RNA–Protein interactions for RNA: ENST00000506163.5

SMN1-204, Transcript of survival of motor neuron 1, telomeric, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMN1, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN1-204ENST00000506163 NISCHQ9Y2I1 1504 aa43.49■■■■■ 4.55
SMN1-204ENST00000506163 CCDC180Q9P1Z9 1646 aa38.56■■■■□ 3.76
SMN1-204ENST00000506163 ABCC9O60706 1549 aa37.9■■■■□ 3.66
SMN1-204ENST00000506163 DCAF8L2P0C7V8 631 aa36.4■■■■□ 3.42
SMN1-204ENST00000506163 RB1CC1Q8TDY2 1594 aa36.33■■■■□ 3.41
SMN1-204ENST00000506163 NACADO15069 1562 aa36.3■■■■□ 3.4
SMN1-204ENST00000506163 ZCCHC6Q5VYS8 1495 aaKnown RBP36.2■■■■□ 3.39
SMN1-204ENST00000506163 MYO15BQ96JP2 1530 aa36.07■■■■□ 3.36
SMN1-204ENST00000506163 DCAF1Q9Y4B6 1507 aa35.92■■■■□ 3.34
SMN1-204ENST00000506163 UNC13AQ9UPW8 1703 aa35.58■■■■□ 3.29
SMN1-204ENST00000506163 PABPN1Q86U42 306 aaKnown RBP eCLIP35.49■■■■□ 3.27
SMN1-204ENST00000506163 BICRAQ9NZM4 1560 aa35.36■■■■□ 3.25
SMN1-204ENST00000506163 SCRIBQ14160 1630 aa35.28■■■■□ 3.24
SMN1-204ENST00000506163 DNAJC5BQ9UF47 199 aa34.98■■■■□ 3.19
SMN1-204ENST00000506163 SHROOM4Q9ULL8 1493 aa34.8■■■■□ 3.16
SMN1-204ENST00000506163 EIF4G1Q04637 1599 aaKnown RBP34.37■■■■□ 3.09
SMN1-204ENST00000506163 CC2D2AQ9P2K1 1620 aa34.24■■■■□ 3.07
SMN1-204ENST00000506163 CECR2Q9BXF3 1484 aa34.02■■■■□ 3.04
SMN1-204ENST00000506163 SMARCA4P51532 1647 aa33.72■■■□□ 2.99
SMN1-204ENST00000506163 BAZ1AQ9NRL2 1556 aaPredicted RBP33.64■■■□□ 2.98
SMN1-204ENST00000506163 ATAD2BQ9ULI0 1458 aa33.59■■■□□ 2.97
SMN1-204ENST00000506163 NCAPD3P42695 1498 aa33.57■■■□□ 2.96
SMN1-204ENST00000506163 MROH2BQ7Z745 1585 aa33.56■■■□□ 2.96
SMN1-204ENST00000506163 SMARCA2P51531 1590 aa33.46■■■□□ 2.95
SMN1-204ENST00000506163 PEG3Q9GZU2 1588 aa33.38■■■□□ 2.93
SMN1-204ENST00000506163 HMGXB3Q12766 1538 aa33.33■■■□□ 2.93
SMN1-204ENST00000506163 BAZ1BQ9UIG0 1483 aaKnown RBP33.26■■■□□ 2.91
SMN1-204ENST00000506163 RSF1Q96T23 1441 aaPredicted RBP33.18■■■□□ 2.9
SMN1-204ENST00000506163 WIZO95785 1651 aa33.17■■■□□ 2.9
SMN1-204ENST00000506163 NESP48681 1621 aa32.83■■■□□ 2.85
SMN1-204ENST00000506163 TOP2AP11388 1531 aaKnown RBP32.77■■■□□ 2.84
SMN1-204ENST00000506163 LAMC3Q9Y6N6 1575 aa32.6■■■□□ 2.81
SMN1-204ENST00000506163 CADPSQ9ULU8 1353 aa32.6■■■□□ 2.81
SMN1-204ENST00000506163 ERCC6Q03468 1493 aa32.58■■■□□ 2.81
SMN1-204ENST00000506163 CCDC88BA6NC98 1476 aa32.46■■■□□ 2.79
SMN1-204ENST00000506163 PDS5BQ9NTI5 1447 aa32.41■■■□□ 2.78
SMN1-204ENST00000506163 CFTRP13569 1480 aa32.38■■■□□ 2.77
SMN1-204ENST00000506163 KIF21AQ7Z4S6 1674 aa32.35■■■□□ 2.77
SMN1-204ENST00000506163 SUPT5HO00267 1087 aaKnown RBP32.33■■■□□ 2.77
SMN1-204ENST00000506163 THOC2Q8NI27 1593 aaKnown RBP32.25■■■□□ 2.75
SMN1-204ENST00000506163 CUX2O14529 1486 aa32.24■■■□□ 2.75
SMN1-204ENST00000506163 FANCD2Q9BXW9 1451 aa32.2■■■□□ 2.74
SMN1-204ENST00000506163 CEP164Q9UPV0 1460 aa32.11■■■□□ 2.73
SMN1-204ENST00000506163 MRC2Q9UBG0 1479 aa32.09■■■□□ 2.73
SMN1-204ENST00000506163 PRDM2Q13029 1718 aa32.01■■■□□ 2.72
SMN1-204ENST00000506163 WDR62O43379 1518 aa31.99■■■□□ 2.71
SMN1-204ENST00000506163 URB2Q14146 1524 aaKnown RBP31.92■■■□□ 2.7
SMN1-204ENST00000506163 TOPBP1Q92547 1522 aa31.69■■■□□ 2.66
SMN1-204ENST00000506163 DNMBPQ6XZF7 1577 aa31.6■■■□□ 2.65
SMN1-204ENST00000506163 ABCC8Q09428 1581 aa31.59■■■□□ 2.65
SMN1-204ENST00000506163 CUX1P39880 1505 aa31.47■■■□□ 2.63
SMN1-204ENST00000506163 IFT140Q96RY7 1462 aa31.45■■■□□ 2.63
SMN1-204ENST00000506163 POLA1P09884 1462 aaPredicted RBP31.42■■■□□ 2.62
SMN1-204ENST00000506163 ZNF608Q9ULD9 1512 aaPredicted RBP31.42■■■□□ 2.62
SMN1-204ENST00000506163 DNAJC5Q9H3Z4 198 aa31.41■■■□□ 2.62
SMN1-204ENST00000506163 RAD54L2Q9Y4B4 1467 aa31.35■■■□□ 2.61
SMN1-204ENST00000506163 FGD5Q6ZNL6 1462 aa31.34■■■□□ 2.61
SMN1-204ENST00000506163 TARBP1Q13395 1621 aaKnown RBP31.34■■■□□ 2.61
SMN1-204ENST00000506163 SOGA1O94964 1423 aa31.3■■■□□ 2.6
SMN1-204ENST00000506163 AQRO60306 1485 aaKnown RBP eCLIP31.24■■■□□ 2.59
SMN1-204ENST00000506163 WRNQ14191 1432 aaPredicted RBP eCLIP31.22■■■□□ 2.59
SMN1-204ENST00000506163 EIF4G3O43432 1585 aaKnown RBP31.19■■■□□ 2.58
SMN1-204ENST00000506163 SYNJ1O43426 1573 aa31.17■■■□□ 2.58
SMN1-204ENST00000506163 TDRD9Q8NDG6 1382 aaKnown RBP31.17■■■□□ 2.58
SMN1-204ENST00000506163 TOP2BQ02880 1626 aa31.13■■■□□ 2.57
SMN1-204ENST00000506163 BIVM-ERCC5R4GMW8 1640 aa31.11■■■□□ 2.57
SMN1-204ENST00000506163 WDR97A6NE52 1622 aa31.04■■■□□ 2.56
SMN1-204ENST00000506163 ABCA10Q8WWZ4 1543 aa31.02■■■□□ 2.56
SMN1-204ENST00000506163 OSCARQ8IYS5 282 aa30.98■■■□□ 2.55
SMN1-204ENST00000506163 GAPVD1Q14C86 1478 aa30.91■■■□□ 2.54
SMN1-204ENST00000506163 GRIN2BQ13224 1484 aa30.89■■■□□ 2.54
SMN1-204ENST00000506163 SNAPC4Q5SXM2 1469 aa30.88■■■□□ 2.53
SMN1-204ENST00000506163 ABCA5Q8WWZ7 1642 aa30.88■■■□□ 2.53
SMN1-204ENST00000506163 FBLN2P98095 1184 aa30.82■■■□□ 2.52
SMN1-204ENST00000506163 CHD1O14646 1710 aa30.81■■■□□ 2.52
SMN1-204ENST00000506163 PBRM1Q86U86 1689 aa30.8■■■□□ 2.52
SMN1-204ENST00000506163 MAGI1Q96QZ7 1491 aaPredicted RBP30.8■■■□□ 2.52
SMN1-204ENST00000506163 CHMP7Q8WUX9 453 aaPredicted RBP30.73■■■□□ 2.51
SMN1-204ENST00000506163 SYNJ2O15056 1496 aa30.7■■■□□ 2.5
SMN1-204ENST00000506163 ERICH3Q5RHP9 1530 aa30.61■■■□□ 2.49
SMN1-204ENST00000506163 ADAMTS12P58397 1594 aa30.58■■■□□ 2.49
SMN1-204ENST00000506163 FHAD1B1AJZ9 1412 aa30.55■■■□□ 2.48
SMN1-204ENST00000506163 KIF27Q86VH2 1401 aa30.54■■■□□ 2.48
SMN1-204ENST00000506163 IGF1RP08069 1367 aa30.52■■■□□ 2.48
SMN1-204ENST00000506163 GRIN2AQ12879 1464 aa30.51■■■□□ 2.47
SMN1-204ENST00000506163 CLASP1Q7Z460 1538 aa30.5■■■□□ 2.47
SMN1-204ENST00000506163 TRIM41Q8WV44 630 aa30.47■■■□□ 2.47
SMN1-204ENST00000506163 RIMBP3CA6NJZ7 1639 aa30.46■■■□□ 2.47
SMN1-204ENST00000506163 RIMBP3BA6NNM3 1639 aa30.46■■■□□ 2.47
SMN1-204ENST00000506163 RIMBP3Q9UFD9 1639 aa30.46■■■□□ 2.47
SMN1-204ENST00000506163 ARHGEF11O15085 1522 aa30.45■■■□□ 2.47
SMN1-204ENST00000506163 RUSC2Q8N2Y8 1516 aa30.41■■■□□ 2.46
SMN1-204ENST00000506163 NUP160Q12769 1436 aa30.4■■■□□ 2.46
SMN1-204ENST00000506163 CEP170Q5SW79 1584 aa30.38■■■□□ 2.45
SMN1-204ENST00000506163 CARMIL1Q5VZK9 1371 aa30.3■■■□□ 2.44
SMN1-204ENST00000506163 CUL7Q14999 1698 aa30.28■■■□□ 2.44
SMN1-204ENST00000506163 ARAP1Q96P48 1450 aa30.24■■■□□ 2.43
SMN1-204ENST00000506163 CYB5RLQ6IPT4 315 aa30.23■■■□□ 2.43
SMN1-204ENST00000506163 CHIC1Q5VXU3 224 aa30.19■■■□□ 2.42
SMN1-204ENST00000506163 ERCC6L2Q5T890 1561 aa30.17■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms