RNA–Protein interactions for RNA: ENST00000508343.1

TRIO-211, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

TSL 2

Gene TRIO, Length 776 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-211ENST00000508343 NISCHQ9Y2I1 1504 aa36.65■■■■□ 3.46
TRIO-211ENST00000508343 CCDC180Q9P1Z9 1646 aa32.57■■■□□ 2.8
TRIO-211ENST00000508343 ABCC9O60706 1549 aa32.03■■■□□ 2.72
TRIO-211ENST00000508343 DCAF8L2P0C7V8 631 aa30.76■■■□□ 2.51
TRIO-211ENST00000508343 RB1CC1Q8TDY2 1594 aa30.75■■■□□ 2.51
TRIO-211ENST00000508343 NACADO15069 1562 aa30.71■■■□□ 2.51
TRIO-211ENST00000508343 MYO15BQ96JP2 1530 aa30.49■■■□□ 2.47
TRIO-211ENST00000508343 ZCCHC6Q5VYS8 1495 aaKnown RBP30.48■■■□□ 2.47
TRIO-211ENST00000508343 DCAF1Q9Y4B6 1507 aa30.32■■■□□ 2.44
TRIO-211ENST00000508343 UNC13AQ9UPW8 1703 aa29.99■■■□□ 2.39
TRIO-211ENST00000508343 PABPN1Q86U42 306 aaKnown RBP eCLIP29.98■■■□□ 2.39
TRIO-211ENST00000508343 BICRAQ9NZM4 1560 aa29.81■■■□□ 2.36
TRIO-211ENST00000508343 SCRIBQ14160 1630 aa29.73■■■□□ 2.35
TRIO-211ENST00000508343 DNAJC5BQ9UF47 199 aa29.56■■■□□ 2.32
TRIO-211ENST00000508343 SHROOM4Q9ULL8 1493 aa29.5■■■□□ 2.31
TRIO-211ENST00000508343 EIF4G1Q04637 1599 aaKnown RBP29.04■■■□□ 2.24
TRIO-211ENST00000508343 CC2D2AQ9P2K1 1620 aa28.94■■■□□ 2.22
TRIO-211ENST00000508343 CECR2Q9BXF3 1484 aa28.8■■■□□ 2.2
TRIO-211ENST00000508343 SMARCA4P51532 1647 aa28.43■■■□□ 2.14
TRIO-211ENST00000508343 BAZ1AQ9NRL2 1556 aaPredicted RBP28.41■■■□□ 2.14
TRIO-211ENST00000508343 NCAPD3P42695 1498 aa28.36■■■□□ 2.13
TRIO-211ENST00000508343 ATAD2BQ9ULI0 1458 aa28.34■■■□□ 2.13
TRIO-211ENST00000508343 SMARCA2P51531 1590 aa28.28■■■□□ 2.12
TRIO-211ENST00000508343 MROH2BQ7Z745 1585 aa28.24■■■□□ 2.11
TRIO-211ENST00000508343 PEG3Q9GZU2 1588 aa28.16■■■□□ 2.1
TRIO-211ENST00000508343 HMGXB3Q12766 1538 aa28.16■■■□□ 2.1
TRIO-211ENST00000508343 BAZ1BQ9UIG0 1483 aaKnown RBP28.09■■■□□ 2.09
TRIO-211ENST00000508343 RSF1Q96T23 1441 aaPredicted RBP27.91■■■□□ 2.06
TRIO-211ENST00000508343 WIZO95785 1651 aa27.91■■■□□ 2.06
TRIO-211ENST00000508343 NESP48681 1621 aa27.68■■■□□ 2.02
TRIO-211ENST00000508343 ERCC6Q03468 1493 aa27.63■■■□□ 2.01
TRIO-211ENST00000508343 TOP2AP11388 1531 aaKnown RBP27.61■■■□□ 2.01
TRIO-211ENST00000508343 LAMC3Q9Y6N6 1575 aa27.59■■■□□ 2.01
TRIO-211ENST00000508343 CADPSQ9ULU8 1353 aa27.55■■■□□ 2
TRIO-211ENST00000508343 PDS5BQ9NTI5 1447 aa27.46■■□□□ 1.99
TRIO-211ENST00000508343 CUX2O14529 1486 aa27.37■■□□□ 1.97
TRIO-211ENST00000508343 CCDC88BA6NC98 1476 aa27.33■■□□□ 1.97
TRIO-211ENST00000508343 CFTRP13569 1480 aa27.33■■□□□ 1.97
TRIO-211ENST00000508343 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
TRIO-211ENST00000508343 THOC2Q8NI27 1593 aaKnown RBP27.23■■□□□ 1.95
TRIO-211ENST00000508343 FANCD2Q9BXW9 1451 aa27.19■■□□□ 1.94
TRIO-211ENST00000508343 SUPT5HO00267 1087 aaKnown RBP27.17■■□□□ 1.94
TRIO-211ENST00000508343 CEP164Q9UPV0 1460 aa27.16■■□□□ 1.94
TRIO-211ENST00000508343 MRC2Q9UBG0 1479 aa27.14■■□□□ 1.94
TRIO-211ENST00000508343 WDR62O43379 1518 aa27.04■■□□□ 1.92
TRIO-211ENST00000508343 PRDM2Q13029 1718 aa27.02■■□□□ 1.92
TRIO-211ENST00000508343 URB2Q14146 1524 aaKnown RBP26.91■■□□□ 1.9
TRIO-211ENST00000508343 ABCC8Q09428 1581 aa26.76■■□□□ 1.87
TRIO-211ENST00000508343 TOPBP1Q92547 1522 aa26.74■■□□□ 1.87
TRIO-211ENST00000508343 DNAJC5Q9H3Z4 198 aa26.73■■□□□ 1.87
TRIO-211ENST00000508343 DNMBPQ6XZF7 1577 aa26.68■■□□□ 1.86
TRIO-211ENST00000508343 IFT140Q96RY7 1462 aa26.62■■□□□ 1.85
TRIO-211ENST00000508343 POLA1P09884 1462 aaPredicted RBP26.5■■□□□ 1.83
TRIO-211ENST00000508343 ZNF608Q9ULD9 1512 aaPredicted RBP26.49■■□□□ 1.83
TRIO-211ENST00000508343 CUX1P39880 1505 aa26.49■■□□□ 1.83
TRIO-211ENST00000508343 SOGA1O94964 1423 aa26.44■■□□□ 1.82
TRIO-211ENST00000508343 TARBP1Q13395 1621 aaKnown RBP26.43■■□□□ 1.82
TRIO-211ENST00000508343 FGD5Q6ZNL6 1462 aa26.42■■□□□ 1.82
TRIO-211ENST00000508343 RAD54L2Q9Y4B4 1467 aa26.41■■□□□ 1.82
TRIO-211ENST00000508343 AQRO60306 1485 aaKnown RBP eCLIP26.36■■□□□ 1.81
TRIO-211ENST00000508343 EIF4G3O43432 1585 aaKnown RBP26.33■■□□□ 1.81
TRIO-211ENST00000508343 WRNQ14191 1432 aaPredicted RBP eCLIP26.31■■□□□ 1.8
TRIO-211ENST00000508343 TDRD9Q8NDG6 1382 aaKnown RBP26.31■■□□□ 1.8
TRIO-211ENST00000508343 OSCARQ8IYS5 282 aa26.3■■□□□ 1.8
TRIO-211ENST00000508343 TOP2BQ02880 1626 aa26.23■■□□□ 1.79
TRIO-211ENST00000508343 WDR97A6NE52 1622 aa26.21■■□□□ 1.79
TRIO-211ENST00000508343 SYNJ1O43426 1573 aa26.2■■□□□ 1.79
TRIO-211ENST00000508343 BIVM-ERCC5R4GMW8 1640 aa26.2■■□□□ 1.78
TRIO-211ENST00000508343 ABCA10Q8WWZ4 1543 aa26.17■■□□□ 1.78
TRIO-211ENST00000508343 GRIN2BQ13224 1484 aa26.11■■□□□ 1.77
TRIO-211ENST00000508343 GAPVD1Q14C86 1478 aa26.11■■□□□ 1.77
TRIO-211ENST00000508343 FBLN2P98095 1184 aa26.1■■□□□ 1.77
TRIO-211ENST00000508343 SNAPC4Q5SXM2 1469 aa26.07■■□□□ 1.76
TRIO-211ENST00000508343 MAGI1Q96QZ7 1491 aaPredicted RBP26.04■■□□□ 1.76
TRIO-211ENST00000508343 ABCA5Q8WWZ7 1642 aa26.03■■□□□ 1.76
TRIO-211ENST00000508343 CHMP7Q8WUX9 453 aaPredicted RBP26.02■■□□□ 1.76
TRIO-211ENST00000508343 CHD1O14646 1710 aa26.01■■□□□ 1.75
TRIO-211ENST00000508343 PBRM1Q86U86 1689 aa25.98■■□□□ 1.75
TRIO-211ENST00000508343 SYNJ2O15056 1496 aa25.96■■□□□ 1.75
TRIO-211ENST00000508343 ERICH3Q5RHP9 1530 aa25.85■■□□□ 1.73
TRIO-211ENST00000508343 FHAD1B1AJZ9 1412 aa25.81■■□□□ 1.72
TRIO-211ENST00000508343 TRIM41Q8WV44 630 aa25.79■■□□□ 1.72
TRIO-211ENST00000508343 KIF27Q86VH2 1401 aa25.79■■□□□ 1.72
TRIO-211ENST00000508343 ADAMTS12P58397 1594 aa25.78■■□□□ 1.72
TRIO-211ENST00000508343 ARHGEF11O15085 1522 aa25.78■■□□□ 1.72
TRIO-211ENST00000508343 RIMBP3CA6NJZ7 1639 aa25.77■■□□□ 1.72
TRIO-211ENST00000508343 RIMBP3BA6NNM3 1639 aa25.77■■□□□ 1.72
TRIO-211ENST00000508343 RIMBP3Q9UFD9 1639 aa25.77■■□□□ 1.72
TRIO-211ENST00000508343 GRIN2AQ12879 1464 aa25.76■■□□□ 1.71
TRIO-211ENST00000508343 CLASP1Q7Z460 1538 aa25.76■■□□□ 1.71
TRIO-211ENST00000508343 IGF1RP08069 1367 aa25.72■■□□□ 1.71
TRIO-211ENST00000508343 NUP160Q12769 1436 aa25.66■■□□□ 1.7
TRIO-211ENST00000508343 CYB5RLQ6IPT4 315 aa25.63■■□□□ 1.69
TRIO-211ENST00000508343 CEP170Q5SW79 1584 aa25.61■■□□□ 1.69
TRIO-211ENST00000508343 CUL7Q14999 1698 aa25.57■■□□□ 1.68
TRIO-211ENST00000508343 ARAP1Q96P48 1450 aa25.56■■□□□ 1.68
TRIO-211ENST00000508343 CARMIL1Q5VZK9 1371 aa25.56■■□□□ 1.68
TRIO-211ENST00000508343 RUSC2Q8N2Y8 1516 aa25.5■■□□□ 1.67
TRIO-211ENST00000508343 JPH4Q96JJ6 628 aa25.47■■□□□ 1.67
TRIO-211ENST00000508343 SHROOM2Q13796 1616 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 236.3 ms