RNA–Protein interactions for RNA: ENST00000505207.5

UBE2D3-219, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 5 BASIC

Gene UBE2D3, Length 527 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-219ENST00000505207 NISCHQ9Y2I1 1504 aa27.64■■■□□ 2.02
UBE2D3-219ENST00000505207 ABCC9O60706 1549 aa24.86■■□□□ 1.57
UBE2D3-219ENST00000505207 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
UBE2D3-219ENST00000505207 RB1CC1Q8TDY2 1594 aa23.68■■□□□ 1.38
UBE2D3-219ENST00000505207 NACADO15069 1562 aa23.52■■□□□ 1.36
UBE2D3-219ENST00000505207 DCAF8L2P0C7V8 631 aa23.49■■□□□ 1.35
UBE2D3-219ENST00000505207 DNAJC5BQ9UF47 199 aa23.33■■□□□ 1.33
UBE2D3-219ENST00000505207 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
UBE2D3-219ENST00000505207 PABPN1Q86U42 306 aaKnown RBP eCLIP23.18■■□□□ 1.3
UBE2D3-219ENST00000505207 UNC13AQ9UPW8 1703 aa22.96■■□□□ 1.27
UBE2D3-219ENST00000505207 BICRAQ9NZM4 1560 aa22.88■■□□□ 1.25
UBE2D3-219ENST00000505207 ZCCHC6Q5VYS8 1495 aaKnown RBP22.87■■□□□ 1.25
UBE2D3-219ENST00000505207 DCAF1Q9Y4B6 1507 aa22.86■■□□□ 1.25
UBE2D3-219ENST00000505207 AEBP2Q6ZN18 517 aaPredicted RBP22.83■■□□□ 1.25
UBE2D3-219ENST00000505207 SHROOM4Q9ULL8 1493 aa22.71■■□□□ 1.23
UBE2D3-219ENST00000505207 SCRIBQ14160 1630 aa22.56■■□□□ 1.2
UBE2D3-219ENST00000505207 CECR2Q9BXF3 1484 aa22.42■■□□□ 1.18
UBE2D3-219ENST00000505207 CC2D2AQ9P2K1 1620 aa22.42■■□□□ 1.18
UBE2D3-219ENST00000505207 CHIC1Q5VXU3 224 aa22.39■■□□□ 1.17
UBE2D3-219ENST00000505207 EIF4G1Q04637 1599 aaKnown RBP22.38■■□□□ 1.17
UBE2D3-219ENST00000505207 NCAPD3P42695 1498 aa21.71■■□□□ 1.07
UBE2D3-219ENST00000505207 ATAD2BQ9ULI0 1458 aa21.61■■□□□ 1.05
UBE2D3-219ENST00000505207 SMARCA2P51531 1590 aa21.58■■□□□ 1.05
UBE2D3-219ENST00000505207 DNAJC5Q9H3Z4 198 aa21.57■■□□□ 1.04
UBE2D3-219ENST00000505207 ERCC6Q03468 1493 aa21.54■■□□□ 1.04
UBE2D3-219ENST00000505207 SMARCA4P51532 1647 aa21.53■■□□□ 1.04
UBE2D3-219ENST00000505207 HMGXB3Q12766 1538 aa21.5■■□□□ 1.03
UBE2D3-219ENST00000505207 CUX2O14529 1486 aa21.5■■□□□ 1.03
UBE2D3-219ENST00000505207 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
UBE2D3-219ENST00000505207 BAZ1BQ9UIG0 1483 aaKnown RBP21.43■■□□□ 1.02
UBE2D3-219ENST00000505207 PEG3Q9GZU2 1588 aa21.34■■□□□ 1.01
UBE2D3-219ENST00000505207 NESP48681 1621 aa21.29■■□□□ 1
UBE2D3-219ENST00000505207 MROH2BQ7Z745 1585 aa21.26■□□□□ 0.99
UBE2D3-219ENST00000505207 LAMC3Q9Y6N6 1575 aa21.21■□□□□ 0.99
UBE2D3-219ENST00000505207 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
UBE2D3-219ENST00000505207 CADPSQ9ULU8 1353 aa21.08■□□□□ 0.96
UBE2D3-219ENST00000505207 THOC2Q8NI27 1593 aaKnown RBP21.06■□□□□ 0.96
UBE2D3-219ENST00000505207 WIZO95785 1651 aa20.97■□□□□ 0.95
UBE2D3-219ENST00000505207 KIF21AQ7Z4S6 1674 aa20.97■□□□□ 0.95
UBE2D3-219ENST00000505207 MRC2Q9UBG0 1479 aa20.92■□□□□ 0.94
UBE2D3-219ENST00000505207 RSF1Q96T23 1441 aaPredicted RBP20.86■□□□□ 0.93
UBE2D3-219ENST00000505207 CEP164Q9UPV0 1460 aa20.84■□□□□ 0.93
UBE2D3-219ENST00000505207 WDR62O43379 1518 aa20.82■□□□□ 0.92
UBE2D3-219ENST00000505207 FANCD2Q9BXW9 1451 aa20.8■□□□□ 0.92
UBE2D3-219ENST00000505207 CFTRP13569 1480 aa20.79■□□□□ 0.92
UBE2D3-219ENST00000505207 TOP2AP11388 1531 aaKnown RBP20.76■□□□□ 0.91
UBE2D3-219ENST00000505207 OSCARQ8IYS5 282 aa20.6■□□□□ 0.89
UBE2D3-219ENST00000505207 TRIM41Q8WV44 630 aa20.6■□□□□ 0.89
UBE2D3-219ENST00000505207 URB2Q14146 1524 aaKnown RBP20.58■□□□□ 0.88
UBE2D3-219ENST00000505207 CCDC88BA6NC98 1476 aa20.54■□□□□ 0.88
UBE2D3-219ENST00000505207 PRDM2Q13029 1718 aa20.47■□□□□ 0.87
UBE2D3-219ENST00000505207 IFT140Q96RY7 1462 aa20.44■□□□□ 0.86
UBE2D3-219ENST00000505207 ABCC8Q09428 1581 aa20.44■□□□□ 0.86
UBE2D3-219ENST00000505207 TOPBP1Q92547 1522 aa20.37■□□□□ 0.85
UBE2D3-219ENST00000505207 ZNF608Q9ULD9 1512 aaPredicted RBP20.32■□□□□ 0.84
UBE2D3-219ENST00000505207 DNMBPQ6XZF7 1577 aa20.29■□□□□ 0.84
UBE2D3-219ENST00000505207 EIF4G3O43432 1585 aaKnown RBP20.19■□□□□ 0.82
UBE2D3-219ENST00000505207 AQRO60306 1485 aaKnown RBP eCLIP20.18■□□□□ 0.822e-7■■■□□ 15.8
UBE2D3-219ENST00000505207 FBLN2P98095 1184 aa20.16■□□□□ 0.82
UBE2D3-219ENST00000505207 POLA1P09884 1462 aaPredicted RBP20.16■□□□□ 0.82
UBE2D3-219ENST00000505207 SOGA1O94964 1423 aa20.15■□□□□ 0.82
UBE2D3-219ENST00000505207 RIMBP3CA6NJZ7 1639 aa20.15■□□□□ 0.82
UBE2D3-219ENST00000505207 RIMBP3BA6NNM3 1639 aa20.15■□□□□ 0.82
UBE2D3-219ENST00000505207 TARBP1Q13395 1621 aaKnown RBP20.15■□□□□ 0.82
UBE2D3-219ENST00000505207 RIMBP3Q9UFD9 1639 aa20.15■□□□□ 0.82
UBE2D3-219ENST00000505207 ARHGEF11O15085 1522 aa20.12■□□□□ 0.81
UBE2D3-219ENST00000505207 RAD54L2Q9Y4B4 1467 aa20.08■□□□□ 0.81
UBE2D3-219ENST00000505207 CYB5RLQ6IPT4 315 aa20.08■□□□□ 0.81
UBE2D3-219ENST00000505207 TDRD9Q8NDG6 1382 aaKnown RBP20.08■□□□□ 0.8
UBE2D3-219ENST00000505207 WDR97A6NE52 1622 aa20.03■□□□□ 0.8
UBE2D3-219ENST00000505207 CHMP7Q8WUX9 453 aaPredicted RBP20.03■□□□□ 0.8
UBE2D3-219ENST00000505207 FGD5Q6ZNL6 1462 aa20.03■□□□□ 0.8
UBE2D3-219ENST00000505207 CHD1O14646 1710 aa20.02■□□□□ 0.8
UBE2D3-219ENST00000505207 SUPT5HO00267 1087 aaKnown RBP19.98■□□□□ 0.79
UBE2D3-219ENST00000505207 CUX1P39880 1505 aa19.97■□□□□ 0.79
UBE2D3-219ENST00000505207 SNAPC4Q5SXM2 1469 aa19.97■□□□□ 0.79
UBE2D3-219ENST00000505207 GRIN2BQ13224 1484 aa19.96■□□□□ 0.79
UBE2D3-219ENST00000505207 MAGI1Q96QZ7 1491 aaPredicted RBP19.96■□□□□ 0.79
UBE2D3-219ENST00000505207 TRHP20396 242 aaPredicted RBP19.91■□□□□ 0.78
UBE2D3-219ENST00000505207 ARAP1Q96P48 1450 aa19.9■□□□□ 0.78
UBE2D3-219ENST00000505207 SYNJ1O43426 1573 aa19.89■□□□□ 0.77
UBE2D3-219ENST00000505207 SYNJ2O15056 1496 aa19.88■□□□□ 0.77
UBE2D3-219ENST00000505207 GAPVD1Q14C86 1478 aa19.87■□□□□ 0.77
UBE2D3-219ENST00000505207 CLASP1Q7Z460 1538 aa19.83■□□□□ 0.77
UBE2D3-219ENST00000505207 ABCA10Q8WWZ4 1543 aa19.82■□□□□ 0.76
UBE2D3-219ENST00000505207 WRNQ14191 1432 aaPredicted RBP eCLIP19.81■□□□□ 0.76
UBE2D3-219ENST00000505207 PBRM1Q86U86 1689 aa19.75■□□□□ 0.75
UBE2D3-219ENST00000505207 ABCA5Q8WWZ7 1642 aa19.73■□□□□ 0.75
UBE2D3-219ENST00000505207 GRIN2AQ12879 1464 aa19.67■□□□□ 0.74
UBE2D3-219ENST00000505207 TOP2BQ02880 1626 aa19.66■□□□□ 0.74
UBE2D3-219ENST00000505207 FHAD1B1AJZ9 1412 aa19.64■□□□□ 0.73
UBE2D3-219ENST00000505207 BIVM-ERCC5R4GMW8 1640 aa19.63■□□□□ 0.73
UBE2D3-219ENST00000505207 NUP160Q12769 1436 aa19.6■□□□□ 0.73
UBE2D3-219ENST00000505207 ADAMTS12P58397 1594 aa19.59■□□□□ 0.73
UBE2D3-219ENST00000505207 PHF23Q9BUL5 403 aaPredicted RBP19.59■□□□□ 0.73
UBE2D3-219ENST00000505207 ERICH3Q5RHP9 1530 aa19.59■□□□□ 0.73
UBE2D3-219ENST00000505207 SENP3Q9H4L4 574 aaPredicted RBP19.56■□□□□ 0.72
UBE2D3-219ENST00000505207 CEP170Q5SW79 1584 aa19.53■□□□□ 0.72
UBE2D3-219ENST00000505207 JPH4Q96JJ6 628 aa19.49■□□□□ 0.71
UBE2D3-219ENST00000505207 ERCC6L2Q5T890 1561 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms