RNA–Protein interactions for RNA: ENST00000508473.5

SRPK1-210, Transcript of SRSF protein kinase 1, humanhuman

TSL 2

Gene SRPK1, Length 858 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRPK1-210ENST00000508473 NISCHQ9Y2I1 1504 aa58.95■■■■■ 7.03
SRPK1-210ENST00000508473 CCDC180Q9P1Z9 1646 aa52.41■■■■■ 5.98
SRPK1-210ENST00000508473 ABCC9O60706 1549 aa51.77■■■■■ 5.88
SRPK1-210ENST00000508473 DCAF8L2P0C7V8 631 aa49.59■■■■■ 5.53
SRPK1-210ENST00000508473 RB1CC1Q8TDY2 1594 aa49.54■■■■■ 5.52
SRPK1-210ENST00000508473 NACADO15069 1562 aa49.41■■■■■ 5.5
SRPK1-210ENST00000508473 ZCCHC6Q5VYS8 1495 aaKnown RBP49.04■■■■■ 5.44
SRPK1-210ENST00000508473 MYO15BQ96JP2 1530 aa48.96■■■■■ 5.43
SRPK1-210ENST00000508473 DCAF1Q9Y4B6 1507 aa48.68■■■■■ 5.38
SRPK1-210ENST00000508473 PABPN1Q86U42 306 aaKnown RBP eCLIP48.41■■■■■ 5.34
SRPK1-210ENST00000508473 UNC13AQ9UPW8 1703 aa48.38■■■■■ 5.33
SRPK1-210ENST00000508473 BICRAQ9NZM4 1560 aa48.08■■■■■ 5.29
SRPK1-210ENST00000508473 SCRIBQ14160 1630 aa47.96■■■■■ 5.27
SRPK1-210ENST00000508473 DNAJC5BQ9UF47 199 aa47.82■■■■■ 5.25
SRPK1-210ENST00000508473 SHROOM4Q9ULL8 1493 aa47.44■■■■■ 5.18
SRPK1-210ENST00000508473 EIF4G1Q04637 1599 aaKnown RBP46.84■■■■■ 5.09
SRPK1-210ENST00000508473 CC2D2AQ9P2K1 1620 aa46.73■■■■■ 5.07
SRPK1-210ENST00000508473 CECR2Q9BXF3 1484 aa46.51■■■■■ 5.04
SRPK1-210ENST00000508473 SMARCA4P51532 1647 aa45.78■■■■■ 4.92
SRPK1-210ENST00000508473 BAZ1AQ9NRL2 1556 aaPredicted RBP45.68■■■■■ 4.9
SRPK1-210ENST00000508473 ATAD2BQ9ULI0 1458 aa45.66■■■■■ 4.9
SRPK1-210ENST00000508473 NCAPD3P42695 1498 aa45.63■■■■■ 4.9
SRPK1-210ENST00000508473 SMARCA2P51531 1590 aa45.52■■■■■ 4.88
SRPK1-210ENST00000508473 MROH2BQ7Z745 1585 aa45.48■■■■■ 4.87
SRPK1-210ENST00000508473 HMGXB3Q12766 1538 aa45.33■■■■■ 4.85
SRPK1-210ENST00000508473 PEG3Q9GZU2 1588 aa45.28■■■■■ 4.84
SRPK1-210ENST00000508473 BAZ1BQ9UIG0 1483 aaKnown RBP45.26■■■■■ 4.84
SRPK1-210ENST00000508473 WIZO95785 1651 aa44.96■■■■■ 4.79
SRPK1-210ENST00000508473 RSF1Q96T23 1441 aaPredicted RBP44.86■■■■■ 4.77
SRPK1-210ENST00000508473 NESP48681 1621 aa44.72■■■■■ 4.75
SRPK1-210ENST00000508473 ERCC6Q03468 1493 aa44.62■■■■■ 4.73
SRPK1-210ENST00000508473 TOP2AP11388 1531 aaKnown RBP44.43■■■■■ 4.7
SRPK1-210ENST00000508473 LAMC3Q9Y6N6 1575 aa44.43■■■■■ 4.7
SRPK1-210ENST00000508473 CADPSQ9ULU8 1353 aa44.33■■■■■ 4.69
SRPK1-210ENST00000508473 PDS5BQ9NTI5 1447 aa44.21■■■■■ 4.67
SRPK1-210ENST00000508473 CUX2O14529 1486 aa44.15■■■■■ 4.66
SRPK1-210ENST00000508473 KIF21AQ7Z4S6 1674 aa44.07■■■■■ 4.65
SRPK1-210ENST00000508473 THOC2Q8NI27 1593 aaKnown RBP43.98■■■■■ 4.63
SRPK1-210ENST00000508473 CFTRP13569 1480 aa43.98■■■■■ 4.63
SRPK1-210ENST00000508473 CCDC88BA6NC98 1476 aa43.96■■■■■ 4.63
SRPK1-210ENST00000508473 FANCD2Q9BXW9 1451 aa43.83■■■■■ 4.61
SRPK1-210ENST00000508473 CEP164Q9UPV0 1460 aa43.78■■■■■ 4.6
SRPK1-210ENST00000508473 MRC2Q9UBG0 1479 aa43.77■■■■■ 4.6
SRPK1-210ENST00000508473 SUPT5HO00267 1087 aaKnown RBP43.67■■■■■ 4.58
SRPK1-210ENST00000508473 WDR62O43379 1518 aa43.6■■■■■ 4.57
SRPK1-210ENST00000508473 PRDM2Q13029 1718 aa43.48■■■■■ 4.55
SRPK1-210ENST00000508473 URB2Q14146 1524 aaKnown RBP43.41■■■■■ 4.54
SRPK1-210ENST00000508473 DNAJC5Q9H3Z4 198 aa43.31■■■■■ 4.52
SRPK1-210ENST00000508473 TOPBP1Q92547 1522 aa43.08■■■■■ 4.49
SRPK1-210ENST00000508473 ABCC8Q09428 1581 aa42.99■■■■■ 4.47
SRPK1-210ENST00000508473 DNMBPQ6XZF7 1577 aa42.97■■■■■ 4.47
SRPK1-210ENST00000508473 IFT140Q96RY7 1462 aa42.87■■■■■ 4.45
SRPK1-210ENST00000508473 ZNF608Q9ULD9 1512 aaPredicted RBP42.76■■■■■ 4.44
SRPK1-210ENST00000508473 POLA1P09884 1462 aaPredicted RBP42.7■■■■■ 4.43
SRPK1-210ENST00000508473 CUX1P39880 1505 aa42.66■■■■■ 4.42
SRPK1-210ENST00000508473 RAD54L2Q9Y4B4 1467 aa42.59■■■■■ 4.41
SRPK1-210ENST00000508473 TARBP1Q13395 1621 aaKnown RBP42.59■■■■■ 4.41
SRPK1-210ENST00000508473 FGD5Q6ZNL6 1462 aa42.58■■■■■ 4.41
SRPK1-210ENST00000508473 SOGA1O94964 1423 aa42.56■■■■■ 4.4
SRPK1-210ENST00000508473 AQRO60306 1485 aaKnown RBP eCLIP42.5■■■■■ 4.393e-8■■□□□ 14
SRPK1-210ENST00000508473 EIF4G3O43432 1585 aaKnown RBP42.49■■■■■ 4.39
SRPK1-210ENST00000508473 TDRD9Q8NDG6 1382 aaKnown RBP42.4■■■■■ 4.38
SRPK1-210ENST00000508473 OSCARQ8IYS5 282 aa42.38■■■■■ 4.37
SRPK1-210ENST00000508473 WRNQ14191 1432 aaPredicted RBP eCLIP42.3■■■■■ 4.36
SRPK1-210ENST00000508473 SYNJ1O43426 1573 aa42.19■■■■■ 4.34
SRPK1-210ENST00000508473 TOP2BQ02880 1626 aa42.17■■■■■ 4.34
SRPK1-210ENST00000508473 WDR97A6NE52 1622 aa42.14■■■■■ 4.34
SRPK1-210ENST00000508473 BIVM-ERCC5R4GMW8 1640 aa42.14■■■■■ 4.34
SRPK1-210ENST00000508473 FBLN2P98095 1184 aa42.12■■■■■ 4.33
SRPK1-210ENST00000508473 ABCA10Q8WWZ4 1543 aa42.1■■■■■ 4.33
SRPK1-210ENST00000508473 SNAPC4Q5SXM2 1469 aa42.07■■■■■ 4.33
SRPK1-210ENST00000508473 GRIN2BQ13224 1484 aa42.05■■■■■ 4.32
SRPK1-210ENST00000508473 GAPVD1Q14C86 1478 aa42.04■■■■■ 4.32
SRPK1-210ENST00000508473 CHD1O14646 1710 aa42■■■■■ 4.31
SRPK1-210ENST00000508473 MAGI1Q96QZ7 1491 aaPredicted RBP41.93■■■■■ 4.3
SRPK1-210ENST00000508473 ABCA5Q8WWZ7 1642 aa41.93■■■■■ 4.3
SRPK1-210ENST00000508473 CHMP7Q8WUX9 453 aaPredicted RBP41.9■■■■■ 4.3
SRPK1-210ENST00000508473 PBRM1Q86U86 1689 aa41.88■■■■■ 4.29
SRPK1-210ENST00000508473 SYNJ2O15056 1496 aa41.8■■■■■ 4.28
SRPK1-210ENST00000508473 TRIM41Q8WV44 630 aa41.8■■■■■ 4.28
SRPK1-210ENST00000508473 RIMBP3CA6NJZ7 1639 aa41.66■■■■■ 4.26
SRPK1-210ENST00000508473 RIMBP3BA6NNM3 1639 aa41.66■■■■■ 4.26
SRPK1-210ENST00000508473 RIMBP3Q9UFD9 1639 aa41.66■■■■■ 4.26
SRPK1-210ENST00000508473 ARHGEF11O15085 1522 aa41.64■■■■■ 4.26
SRPK1-210ENST00000508473 ADAMTS12P58397 1594 aa41.58■■■■■ 4.25
SRPK1-210ENST00000508473 ERICH3Q5RHP9 1530 aa41.57■■■■■ 4.25
SRPK1-210ENST00000508473 CLASP1Q7Z460 1538 aa41.55■■■■■ 4.24
SRPK1-210ENST00000508473 FHAD1B1AJZ9 1412 aa41.53■■■■■ 4.24
SRPK1-210ENST00000508473 GRIN2AQ12879 1464 aa41.51■■■■■ 4.24
SRPK1-210ENST00000508473 KIF27Q86VH2 1401 aa41.44■■■■■ 4.22
SRPK1-210ENST00000508473 CYB5RLQ6IPT4 315 aa41.39■■■■■ 4.22
SRPK1-210ENST00000508473 IGF1RP08069 1367 aa41.34■■■■■ 4.21
SRPK1-210ENST00000508473 NUP160Q12769 1436 aa41.33■■■■■ 4.21
SRPK1-210ENST00000508473 CEP170Q5SW79 1584 aa41.32■■■■■ 4.2
SRPK1-210ENST00000508473 ARAP1Q96P48 1450 aa41.31■■■■■ 4.2
SRPK1-210ENST00000508473 CUL7Q14999 1698 aa41.11■■■■■ 4.17
SRPK1-210ENST00000508473 CARMIL1Q5VZK9 1371 aa41.09■■■■■ 4.17
SRPK1-210ENST00000508473 RUSC2Q8N2Y8 1516 aa41.05■■■■■ 4.16
SRPK1-210ENST00000508473 ERCC6L2Q5T890 1561 aa41.03■■■■■ 4.16
SRPK1-210ENST00000508473 SHROOM2Q13796 1616 aa40.98■■■■■ 4.15
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms