9UPV0 1460 aa30.66■■■□□ 2.5
CLDND1-219ENST00000508659 MRC2Q9UBG0 1479 aa30.63■■■□□ 2.49
CLDND1-219ENST00000508659 SUPT5HO00267 1087 aaKnown RBP30.55■■■□□ 2.48
CLDND1-219ENST00000508659 PRDM2Q13029 1718 aa30.55■■■□□ 2.48
CLDND1-219ENST00000508659 WDR62O43379 1518 aa30.52■■■□□ 2.48
CLDND1-219ENST00000508659 URB2Q14146 1524 aaKnown RBP30.33■■■□□ 2.45
CLDND1-219ENST00000508659 TOPBP1Q92547 1522 aa30.15■■■□□ 2.42
CLDND1-219ENST00000508659 ABCC8Q09428 1581 aa30.14■■■□□ 2.42
CLDND1-219ENST00000508659 DNMBPQ6XZF7 1577 aa30.13■■■□□ 2.41
CLDND1-219ENST00000508659 IFT140Q96RY7 1462 aa30■■■□□ 2.39
CLDND1-219ENST00000508659 POLA1P09884 1462 aaPredicted RBP29.9■■■□□ 2.38
CLDND1-219ENST00000508659 CUX1P39880 1505 aa29.88■■■□□ 2.37
CLDND1-219ENST00000508659 DNAJC5Q9H3Z4 198 aa29.88■■■□□ 2.37
CLDND1-219ENST00000508659 ZNF608Q9ULD9 1512 aaPredicted RBP29.84■■■□□ 2.37
CLDND1-219ENST00000508659 FGD5Q6ZNL6 1462 aa29.82■■■□□ 2.36
CLDND1-219ENST00000508659 TARBP1Q13395 1621 aaKnown RBP29.81■■■□□ 2.36
CLDND1-219ENST00000508659 EIF4G3O43432 1585 aaKnown RBP29.77■■■□□ 2.36
CLDND1-219ENST00000508659 RAD54L2Q9Y4B4 1467 aa29.74■■■□□ 2.35
CLDND1-219ENST00000508659 SOGA1O94964 1423 aa29.73■■■□□ 2.35
CLDND1-219ENST00000508659 WRNQ14191 1432 aaPredicted RBP eCLIP29.69■■■□□ 2.34
CLDND1-219ENST00000508659 AQRO60306 1485 aaKnown RBP eCLIP29.64■■■□□ 2.34
CLDND1-219ENST00000508659 WDR97A6NE52 1622 aa29.63■■■□□ 2.33
CLDND1-219ENST00000508659 TOP2BQ02880 1626 aa29.62■■■□□ 2.33
CLDND1-219ENST00000508659 SYNJ1O43426 1573 aa29.61■■■□□ 2.33
CLDND1-219ENST00000508659 BIVM-ERCC5R4GMW8 1640 aa29.61■■■□□ 2.33
CLDND1-219ENST00000508659 TDRD9Q8NDG6 1382 aaKnown RBP29.58■■■□□ 2.33
CLDND1-219ENST00000508659 ABCA10Q8WWZ4 1543 aa29.52■■■□□ 2.32
CLDND1-219ENST00000508659 OSCARQ8IYS5 282 aa29.46■■■□□ 2.31
CLDND1-219ENST00000508659 GRIN2BQ13224 1484 aa29.44■■■□□ 2.3
CLDND1-219ENST00000508659 SNAPC4Q5SXM2 1469 aa29.43■■■□□ 2.3
CLDND1-219ENST00000508659 GAPVD1Q14C86 1478 aa29.42■■■□□ 2.3
CLDND1-219ENST00000508659 ABCA5Q8WWZ7 1642 aa29.42■■■□□ 2.3
CLDND1-219ENST00000508659 MAGI1Q96QZ7 1491 aaPredicted RBP29.39■■■□□ 2.3
CLDND1-219ENST00000508659 PBRM1Q86U86 1689 aa29.37■■■□□ 2.29
CLDND1-219ENST00000508659 CHD1O14646 1710 aa29.37■■■□□ 2.29
CLDND1-219ENST00000508659 FBLN2P98095 1184 aa29.32■■■□□ 2.28
CLDND1-219ENST00000508659 SYNJ2O15056 1496 aa29.27■■■□□ 2.28
CLDND1-219ENST00000508659 CHMP7Q8WUX9 453 aaPredicted RBP29.22■■■□□ 2.27
CLDND1-219ENST00000508659 ADAMTS12P58397 1594 aa29.18■■■□□ 2.26
CLDND1-219ENST00000508659 ERICH3Q5RHP9 1530 aa29.17■■■□□ 2.26
CLDND1-219ENST00000508659 FHAD1B1AJZ9 1412 aa29.09■■■□□ 2.25
CLDND1-219ENST00000508659 GRIN2AQ12879 1464 aa29.07■■■□□ 2.24
CLDND1-219ENST00000508659 CLASP1Q7Z460 1538 aa29.07■■■□□ 2.24
CLDND1-219ENST00000508659 KIF27Q86VH2 1401 aa29.07■■■□□ 2.24
CLDND1-219ENST00000508659 ARHGEF11O15085 1522 aa29.06■■■□□ 2.24
CLDND1-219ENST00000508659 RIMBP3CA6NJZ7 1639 aa29.05■■■□□ 2.24
CLDND1-219ENST00000508659 RIMBP3BA6NNM3 1639 aa29.05■■■□□ 2.24
CLDND1-219ENST00000508659 RIMBP3Q9UFD9 1639 aa29.05■■■□□ 2.24
CLDND1-219ENST00000508659 TRIM41Q8WV44 630 aa28.93■■■□□ 2.22
CLDND1-219ENST00000508659 NUP160Q12769 1436 aa28.93■■■□□ 2.22
CLDND1-219ENST00000508659 CEP170Q5SW79 1584 aa28.92■■■□□ 2.22
CLDND1-219ENST00000508659 CUL7Q14999 1698 aa28.91■■■□□ 2.22
CLDND1-219ENST00000508659 IGF1RP08069 1367 aa28.88■■■□□ 2.21
CLDND1-219ENST00000508659 ARAP1Q96P48 1450 aa28.82■■■□□ 2.2
CLDND1-219ENST00000508659 RUSC2Q8N2Y8 1516 aa28.75■■■□□ 2.19
CLDND1-219ENST00000508659 CARMIL1Q5VZK9 1371 aa28.75■■■□□ 2.19
CLDND1-219ENST00000508659 CYB5RLQ6IPT4 315 aa28.72■■■□□ 2.19
CLDND1-219ENST00000508659 SHROOM2Q13796 1616 aa28.71■■■□□ 2.19
CLDND1-219ENST00000508659 ERCC6L2Q5T890 1561 aa28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms