RNA–Protein interactions for RNA: ENST00000505583.5

GYPB-205, Transcript of glycophorin B (MNS blood group), human

TSL 1 (best)

Gene GYPB, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GYPB-205	ENST00000505583	NISCH	Q9Y2I1	1504 aa		14.88	□□□□□ -0.03
GYPB-205	ENST00000505583	AEBP2	Q6ZN18	517 aa	Predicted RBP	14.08	□□□□□ -0.16
GYPB-205	ENST00000505583	CHIC1	Q5VXU3	224 aa		13.65	□□□□□ -0.22
GYPB-205	ENST00000505583	ABCC9	O60706	1549 aa		13.46	□□□□□ -0.25
GYPB-205	ENST00000505583	CCDC180	Q9P1Z9	1646 aa		13.38	□□□□□ -0.27
GYPB-205	ENST00000505583	RB1CC1	Q8TDY2	1594 aa		12.74	□□□□□ -0.37
GYPB-205	ENST00000505583	DNAJC5B	Q9UF47	199 aa		12.71	□□□□□ -0.37
GYPB-205	ENST00000505583	NACAD	O15069	1562 aa		12.64	□□□□□ -0.39
GYPB-205	ENST00000505583	DCAF8L2	P0C7V8	631 aa		12.57	□□□□□ -0.4
GYPB-205	ENST00000505583	UNC13A	Q9UPW8	1703 aa		12.56	□□□□□ -0.4
GYPB-205	ENST00000505583	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
GYPB-205	ENST00000505583	BICRA	Q9NZM4	1560 aa		12.44	□□□□□ -0.42
GYPB-205	ENST00000505583	MYO15B	Q96JP2	1530 aa		12.42	□□□□□ -0.42
GYPB-205	ENST00000505583	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.33	□□□□□ -0.44
GYPB-205	ENST00000505583	DCAF1	Q9Y4B6	1507 aa		12.26	□□□□□ -0.45
GYPB-205	ENST00000505583	SCRIB	Q14160	1630 aa		12.22	□□□□□ -0.45
GYPB-205	ENST00000505583	CC2D2A	Q9P2K1	1620 aa		12.16	□□□□□ -0.46
GYPB-205	ENST00000505583	SHROOM4	Q9ULL8	1493 aa		12.14	□□□□□ -0.47
GYPB-205	ENST00000505583	EIF4G1	Q04637	1599 aa	Known RBP	12.1	□□□□□ -0.47
GYPB-205	ENST00000505583	CECR2	Q9BXF3	1484 aa		12.1	□□□□□ -0.47
GYPB-205	ENST00000505583	PHF23	Q9BUL5	403 aa	Predicted RBP	12.08	□□□□□ -0.48
GYPB-205	ENST00000505583	SENP3	Q9H4L4	574 aa	Predicted RBP	11.94	□□□□□ -0.5
GYPB-205	ENST00000505583	NCAPD3	P42695	1498 aa		11.68	□□□□□ -0.54
GYPB-205	ENST00000505583	ATAD2B	Q9ULI0	1458 aa		11.64	□□□□□ -0.55
GYPB-205	ENST00000505583	DNAJC5	Q9H3Z4	198 aa		11.64	□□□□□ -0.55
GYPB-205	ENST00000505583	SMARCA4	P51532	1647 aa		11.64	□□□□□ -0.55
GYPB-205	ENST00000505583	HMGXB3	Q12766	1538 aa		11.58	□□□□□ -0.56
GYPB-205	ENST00000505583	SMARCA2	P51531	1590 aa		11.58	□□□□□ -0.56
GYPB-205	ENST00000505583	ERCC6	Q03468	1493 aa		11.57	□□□□□ -0.56
GYPB-205	ENST00000505583	NES	P48681	1621 aa		11.57	□□□□□ -0.56
GYPB-205	ENST00000505583	CUX2	O14529	1486 aa		11.56	□□□□□ -0.56
GYPB-205	ENST00000505583	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.54	□□□□□ -0.56
GYPB-205	ENST00000505583	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.51	□□□□□ -0.57
GYPB-205	ENST00000505583	PEG3	Q9GZU2	1588 aa		11.5	□□□□□ -0.57
GYPB-205	ENST00000505583	MROH2B	Q7Z745	1585 aa		11.5	□□□□□ -0.57
GYPB-205	ENST00000505583	THOC2	Q8NI27	1593 aa	Known RBP	11.45	□□□□□ -0.58
GYPB-205	ENST00000505583	KIF21A	Q7Z4S6	1674 aa		11.43	□□□□□ -0.58
GYPB-205	ENST00000505583	LAMC3	Q9Y6N6	1575 aa		11.41	□□□□□ -0.58
GYPB-205	ENST00000505583	WIZ	O95785	1651 aa		11.37	□□□□□ -0.59
GYPB-205	ENST00000505583	PDS5B	Q9NTI5	1447 aa		11.32	□□□□□ -0.6
GYPB-205	ENST00000505583	CADPS	Q9ULU8	1353 aa		11.3	□□□□□ -0.6
GYPB-205	ENST00000505583	MRC2	Q9UBG0	1479 aa		11.26	□□□□□ -0.61
GYPB-205	ENST00000505583	WDR62	O43379	1518 aa		11.25	□□□□□ -0.61
GYPB-205	ENST00000505583	RSF1	Q96T23	1441 aa	Predicted RBP	11.21	□□□□□ -0.61
GYPB-205	ENST00000505583	CEP164	Q9UPV0	1460 aa		11.2	□□□□□ -0.62
GYPB-205	ENST00000505583	FANCD2	Q9BXW9	1451 aa		11.19	□□□□□ -0.62
GYPB-205	ENST00000505583	CFTR	P13569	1480 aa		11.19	□□□□□ -0.62
GYPB-205	ENST00000505583	TOP2A	P11388	1531 aa	Known RBP	11.18	□□□□□ -0.62
GYPB-205	ENST00000505583	PLPPR3	Q6T4P5	718 aa		11.17	□□□□□ -0.62
GYPB-205	ENST00000505583	FOXD1	Q16676	465 aa		11.15	□□□□□ -0.62
GYPB-205	ENST00000505583	URB2	Q14146	1524 aa	Known RBP	11.14	□□□□□ -0.63
GYPB-205	ENST00000505583	TRIM41	Q8WV44	630 aa		11.12	□□□□□ -0.63
GYPB-205	ENST00000505583	PRDM2	Q13029	1718 aa		11.1	□□□□□ -0.63
GYPB-205	ENST00000505583	CCDC88B	A6NC98	1476 aa		11.06	□□□□□ -0.64
GYPB-205	ENST00000505583	OSCAR	Q8IYS5	282 aa		11.02	□□□□□ -0.65
GYPB-205	ENST00000505583	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.02	□□□□□ -0.65
GYPB-205	ENST00000505583	TOPBP1	Q92547	1522 aa		10.99	□□□□□ -0.65
GYPB-205	ENST00000505583	IFT140	Q96RY7	1462 aa		10.96	□□□□□ -0.65
GYPB-205	ENST00000505583	RIMBP3C	A6NJZ7	1639 aa		10.95	□□□□□ -0.66
GYPB-205	ENST00000505583	RIMBP3B	A6NNM3	1639 aa		10.95	□□□□□ -0.66
GYPB-205	ENST00000505583	RIMBP3	Q9UFD9	1639 aa		10.95	□□□□□ -0.66
GYPB-205	ENST00000505583	EIF4G3	O43432	1585 aa	Known RBP	10.94	□□□□□ -0.66
GYPB-205	ENST00000505583	DNMBP	Q6XZF7	1577 aa		10.93	□□□□□ -0.66
GYPB-205	ENST00000505583	TARBP1	Q13395	1621 aa	Known RBP	10.92	□□□□□ -0.66
GYPB-205	ENST00000505583	CHD1	O14646	1710 aa		10.9	□□□□□ -0.66
GYPB-205	ENST00000505583	ABCC8	Q09428	1581 aa		10.9	□□□□□ -0.67
GYPB-205	ENST00000505583	AQR	O60306	1485 aa	Known RBP eCLIP	10.89	□□□□□ -0.67
GYPB-205	ENST00000505583	ARHGEF11	O15085	1522 aa		10.89	□□□□□ -0.67
GYPB-205	ENST00000505583	POLA1	P09884	1462 aa	Predicted RBP	10.87	□□□□□ -0.67
GYPB-205	ENST00000505583	RAD54L2	Q9Y4B4	1467 aa		10.86	□□□□□ -0.67
GYPB-205	ENST00000505583	TDRD9	Q8NDG6	1382 aa	Known RBP	10.81	□□□□□ -0.68
GYPB-205	ENST00000505583	CUX1	P39880	1505 aa		10.8	□□□□□ -0.68
GYPB-205	ENST00000505583	CYB5RL	Q6IPT4	315 aa		10.8	□□□□□ -0.68
GYPB-205	ENST00000505583	SOGA1	O94964	1423 aa		10.8	□□□□□ -0.68
GYPB-205	ENST00000505583	FGD5	Q6ZNL6	1462 aa		10.8	□□□□□ -0.68
GYPB-205	ENST00000505583	FBLN2	P98095	1184 aa		10.79	□□□□□ -0.68
GYPB-205	ENST00000505583	ARAP1	Q96P48	1450 aa		10.79	□□□□□ -0.68
GYPB-205	ENST00000505583	SNAPC4	Q5SXM2	1469 aa		10.76	□□□□□ -0.69
GYPB-205	ENST00000505583	WDR97	A6NE52	1622 aa		10.76	□□□□□ -0.69
GYPB-205	ENST00000505583	CLASP1	Q7Z460	1538 aa		10.74	□□□□□ -0.69
GYPB-205	ENST00000505583	PBRM1	Q86U86	1689 aa		10.72	□□□□□ -0.69
GYPB-205	ENST00000505583	GRIN2B	Q13224	1484 aa		10.7	□□□□□ -0.7
GYPB-205	ENST00000505583	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.7	□□□□□ -0.7
GYPB-205	ENST00000505583	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.69	□□□□□ -0.7
GYPB-205	ENST00000505583	SYNJ1	O43426	1573 aa		10.69	□□□□□ -0.7
GYPB-205	ENST00000505583	SYNJ2	O15056	1496 aa		10.68	□□□□□ -0.7
GYPB-205	ENST00000505583	ABCA5	Q8WWZ7	1642 aa		10.68	□□□□□ -0.7
GYPB-205	ENST00000505583	GAPVD1	Q14C86	1478 aa		10.68	□□□□□ -0.7
GYPB-205	ENST00000505583	SUPT5H	O00267	1087 aa	Known RBP	10.67	□□□□□ -0.7
GYPB-205	ENST00000505583	TRH	P20396	242 aa	Predicted RBP	10.67	□□□□□ -0.7
GYPB-205	ENST00000505583	ABCA10	Q8WWZ4	1543 aa		10.65	□□□□□ -0.7
GYPB-205	ENST00000505583	ERCC6L2	Q5T890	1561 aa		10.62	□□□□□ -0.71
GYPB-205	ENST00000505583	BIVM-ERCC5	R4GMW8	1640 aa		10.61	□□□□□ -0.71
GYPB-205	ENST00000505583	TOP2B	Q02880	1626 aa		10.59	□□□□□ -0.71
GYPB-205	ENST00000505583	ADRA2B	P18089	450 aa		10.59	□□□□□ -0.71
GYPB-205	ENST00000505583	GRIN2A	Q12879	1464 aa		10.59	□□□□□ -0.71
GYPB-205	ENST00000505583	ADAMTS12	P58397	1594 aa		10.59	□□□□□ -0.71
GYPB-205	ENST00000505583	CEP170	Q5SW79	1584 aa		10.59	□□□□□ -0.71
GYPB-205	ENST00000505583	PPP6R1	Q9UPN7	881 aa		10.58	□□□□□ -0.72
GYPB-205	ENST00000505583	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.58	□□□□□ -0.72

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