RNA–Protein interactions for RNA: ENST00000503464.1

TOPBP1-203, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 525 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-203ENST00000503464 NISCHQ9Y2I1 1504 aa16.1■□□□□ 0.17
TOPBP1-203ENST00000503464 AEBP2Q6ZN18 517 aaPredicted RBP15.99■□□□□ 0.15
TOPBP1-203ENST00000503464 CHIC1Q5VXU3 224 aa15.06■□□□□ 0
TOPBP1-203ENST00000503464 CCDC180Q9P1Z9 1646 aa14.13□□□□□ -0.15
TOPBP1-203ENST00000503464 SENP3Q9H4L4 574 aaPredicted RBP13.88□□□□□ -0.19
TOPBP1-203ENST00000503464 PHF23Q9BUL5 403 aaPredicted RBP13.54□□□□□ -0.24
TOPBP1-203ENST00000503464 ZCCHC6Q5VYS8 1495 aaKnown RBP13.53□□□□□ -0.24
TOPBP1-203ENST00000503464 POTEDQ86YR6 584 aa13.42□□□□□ -0.26
TOPBP1-203ENST00000503464 ABCC9O60706 1549 aa13.36□□□□□ -0.27
TOPBP1-203ENST00000503464 DCAF1Q9Y4B6 1507 aa13.32□□□□□ -0.28
TOPBP1-203ENST00000503464 MYO15BQ96JP2 1530 aa13.18□□□□□ -0.3
TOPBP1-203ENST00000503464 DCAF8L2P0C7V8 631 aa13.14□□□□□ -0.31
TOPBP1-203ENST00000503464 NACADO15069 1562 aa13.12□□□□□ -0.31
TOPBP1-203ENST00000503464 RB1CC1Q8TDY2 1594 aa13.03□□□□□ -0.32
TOPBP1-203ENST00000503464 SHROOM4Q9ULL8 1493 aa13□□□□□ -0.33
TOPBP1-203ENST00000503464 SCRIBQ14160 1630 aa12.95□□□□□ -0.34
TOPBP1-203ENST00000503464 FOXD1Q16676 465 aa12.94□□□□□ -0.34
TOPBP1-203ENST00000503464 UNC13AQ9UPW8 1703 aa12.9□□□□□ -0.34
TOPBP1-203ENST00000503464 BICRAQ9NZM4 1560 aa12.72□□□□□ -0.37
TOPBP1-203ENST00000503464 PABPN1Q86U42 306 aaKnown RBP eCLIP12.54□□□□□ -0.4
TOPBP1-203ENST00000503464 CECR2Q9BXF3 1484 aa12.53□□□□□ -0.4
TOPBP1-203ENST00000503464 MSH5O43196 834 aa12.51□□□□□ -0.41
TOPBP1-203ENST00000503464 MROH2BQ7Z745 1585 aa12.45□□□□□ -0.42
TOPBP1-203ENST00000503464 RSF1Q96T23 1441 aaPredicted RBP12.44□□□□□ -0.42
TOPBP1-203ENST00000503464 SMARCA4P51532 1647 aa12.42□□□□□ -0.42
TOPBP1-203ENST00000503464 BAZ1AQ9NRL2 1556 aaPredicted RBP12.42□□□□□ -0.42
TOPBP1-203ENST00000503464 SUPT5HO00267 1087 aaKnown RBP12.4□□□□□ -0.42
TOPBP1-203ENST00000503464 WIZO95785 1651 aa12.37□□□□□ -0.43
TOPBP1-203ENST00000503464 EIF4G1Q04637 1599 aaKnown RBP12.29□□□□□ -0.44
TOPBP1-203ENST00000503464 PEG3Q9GZU2 1588 aa12.28□□□□□ -0.44
TOPBP1-203ENST00000503464 TOP2AP11388 1531 aaKnown RBP12.21□□□□□ -0.46
TOPBP1-203ENST00000503464 ATAD2BQ9ULI0 1458 aa12.2□□□□□ -0.46
TOPBP1-203ENST00000503464 SMARCA2P51531 1590 aa12.18□□□□□ -0.46
TOPBP1-203ENST00000503464 CC2D2AQ9P2K1 1620 aa12.14□□□□□ -0.47
TOPBP1-203ENST00000503464 HMGXB3Q12766 1538 aa12.11□□□□□ -0.47
TOPBP1-203ENST00000503464 BAZ1BQ9UIG0 1483 aaKnown RBP12.1□□□□□ -0.47
TOPBP1-203ENST00000503464 NCAPD3P42695 1498 aa12.09□□□□□ -0.47
TOPBP1-203ENST00000503464 CCDC88BA6NC98 1476 aa12.06□□□□□ -0.48
TOPBP1-203ENST00000503464 PIAS4Q8N2W9 510 aaPredicted RBP11.96□□□□□ -0.49
TOPBP1-203ENST00000503464 DNAJC5BQ9UF47 199 aa11.87□□□□□ -0.51
TOPBP1-203ENST00000503464 PRDM2Q13029 1718 aa11.86□□□□□ -0.51
TOPBP1-203ENST00000503464 CFTRP13569 1480 aa11.82□□□□□ -0.52
TOPBP1-203ENST00000503464 ABCC8Q09428 1581 aa11.8□□□□□ -0.52
TOPBP1-203ENST00000503464 CADPSQ9ULU8 1353 aa11.75□□□□□ -0.53
TOPBP1-203ENST00000503464 NESP48681 1621 aa11.75□□□□□ -0.53
TOPBP1-203ENST00000503464 SYNJ1O43426 1573 aa11.72□□□□□ -0.53
TOPBP1-203ENST00000503464 LAMC3Q9Y6N6 1575 aa11.72□□□□□ -0.53
TOPBP1-203ENST00000503464 WRNQ14191 1432 aaPredicted RBP eCLIP11.68□□□□□ -0.54
TOPBP1-203ENST00000503464 BIVM-ERCC5R4GMW8 1640 aa11.68□□□□□ -0.54
TOPBP1-203ENST00000503464 TOP2BQ02880 1626 aa11.66□□□□□ -0.54
TOPBP1-203ENST00000503464 CUX1P39880 1505 aa11.65□□□□□ -0.54
TOPBP1-203ENST00000503464 KIF21AQ7Z4S6 1674 aa11.65□□□□□ -0.54
TOPBP1-203ENST00000503464 TRIM41Q8WV44 630 aa11.65□□□□□ -0.54
TOPBP1-203ENST00000503464 FANCD2Q9BXW9 1451 aa11.64□□□□□ -0.55
TOPBP1-203ENST00000503464 CEP164Q9UPV0 1460 aa11.57□□□□□ -0.56
TOPBP1-203ENST00000503464 DNMBPQ6XZF7 1577 aa11.56□□□□□ -0.56
TOPBP1-203ENST00000503464 PDS5BQ9NTI5 1447 aa11.55□□□□□ -0.56
TOPBP1-203ENST00000503464 URB2Q14146 1524 aaKnown RBP11.55□□□□□ -0.56
TOPBP1-203ENST00000503464 TOPBP1Q92547 1522 aa11.54□□□□□ -0.56
TOPBP1-203ENST00000503464 SOGA1O94964 1423 aa11.53□□□□□ -0.56
TOPBP1-203ENST00000503464 RUSC2Q8N2Y8 1516 aa11.52□□□□□ -0.57
TOPBP1-203ENST00000503464 FGD5Q6ZNL6 1462 aa11.51□□□□□ -0.57
TOPBP1-203ENST00000503464 PPP6R1Q9UPN7 881 aa11.49□□□□□ -0.57
TOPBP1-203ENST00000503464 THOC2Q8NI27 1593 aaKnown RBP11.48□□□□□ -0.57
TOPBP1-203ENST00000503464 WDR97A6NE52 1622 aa11.48□□□□□ -0.57
TOPBP1-203ENST00000503464 POLA1P09884 1462 aaPredicted RBP11.47□□□□□ -0.57
TOPBP1-203ENST00000503464 MRC2Q9UBG0 1479 aa11.47□□□□□ -0.57
TOPBP1-203ENST00000503464 WDR62O43379 1518 aa11.45□□□□□ -0.58
TOPBP1-203ENST00000503464 FAM9AQ8IZU1 332 aaPredicted RBP11.45□□□□□ -0.58
TOPBP1-203ENST00000503464 EEA1Q15075 1411 aa11.43□□□□□ -0.58
TOPBP1-203ENST00000503464 ADRA2BP18089 450 aa11.43□□□□□ -0.58
TOPBP1-203ENST00000503464 ERCC6Q03468 1493 aa11.42□□□□□ -0.58
TOPBP1-203ENST00000503464 RAD54L2Q9Y4B4 1467 aa11.42□□□□□ -0.58
TOPBP1-203ENST00000503464 TARBP1Q13395 1621 aaKnown RBP11.42□□□□□ -0.58
TOPBP1-203ENST00000503464 ABCA10Q8WWZ4 1543 aa11.4□□□□□ -0.58
TOPBP1-203ENST00000503464 LOC105371045A0A1W2PR82 267 aa11.4□□□□□ -0.58
TOPBP1-203ENST00000503464 CUX2O14529 1486 aa11.39□□□□□ -0.59
TOPBP1-203ENST00000503464 KIF21BO75037 1637 aa11.38□□□□□ -0.59
TOPBP1-203ENST00000503464 ABCA5Q8WWZ7 1642 aa11.38□□□□□ -0.59
TOPBP1-203ENST00000503464 KIF27Q86VH2 1401 aa11.36□□□□□ -0.59
TOPBP1-203ENST00000503464 CSRNP3Q8WYN3 585 aa11.35□□□□□ -0.59
TOPBP1-203ENST00000503464 PRXQ9BXM0 1461 aa11.32□□□□□ -0.6
TOPBP1-203ENST00000503464 PBRM1Q86U86 1689 aa11.31□□□□□ -0.6
TOPBP1-203ENST00000503464 RAPGEF2Q9Y4G8 1499 aa11.31□□□□□ -0.6
TOPBP1-203ENST00000503464 PLPPR3Q6T4P5 718 aa11.3□□□□□ -0.6
TOPBP1-203ENST00000503464 GOLGA3Q08378 1498 aa11.3□□□□□ -0.6
TOPBP1-203ENST00000503464 IFT140Q96RY7 1462 aa11.3□□□□□ -0.6
TOPBP1-203ENST00000503464 ERICH3Q5RHP9 1530 aa11.3□□□□□ -0.6
TOPBP1-203ENST00000503464 IGF1RP08069 1367 aa11.29□□□□□ -0.6
TOPBP1-203ENST00000503464 ZNF608Q9ULD9 1512 aaPredicted RBP11.29□□□□□ -0.6
TOPBP1-203ENST00000503464 EHMT2Q96KQ7 1210 aa11.28□□□□□ -0.6
TOPBP1-203ENST00000503464 EIF4G3O43432 1585 aaKnown RBP11.28□□□□□ -0.6
TOPBP1-203ENST00000503464 TDRD9Q8NDG6 1382 aaKnown RBP11.28□□□□□ -0.6
TOPBP1-203ENST00000503464 CUL7Q14999 1698 aa11.27□□□□□ -0.6
TOPBP1-203ENST00000503464 GAPVD1Q14C86 1478 aa11.26□□□□□ -0.61
TOPBP1-203ENST00000503464 AQRO60306 1485 aaKnown RBP eCLIP11.24□□□□□ -0.61
TOPBP1-203ENST00000503464 TNIKQ9UKE5 1360 aa11.23□□□□□ -0.61
TOPBP1-203ENST00000503464 ADAMTS12P58397 1594 aa11.22□□□□□ -0.61
TOPBP1-203ENST00000503464 CARMIL1Q5VZK9 1371 aa11.21□□□□□ -0.61
TOPBP1-203ENST00000503464 GRIN2BQ13224 1484 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms