RNA–Protein interactions for RNA: ENST00000507197.5

SNHG4-204, Transcript of small nucleolar RNA host gene 4, humanhuman

TSL 2 BASIC

Gene SNHG4, Length 865 nt, Biotype processed transcript, Subcellular localisation Nucleoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG4-204ENST00000507197 NISCHQ9Y2I1 1504 aa32.02■■■□□ 2.72
SNHG4-204ENST00000507197 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
SNHG4-204ENST00000507197 ABCC9O60706 1549 aa28.69■■■□□ 2.18
SNHG4-204ENST00000507197 RB1CC1Q8TDY2 1594 aa27.37■■□□□ 1.97
SNHG4-204ENST00000507197 NACADO15069 1562 aa27.19■■□□□ 1.94
SNHG4-204ENST00000507197 DCAF8L2P0C7V8 631 aa27.06■■□□□ 1.92
SNHG4-204ENST00000507197 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
SNHG4-204ENST00000507197 DNAJC5BQ9UF47 199 aa26.83■■□□□ 1.89
SNHG4-204ENST00000507197 PABPN1Q86U42 306 aaKnown RBP eCLIP26.71■■□□□ 1.87
SNHG4-204ENST00000507197 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
SNHG4-204ENST00000507197 ZCCHC6Q5VYS8 1495 aaKnown RBP26.54■■□□□ 1.84
SNHG4-204ENST00000507197 DCAF1Q9Y4B6 1507 aa26.49■■□□□ 1.83
SNHG4-204ENST00000507197 BICRAQ9NZM4 1560 aa26.46■■□□□ 1.83
SNHG4-204ENST00000507197 SHROOM4Q9ULL8 1493 aa26.28■■□□□ 1.8
SNHG4-204ENST00000507197 SCRIBQ14160 1630 aa26.13■■□□□ 1.77
SNHG4-204ENST00000507197 CC2D2AQ9P2K1 1620 aa25.9■■□□□ 1.74
SNHG4-204ENST00000507197 EIF4G1Q04637 1599 aaKnown RBP25.87■■□□□ 1.73
SNHG4-204ENST00000507197 CECR2Q9BXF3 1484 aa25.87■■□□□ 1.73
SNHG4-204ENST00000507197 NCAPD3P42695 1498 aa25.1■■□□□ 1.61
SNHG4-204ENST00000507197 ATAD2BQ9ULI0 1458 aa25■■□□□ 1.59
SNHG4-204ENST00000507197 SMARCA2P51531 1590 aa24.97■■□□□ 1.59
SNHG4-204ENST00000507197 SMARCA4P51532 1647 aa24.94■■□□□ 1.58
SNHG4-204ENST00000507197 HMGXB3Q12766 1538 aa24.91■■□□□ 1.58
SNHG4-204ENST00000507197 BAZ1AQ9NRL2 1556 aaPredicted RBP24.88■■□□□ 1.57
SNHG4-204ENST00000507197 ERCC6Q03468 1493 aa24.83■■□□□ 1.57
SNHG4-204ENST00000507197 CUX2O14529 1486 aa24.79■■□□□ 1.56
SNHG4-204ENST00000507197 BAZ1BQ9UIG0 1483 aaKnown RBP24.78■■□□□ 1.56
SNHG4-204ENST00000507197 PEG3Q9GZU2 1588 aa24.73■■□□□ 1.55
SNHG4-204ENST00000507197 DNAJC5Q9H3Z4 198 aa24.73■■□□□ 1.55
SNHG4-204ENST00000507197 MROH2BQ7Z745 1585 aa24.63■■□□□ 1.53
SNHG4-204ENST00000507197 NESP48681 1621 aa24.61■■□□□ 1.53
SNHG4-204ENST00000507197 LAMC3Q9Y6N6 1575 aa24.53■■□□□ 1.52
SNHG4-204ENST00000507197 PDS5BQ9NTI5 1447 aa24.44■■□□□ 1.5
SNHG4-204ENST00000507197 THOC2Q8NI27 1593 aaKnown RBP24.37■■□□□ 1.49
SNHG4-204ENST00000507197 CADPSQ9ULU8 1353 aa24.35■■□□□ 1.49
SNHG4-204ENST00000507197 WIZO95785 1651 aa24.3■■□□□ 1.48
SNHG4-204ENST00000507197 KIF21AQ7Z4S6 1674 aa24.27■■□□□ 1.48
SNHG4-204ENST00000507197 MRC2Q9UBG0 1479 aa24.17■■□□□ 1.46
SNHG4-204ENST00000507197 RSF1Q96T23 1441 aaPredicted RBP24.16■■□□□ 1.46
SNHG4-204ENST00000507197 CEP164Q9UPV0 1460 aa24.09■■□□□ 1.45
SNHG4-204ENST00000507197 WDR62O43379 1518 aa24.09■■□□□ 1.45
SNHG4-204ENST00000507197 TOP2AP11388 1531 aaKnown RBP24.07■■□□□ 1.44
SNHG4-204ENST00000507197 CFTRP13569 1480 aa24.06■■□□□ 1.44
SNHG4-204ENST00000507197 FANCD2Q9BXW9 1451 aa24.05■■□□□ 1.44
SNHG4-204ENST00000507197 URB2Q14146 1524 aaKnown RBP23.79■■□□□ 1.4
SNHG4-204ENST00000507197 CCDC88BA6NC98 1476 aa23.79■■□□□ 1.4
SNHG4-204ENST00000507197 PRDM2Q13029 1718 aa23.73■■□□□ 1.39
SNHG4-204ENST00000507197 OSCARQ8IYS5 282 aa23.68■■□□□ 1.38
SNHG4-204ENST00000507197 TRIM41Q8WV44 630 aa23.64■■□□□ 1.37
SNHG4-204ENST00000507197 IFT140Q96RY7 1462 aa23.62■■□□□ 1.37
SNHG4-204ENST00000507197 ABCC8Q09428 1581 aa23.61■■□□□ 1.37
SNHG4-204ENST00000507197 TOPBP1Q92547 1522 aa23.58■■□□□ 1.36
SNHG4-204ENST00000507197 DNMBPQ6XZF7 1577 aa23.5■■□□□ 1.35
SNHG4-204ENST00000507197 ZNF608Q9ULD9 1512 aaPredicted RBP23.49■■□□□ 1.35
SNHG4-204ENST00000507197 EIF4G3O43432 1585 aaKnown RBP23.38■■□□□ 1.33
SNHG4-204ENST00000507197 POLA1P09884 1462 aaPredicted RBP23.34■■□□□ 1.33
SNHG4-204ENST00000507197 TARBP1Q13395 1621 aaKnown RBP23.33■■□□□ 1.32
SNHG4-204ENST00000507197 AQRO60306 1485 aaKnown RBP eCLIP23.31■■□□□ 1.324e-10■■■■■ 32.5
SNHG4-204ENST00000507197 SOGA1O94964 1423 aa23.26■■□□□ 1.31
SNHG4-204ENST00000507197 RIMBP3CA6NJZ7 1639 aa23.26■■□□□ 1.31
SNHG4-204ENST00000507197 RIMBP3BA6NNM3 1639 aa23.26■■□□□ 1.31
SNHG4-204ENST00000507197 RIMBP3Q9UFD9 1639 aa23.26■■□□□ 1.31
SNHG4-204ENST00000507197 ARHGEF11O15085 1522 aa23.23■■□□□ 1.31
SNHG4-204ENST00000507197 FBLN2P98095 1184 aa23.22■■□□□ 1.31
SNHG4-204ENST00000507197 RAD54L2Q9Y4B4 1467 aa23.22■■□□□ 1.31
SNHG4-204ENST00000507197 FGD5Q6ZNL6 1462 aa23.19■■□□□ 1.3
SNHG4-204ENST00000507197 WDR97A6NE52 1622 aa23.19■■□□□ 1.3
SNHG4-204ENST00000507197 TDRD9Q8NDG6 1382 aaKnown RBP23.18■■□□□ 1.3
SNHG4-204ENST00000507197 CHD1O14646 1710 aa23.15■■□□□ 1.3
SNHG4-204ENST00000507197 CUX1P39880 1505 aa23.14■■□□□ 1.3
SNHG4-204ENST00000507197 SUPT5HO00267 1087 aaKnown RBP23.13■■□□□ 1.29
SNHG4-204ENST00000507197 CYB5RLQ6IPT4 315 aa23.09■■□□□ 1.29
SNHG4-204ENST00000507197 SNAPC4Q5SXM2 1469 aa23.09■■□□□ 1.29
SNHG4-204ENST00000507197 GRIN2BQ13224 1484 aa23.07■■□□□ 1.28
SNHG4-204ENST00000507197 MAGI1Q96QZ7 1491 aaPredicted RBP23.07■■□□□ 1.28
SNHG4-204ENST00000507197 CHMP7Q8WUX9 453 aaPredicted RBP23.07■■□□□ 1.28
SNHG4-204ENST00000507197 SYNJ1O43426 1573 aa22.99■■□□□ 1.27
SNHG4-204ENST00000507197 SYNJ2O15056 1496 aa22.98■■□□□ 1.27
SNHG4-204ENST00000507197 GAPVD1Q14C86 1478 aa22.98■■□□□ 1.27
SNHG4-204ENST00000507197 ARAP1Q96P48 1450 aa22.98■■□□□ 1.27
SNHG4-204ENST00000507197 ABCA10Q8WWZ4 1543 aa22.96■■□□□ 1.27
SNHG4-204ENST00000507197 CLASP1Q7Z460 1538 aa22.94■■□□□ 1.26
SNHG4-204ENST00000507197 WRNQ14191 1432 aaPredicted RBP eCLIP22.91■■□□□ 1.26
SNHG4-204ENST00000507197 PBRM1Q86U86 1689 aa22.88■■□□□ 1.25
SNHG4-204ENST00000507197 ABCA5Q8WWZ7 1642 aa22.87■■□□□ 1.25
SNHG4-204ENST00000507197 TRHP20396 242 aaPredicted RBP22.86■■□□□ 1.25
SNHG4-204ENST00000507197 TOP2BQ02880 1626 aa22.81■■□□□ 1.24
SNHG4-204ENST00000507197 BIVM-ERCC5R4GMW8 1640 aa22.79■■□□□ 1.24
SNHG4-204ENST00000507197 GRIN2AQ12879 1464 aa22.75■■□□□ 1.23
SNHG4-204ENST00000507197 FHAD1B1AJZ9 1412 aa22.71■■□□□ 1.23
SNHG4-204ENST00000507197 ADAMTS12P58397 1594 aa22.71■■□□□ 1.23
SNHG4-204ENST00000507197 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
SNHG4-204ENST00000507197 NUP160Q12769 1436 aa22.67■■□□□ 1.22
SNHG4-204ENST00000507197 CEP170Q5SW79 1584 aa22.61■■□□□ 1.21
SNHG4-204ENST00000507197 SHROOM2Q13796 1616 aa22.53■■□□□ 1.2
SNHG4-204ENST00000507197 ERCC6L2Q5T890 1561 aa22.52■■□□□ 1.2
SNHG4-204ENST00000507197 JPH4Q96JJ6 628 aa22.47■■□□□ 1.19
SNHG4-204ENST00000507197 PRG4Q92954 1404 aaPredicted RBP22.47■■□□□ 1.19
SNHG4-204ENST00000507197 KIF27Q86VH2 1401 aa22.43■■□□□ 1.18
SNHG4-204ENST00000507197 RUSC2Q8N2Y8 1516 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms