RNA–Protein interactions for RNA: ENST00000503842.5

PRDM2-213, Transcript of PR/SET domain 2, humanhuman

TSL 1 (best) BASIC

Gene PRDM2, Length 705 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM2-213ENST00000503842 AEBP2Q6ZN18 517 aaPredicted RBP32.99■■■□□ 2.87
PRDM2-213ENST00000503842 CHIC1Q5VXU3 224 aa32.31■■■□□ 2.76
PRDM2-213ENST00000503842 NISCHQ9Y2I1 1504 aa31.29■■■□□ 2.6
PRDM2-213ENST00000503842 PHF23Q9BUL5 403 aaPredicted RBP28.34■■■□□ 2.13
PRDM2-213ENST00000503842 SENP3Q9H4L4 574 aaPredicted RBP28.13■■■□□ 2.09
PRDM2-213ENST00000503842 CCDC180Q9P1Z9 1646 aa27.52■■■□□ 2
PRDM2-213ENST00000503842 ABCC9O60706 1549 aa26.34■■□□□ 1.81
PRDM2-213ENST00000503842 PLPPR3Q6T4P5 718 aa26.32■■□□□ 1.8
PRDM2-213ENST00000503842 ZCCHC6Q5VYS8 1495 aaKnown RBP26.2■■□□□ 1.78
PRDM2-213ENST00000503842 FOXD1Q16676 465 aa26.02■■□□□ 1.76
PRDM2-213ENST00000503842 DCAF1Q9Y4B6 1507 aa25.93■■□□□ 1.74
PRDM2-213ENST00000503842 DCAF8L2P0C7V8 631 aa25.81■■□□□ 1.72
PRDM2-213ENST00000503842 MYO15BQ96JP2 1530 aa25.8■■□□□ 1.72
PRDM2-213ENST00000503842 NACADO15069 1562 aa25.73■■□□□ 1.71
PRDM2-213ENST00000503842 RB1CC1Q8TDY2 1594 aa25.59■■□□□ 1.69
PRDM2-213ENST00000503842 SCRIBQ14160 1630 aa25.16■■□□□ 1.62
PRDM2-213ENST00000503842 ADRA2BP18089 450 aa25.08■■□□□ 1.61
PRDM2-213ENST00000503842 SHROOM4Q9ULL8 1493 aa25.06■■□□□ 1.6
PRDM2-213ENST00000503842 UNC13AQ9UPW8 1703 aa25.03■■□□□ 1.6
PRDM2-213ENST00000503842 PPP6R1Q9UPN7 881 aa25.02■■□□□ 1.6
PRDM2-213ENST00000503842 BICRAQ9NZM4 1560 aa24.84■■□□□ 1.57
PRDM2-213ENST00000503842 PABPN1Q86U42 306 aaKnown RBP eCLIP24.71■■□□□ 1.55
PRDM2-213ENST00000503842 PIAS4Q8N2W9 510 aaPredicted RBP24.66■■□□□ 1.54
PRDM2-213ENST00000503842 CECR2Q9BXF3 1484 aa24.31■■□□□ 1.48
PRDM2-213ENST00000503842 BAZ1AQ9NRL2 1556 aaPredicted RBP24.19■■□□□ 1.46
PRDM2-213ENST00000503842 SMARCA4P51532 1647 aa24.13■■□□□ 1.45
PRDM2-213ENST00000503842 MROH2BQ7Z745 1585 aa24.12■■□□□ 1.45
PRDM2-213ENST00000503842 EIF4G1Q04637 1599 aaKnown RBP24.11■■□□□ 1.45
PRDM2-213ENST00000503842 RSF1Q96T23 1441 aaPredicted RBP24.08■■□□□ 1.44
PRDM2-213ENST00000503842 MSH5O43196 834 aa24.07■■□□□ 1.44
PRDM2-213ENST00000503842 PEG3Q9GZU2 1588 aa23.91■■□□□ 1.42
PRDM2-213ENST00000503842 WIZO95785 1651 aa23.87■■□□□ 1.41
PRDM2-213ENST00000503842 SUPT5HO00267 1087 aaKnown RBP23.87■■□□□ 1.41
PRDM2-213ENST00000503842 ATAD2BQ9ULI0 1458 aa23.86■■□□□ 1.41
PRDM2-213ENST00000503842 CC2D2AQ9P2K1 1620 aa23.85■■□□□ 1.41
PRDM2-213ENST00000503842 SMARCA2P51531 1590 aa23.84■■□□□ 1.41
PRDM2-213ENST00000503842 NCAPD3P42695 1498 aa23.75■■□□□ 1.39
PRDM2-213ENST00000503842 HMGXB3Q12766 1538 aa23.69■■□□□ 1.38
PRDM2-213ENST00000503842 BAZ1BQ9UIG0 1483 aaKnown RBP23.68■■□□□ 1.38
PRDM2-213ENST00000503842 TOP2AP11388 1531 aaKnown RBP23.67■■□□□ 1.38
PRDM2-213ENST00000503842 DNAJC5BQ9UF47 199 aa23.64■■□□□ 1.37
PRDM2-213ENST00000503842 CCDC88BA6NC98 1476 aa23.39■■□□□ 1.34
PRDM2-213ENST00000503842 PPP4R3CPQ6ZMV5 832 aa23.17■■□□□ 1.3
PRDM2-213ENST00000503842 CADPSQ9ULU8 1353 aa23.09■■□□□ 1.29
PRDM2-213ENST00000503842 CFTRP13569 1480 aa23.09■■□□□ 1.29
PRDM2-213ENST00000503842 SCAF1Q9H7N4 1312 aaKnown RBP23.05■■□□□ 1.28
PRDM2-213ENST00000503842 LAMC3Q9Y6N6 1575 aa23■■□□□ 1.27
PRDM2-213ENST00000503842 NESP48681 1621 aa22.98■■□□□ 1.27
PRDM2-213ENST00000503842 PRDM2Q13029 1718 aa22.94■■□□□ 1.26
PRDM2-213ENST00000503842 PDS5BQ9NTI5 1447 aa22.82■■□□□ 1.24
PRDM2-213ENST00000503842 FANCD2Q9BXW9 1451 aa22.81■■□□□ 1.24
PRDM2-213ENST00000503842 MAPK8IP2Q13387 824 aaPredicted RBP22.72■■□□□ 1.23
PRDM2-213ENST00000503842 CEP164Q9UPV0 1460 aa22.72■■□□□ 1.23
PRDM2-213ENST00000503842 ABCC8Q09428 1581 aa22.72■■□□□ 1.23
PRDM2-213ENST00000503842 KIF21AQ7Z4S6 1674 aa22.71■■□□□ 1.23
PRDM2-213ENST00000503842 NCBP3Q53F19 620 aaKnown RBP22.67■■□□□ 1.22
PRDM2-213ENST00000503842 WRNQ14191 1432 aaPredicted RBP eCLIP22.66■■□□□ 1.229e-6■■■■■ 50.1
PRDM2-213ENST00000503842 KCNA4P22459 653 aa22.66■■□□□ 1.22
PRDM2-213ENST00000503842 ERCC6Q03468 1493 aa22.62■■□□□ 1.21
PRDM2-213ENST00000503842 CUX1P39880 1505 aa22.6■■□□□ 1.21
PRDM2-213ENST00000503842 SYNJ1O43426 1573 aa22.59■■□□□ 1.21
PRDM2-213ENST00000503842 MRC2Q9UBG0 1479 aa22.57■■□□□ 1.2
PRDM2-213ENST00000503842 URB2Q14146 1524 aaKnown RBP22.57■■□□□ 1.2
PRDM2-213ENST00000503842 TOP2BQ02880 1626 aa22.55■■□□□ 1.2
PRDM2-213ENST00000503842 DNMBPQ6XZF7 1577 aa22.55■■□□□ 1.2
PRDM2-213ENST00000503842 BIVM-ERCC5R4GMW8 1640 aa22.54■■□□□ 1.2
PRDM2-213ENST00000503842 TOPBP1Q92547 1522 aa22.53■■□□□ 1.2
PRDM2-213ENST00000503842 TRIM41Q8WV44 630 aa22.52■■□□□ 1.2
PRDM2-213ENST00000503842 CNKSR2Q8WXI2 1034 aa22.52■■□□□ 1.2
PRDM2-213ENST00000503842 THOC2Q8NI27 1593 aaKnown RBP22.51■■□□□ 1.19
PRDM2-213ENST00000503842 WDR62O43379 1518 aa22.48■■□□□ 1.19
PRDM2-213ENST00000503842 FGD5Q6ZNL6 1462 aa22.41■■□□□ 1.18
PRDM2-213ENST00000503842 DMRT2Q9Y5R5 561 aa22.39■■□□□ 1.17
PRDM2-213ENST00000503842 POLA1P09884 1462 aaPredicted RBP22.38■■□□□ 1.17
PRDM2-213ENST00000503842 CUX2O14529 1486 aa22.29■■□□□ 1.16
PRDM2-213ENST00000503842 SOGA1O94964 1423 aa22.28■■□□□ 1.16
PRDM2-213ENST00000503842 RAD54L2Q9Y4B4 1467 aa22.28■■□□□ 1.16
PRDM2-213ENST00000503842 ABCA10Q8WWZ4 1543 aa22.24■■□□□ 1.15
PRDM2-213ENST00000503842 TARBP1Q13395 1621 aaKnown RBP22.23■■□□□ 1.15
PRDM2-213ENST00000503842 IFT140Q96RY7 1462 aa22.22■■□□□ 1.15
PRDM2-213ENST00000503842 NPM3O75607 178 aaKnown RBP22.22■■□□□ 1.15
PRDM2-213ENST00000503842 WDR97A6NE52 1622 aa22.2■■□□□ 1.14
PRDM2-213ENST00000503842 RUSC2Q8N2Y8 1516 aa22.14■■□□□ 1.13
PRDM2-213ENST00000503842 EEA1Q15075 1411 aa22.14■■□□□ 1.13
PRDM2-213ENST00000503842 KIF27Q86VH2 1401 aa22.14■■□□□ 1.13
PRDM2-213ENST00000503842 ABCA5Q8WWZ7 1642 aa22.09■■□□□ 1.13
PRDM2-213ENST00000503842 ZNF608Q9ULD9 1512 aaPredicted RBP22.08■■□□□ 1.13
PRDM2-213ENST00000503842 TDRD9Q8NDG6 1382 aaKnown RBP22.08■■□□□ 1.12
PRDM2-213ENST00000503842 RNF216Q9NWF9 866 aaPredicted RBP22.05■■□□□ 1.12
PRDM2-213ENST00000503842 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
PRDM2-213ENST00000503842 FAM9AQ8IZU1 332 aaPredicted RBP22.04■■□□□ 1.12
PRDM2-213ENST00000503842 AQRO60306 1485 aaKnown RBP eCLIP22.03■■□□□ 1.12
PRDM2-213ENST00000503842 EIF4G3O43432 1585 aaKnown RBP22■■□□□ 1.11
PRDM2-213ENST00000503842 CSRNP3Q8WYN3 585 aa22■■□□□ 1.11
PRDM2-213ENST00000503842 IGF1RP08069 1367 aa21.99■■□□□ 1.11
PRDM2-213ENST00000503842 ERICH3Q5RHP9 1530 aa21.96■■□□□ 1.11
PRDM2-213ENST00000503842 GRIN2BQ13224 1484 aa21.95■■□□□ 1.1
PRDM2-213ENST00000503842 PBRM1Q86U86 1689 aa21.94■■□□□ 1.1
PRDM2-213ENST00000503842 HOXD11P31277 338 aaPredicted RBP21.9■■□□□ 1.1
PRDM2-213ENST00000503842 PRXQ9BXM0 1461 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms