RNA–Protein interactions for RNA: ENST00000507944.5

CLDND1-216, Transcript of claudin domain containing 1, humanhuman

TSL 4

Gene CLDND1, Length 903 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-216ENST00000507944 NISCHQ9Y2I1 1504 aa51.69■■■■■ 5.87
CLDND1-216ENST00000507944 CCDC180Q9P1Z9 1646 aa46.22■■■■■ 4.99
CLDND1-216ENST00000507944 ABCC9O60706 1549 aa46.03■■■■■ 4.96
CLDND1-216ENST00000507944 RB1CC1Q8TDY2 1594 aa43.91■■■■■ 4.62
CLDND1-216ENST00000507944 NACADO15069 1562 aa43.68■■■■■ 4.58
CLDND1-216ENST00000507944 DCAF8L2P0C7V8 631 aa43.63■■■■■ 4.57
CLDND1-216ENST00000507944 MYO15BQ96JP2 1530 aa43.16■■■■■ 4.5
CLDND1-216ENST00000507944 DNAJC5BQ9UF47 199 aa42.98■■■■■ 4.47
CLDND1-216ENST00000507944 PABPN1Q86U42 306 aaKnown RBP eCLIP42.95■■■■■ 4.47
CLDND1-216ENST00000507944 UNC13AQ9UPW8 1703 aa42.9■■■■■ 4.46
CLDND1-216ENST00000507944 ZCCHC6Q5VYS8 1495 aaKnown RBP42.87■■■■■ 4.45
CLDND1-216ENST00000507944 DCAF1Q9Y4B6 1507 aa42.71■■■■■ 4.43
CLDND1-216ENST00000507944 BICRAQ9NZM4 1560 aa42.61■■■■■ 4.41
CLDND1-216ENST00000507944 SCRIBQ14160 1630 aa42.16■■■■■ 4.34
CLDND1-216ENST00000507944 SHROOM4Q9ULL8 1493 aa42.04■■■■■ 4.32
CLDND1-216ENST00000507944 CC2D2AQ9P2K1 1620 aa41.58■■■■■ 4.25
CLDND1-216ENST00000507944 EIF4G1Q04637 1599 aaKnown RBP41.54■■■■■ 4.24
CLDND1-216ENST00000507944 CECR2Q9BXF3 1484 aa41.43■■■■■ 4.22
CLDND1-216ENST00000507944 NCAPD3P42695 1498 aa40.34■■■■■ 4.05
CLDND1-216ENST00000507944 SMARCA4P51532 1647 aa40.25■■■■■ 4.03
CLDND1-216ENST00000507944 ATAD2BQ9ULI0 1458 aa40.25■■■■■ 4.03
CLDND1-216ENST00000507944 SMARCA2P51531 1590 aa40.14■■■■■ 4.02
CLDND1-216ENST00000507944 BAZ1AQ9NRL2 1556 aaPredicted RBP40.1■■■■■ 4.01
CLDND1-216ENST00000507944 HMGXB3Q12766 1538 aa40.02■■■■■ 4
CLDND1-216ENST00000507944 BAZ1BQ9UIG0 1483 aaKnown RBP39.87■■■■□ 3.97
CLDND1-216ENST00000507944 PEG3Q9GZU2 1588 aa39.85■■■■□ 3.97
CLDND1-216ENST00000507944 MROH2BQ7Z745 1585 aa39.84■■■■□ 3.97
CLDND1-216ENST00000507944 ERCC6Q03468 1493 aa39.73■■■■□ 3.95
CLDND1-216ENST00000507944 NESP48681 1621 aa39.61■■■■□ 3.93
CLDND1-216ENST00000507944 CUX2O14529 1486 aa39.54■■■■□ 3.92
CLDND1-216ENST00000507944 WIZO95785 1651 aa39.37■■■■□ 3.89
CLDND1-216ENST00000507944 LAMC3Q9Y6N6 1575 aa39.36■■■■□ 3.89
CLDND1-216ENST00000507944 DNAJC5Q9H3Z4 198 aa39.28■■■■□ 3.88
CLDND1-216ENST00000507944 PDS5BQ9NTI5 1447 aa39.16■■■■□ 3.86
CLDND1-216ENST00000507944 CADPSQ9ULU8 1353 aa39.14■■■■□ 3.86
CLDND1-216ENST00000507944 RSF1Q96T23 1441 aaPredicted RBP39.13■■■■□ 3.85
CLDND1-216ENST00000507944 THOC2Q8NI27 1593 aaKnown RBP39.11■■■■□ 3.85
CLDND1-216ENST00000507944 KIF21AQ7Z4S6 1674 aa39.08■■■■□ 3.85
CLDND1-216ENST00000507944 TOP2AP11388 1531 aaKnown RBP38.88■■■■□ 3.81
CLDND1-216ENST00000507944 MRC2Q9UBG0 1479 aa38.78■■■■□ 3.8
CLDND1-216ENST00000507944 CFTRP13569 1480 aa38.73■■■■□ 3.79
CLDND1-216ENST00000507944 CEP164Q9UPV0 1460 aa38.68■■■■□ 3.78
CLDND1-216ENST00000507944 FANCD2Q9BXW9 1451 aa38.67■■■■□ 3.78
CLDND1-216ENST00000507944 WDR62O43379 1518 aa38.65■■■■□ 3.78
CLDND1-216ENST00000507944 CCDC88BA6NC98 1476 aa38.47■■■■□ 3.75
CLDND1-216ENST00000507944 URB2Q14146 1524 aaKnown RBP38.33■■■■□ 3.73
CLDND1-216ENST00000507944 PRDM2Q13029 1718 aa38.32■■■■□ 3.73
CLDND1-216ENST00000507944 TOPBP1Q92547 1522 aa37.97■■■■□ 3.67
CLDND1-216ENST00000507944 ABCC8Q09428 1581 aa37.93■■■■□ 3.66
CLDND1-216ENST00000507944 IFT140Q96RY7 1462 aa37.91■■■■□ 3.66
CLDND1-216ENST00000507944 OSCARQ8IYS5 282 aa37.87■■■■□ 3.65
CLDND1-216ENST00000507944 DNMBPQ6XZF7 1577 aa37.84■■■■□ 3.65
CLDND1-216ENST00000507944 ZNF608Q9ULD9 1512 aaPredicted RBP37.82■■■■□ 3.65
CLDND1-216ENST00000507944 TRIM41Q8WV44 630 aa37.68■■■■□ 3.62
CLDND1-216ENST00000507944 SUPT5HO00267 1087 aaKnown RBP37.67■■■■□ 3.62
CLDND1-216ENST00000507944 POLA1P09884 1462 aaPredicted RBP37.59■■■■□ 3.61
CLDND1-216ENST00000507944 TARBP1Q13395 1621 aaKnown RBP37.59■■■■□ 3.61
CLDND1-216ENST00000507944 EIF4G3O43432 1585 aaKnown RBP37.58■■■■□ 3.61
CLDND1-216ENST00000507944 AQRO60306 1485 aaKnown RBP eCLIP37.54■■■■□ 3.6
CLDND1-216ENST00000507944 RAD54L2Q9Y4B4 1467 aa37.47■■■■□ 3.59
CLDND1-216ENST00000507944 SOGA1O94964 1423 aa37.47■■■■□ 3.59
CLDND1-216ENST00000507944 CUX1P39880 1505 aa37.41■■■■□ 3.58
CLDND1-216ENST00000507944 FGD5Q6ZNL6 1462 aa37.4■■■■□ 3.58
CLDND1-216ENST00000507944 TDRD9Q8NDG6 1382 aaKnown RBP37.36■■■■□ 3.57
CLDND1-216ENST00000507944 FBLN2P98095 1184 aa37.29■■■■□ 3.56
CLDND1-216ENST00000507944 CHD1O14646 1710 aa37.27■■■■□ 3.56
CLDND1-216ENST00000507944 RIMBP3CA6NJZ7 1639 aa37.25■■■■□ 3.55
CLDND1-216ENST00000507944 RIMBP3BA6NNM3 1639 aa37.25■■■■□ 3.55
CLDND1-216ENST00000507944 RIMBP3Q9UFD9 1639 aa37.25■■■■□ 3.55
CLDND1-216ENST00000507944 WDR97A6NE52 1622 aa37.21■■■■□ 3.55
CLDND1-216ENST00000507944 ARHGEF11O15085 1522 aa37.17■■■■□ 3.54
CLDND1-216ENST00000507944 SNAPC4Q5SXM2 1469 aa37.13■■■■□ 3.53
CLDND1-216ENST00000507944 GRIN2BQ13224 1484 aa37.09■■■■□ 3.53
CLDND1-216ENST00000507944 CHMP7Q8WUX9 453 aaPredicted RBP37.05■■■■□ 3.52
CLDND1-216ENST00000507944 MAGI1Q96QZ7 1491 aaPredicted RBP37.05■■■■□ 3.52
CLDND1-216ENST00000507944 GAPVD1Q14C86 1478 aa37■■■■□ 3.51
CLDND1-216ENST00000507944 ABCA10Q8WWZ4 1543 aa37■■■■□ 3.51
CLDND1-216ENST00000507944 CYB5RLQ6IPT4 315 aa36.97■■■■□ 3.51
CLDND1-216ENST00000507944 SYNJ2O15056 1496 aa36.93■■■■□ 3.5
CLDND1-216ENST00000507944 WRNQ14191 1432 aaPredicted RBP eCLIP36.93■■■■□ 3.5
CLDND1-216ENST00000507944 PBRM1Q86U86 1689 aa36.92■■■■□ 3.5
CLDND1-216ENST00000507944 TOP2BQ02880 1626 aa36.88■■■■□ 3.49
CLDND1-216ENST00000507944 ABCA5Q8WWZ7 1642 aa36.88■■■■□ 3.49
CLDND1-216ENST00000507944 SYNJ1O43426 1573 aa36.87■■■■□ 3.49
CLDND1-216ENST00000507944 BIVM-ERCC5R4GMW8 1640 aa36.85■■■■□ 3.49
CLDND1-216ENST00000507944 CLASP1Q7Z460 1538 aa36.85■■■■□ 3.49
CLDND1-216ENST00000507944 ARAP1Q96P48 1450 aa36.82■■■■□ 3.49
CLDND1-216ENST00000507944 GRIN2AQ12879 1464 aa36.6■■■■□ 3.45
CLDND1-216ENST00000507944 ADAMTS12P58397 1594 aa36.58■■■■□ 3.45
CLDND1-216ENST00000507944 FHAD1B1AJZ9 1412 aa36.54■■■■□ 3.44
CLDND1-216ENST00000507944 ERICH3Q5RHP9 1530 aa36.53■■■■□ 3.44
CLDND1-216ENST00000507944 NUP160Q12769 1436 aa36.47■■■■□ 3.43
CLDND1-216ENST00000507944 TRHP20396 242 aaPredicted RBP36.46■■■■□ 3.43
CLDND1-216ENST00000507944 CEP170Q5SW79 1584 aa36.44■■■■□ 3.42
CLDND1-216ENST00000507944 ERCC6L2Q5T890 1561 aa36.31■■■■□ 3.4
CLDND1-216ENST00000507944 SHROOM2Q13796 1616 aa36.25■■■■□ 3.39
CLDND1-216ENST00000507944 KIF27Q86VH2 1401 aa36.2■■■■□ 3.39
CLDND1-216ENST00000507944 IGF1RP08069 1367 aa36.18■■■■□ 3.38
CLDND1-216ENST00000507944 JPH4Q96JJ6 628 aa36.17■■■■□ 3.38
CLDND1-216ENST00000507944 PRG4Q92954 1404 aaPredicted RBP36.13■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms