RNA–Protein interactions for RNA: ENST00000503282.1

UBE2D3-214, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-214ENST00000503282 NISCHQ9Y2I1 1504 aa53.16■■■■■ 6.1
UBE2D3-214ENST00000503282 CCDC180Q9P1Z9 1646 aa47.22■■■■■ 5.15
UBE2D3-214ENST00000503282 ABCC9O60706 1549 aa46.27■■■■■ 5
UBE2D3-214ENST00000503282 DCAF8L2P0C7V8 631 aa44.6■■■■■ 4.73
UBE2D3-214ENST00000503282 RB1CC1Q8TDY2 1594 aa44.49■■■■■ 4.71
UBE2D3-214ENST00000503282 NACADO15069 1562 aa44.43■■■■■ 4.7
UBE2D3-214ENST00000503282 ZCCHC6Q5VYS8 1495 aaKnown RBP44.24■■■■■ 4.67
UBE2D3-214ENST00000503282 MYO15BQ96JP2 1530 aa44.14■■■■■ 4.66
UBE2D3-214ENST00000503282 DCAF1Q9Y4B6 1507 aa43.96■■■■■ 4.63
UBE2D3-214ENST00000503282 UNC13AQ9UPW8 1703 aa43.42■■■■■ 4.54
UBE2D3-214ENST00000503282 PABPN1Q86U42 306 aaKnown RBP eCLIP43.29■■■■■ 4.52
UBE2D3-214ENST00000503282 SCRIBQ14160 1630 aa43.12■■■■■ 4.49
UBE2D3-214ENST00000503282 BICRAQ9NZM4 1560 aa43.09■■■■■ 4.49
UBE2D3-214ENST00000503282 SHROOM4Q9ULL8 1493 aa42.65■■■■■ 4.42
UBE2D3-214ENST00000503282 DNAJC5BQ9UF47 199 aa42.47■■■■■ 4.39
UBE2D3-214ENST00000503282 EIF4G1Q04637 1599 aaKnown RBP41.99■■■■■ 4.31
UBE2D3-214ENST00000503282 CC2D2AQ9P2K1 1620 aa41.83■■■■■ 4.29
UBE2D3-214ENST00000503282 CECR2Q9BXF3 1484 aa41.57■■■■■ 4.25
UBE2D3-214ENST00000503282 SMARCA4P51532 1647 aa41.23■■■■■ 4.19
UBE2D3-214ENST00000503282 BAZ1AQ9NRL2 1556 aaPredicted RBP41.21■■■■■ 4.19
UBE2D3-214ENST00000503282 ATAD2BQ9ULI0 1458 aa41.02■■■■■ 4.16
UBE2D3-214ENST00000503282 NCAPD3P42695 1498 aa41.01■■■■■ 4.16
UBE2D3-214ENST00000503282 SMARCA2P51531 1590 aa40.99■■■■■ 4.15
UBE2D3-214ENST00000503282 MROH2BQ7Z745 1585 aa40.96■■■■■ 4.15
UBE2D3-214ENST00000503282 PEG3Q9GZU2 1588 aa40.8■■■■■ 4.12
UBE2D3-214ENST00000503282 HMGXB3Q12766 1538 aa40.77■■■■■ 4.12
UBE2D3-214ENST00000503282 BAZ1BQ9UIG0 1483 aaKnown RBP40.7■■■■■ 4.11
UBE2D3-214ENST00000503282 WIZO95785 1651 aa40.53■■■■■ 4.08
UBE2D3-214ENST00000503282 RSF1Q96T23 1441 aaPredicted RBP40.51■■■■■ 4.08
UBE2D3-214ENST00000503282 TOP2AP11388 1531 aaKnown RBP40.08■■■■■ 4.01
UBE2D3-214ENST00000503282 NESP48681 1621 aa40.02■■■■■ 4
UBE2D3-214ENST00000503282 LAMC3Q9Y6N6 1575 aa39.92■■■■□ 3.98
UBE2D3-214ENST00000503282 ERCC6Q03468 1493 aa39.91■■■■□ 3.98
UBE2D3-214ENST00000503282 CADPSQ9ULU8 1353 aa39.84■■■■□ 3.97
UBE2D3-214ENST00000503282 PDS5BQ9NTI5 1447 aa39.71■■■■□ 3.95
UBE2D3-214ENST00000503282 CCDC88BA6NC98 1476 aa39.65■■■■□ 3.94
UBE2D3-214ENST00000503282 SUPT5HO00267 1087 aaKnown RBP39.62■■■■□ 3.93
UBE2D3-214ENST00000503282 CFTRP13569 1480 aa39.57■■■■□ 3.93
UBE2D3-214ENST00000503282 KIF21AQ7Z4S6 1674 aa39.52■■■■□ 3.92
UBE2D3-214ENST00000503282 CUX2O14529 1486 aa39.43■■■■□ 3.9
UBE2D3-214ENST00000503282 FANCD2Q9BXW9 1451 aa39.37■■■■□ 3.89
UBE2D3-214ENST00000503282 THOC2Q8NI27 1593 aaKnown RBP39.36■■■■□ 3.89
UBE2D3-214ENST00000503282 CEP164Q9UPV0 1460 aa39.32■■■■□ 3.89
UBE2D3-214ENST00000503282 MRC2Q9UBG0 1479 aa39.24■■■■□ 3.87
UBE2D3-214ENST00000503282 PRDM2Q13029 1718 aa39.23■■■■□ 3.87
UBE2D3-214ENST00000503282 WDR62O43379 1518 aa39.09■■■■□ 3.85
UBE2D3-214ENST00000503282 URB2Q14146 1524 aaKnown RBP38.94■■■■□ 3.82
UBE2D3-214ENST00000503282 ABCC8Q09428 1581 aa38.76■■■■□ 3.8
UBE2D3-214ENST00000503282 TOPBP1Q92547 1522 aa38.72■■■■□ 3.79
UBE2D3-214ENST00000503282 DNMBPQ6XZF7 1577 aa38.67■■■■□ 3.78
UBE2D3-214ENST00000503282 IFT140Q96RY7 1462 aa38.49■■■■□ 3.75
UBE2D3-214ENST00000503282 CUX1P39880 1505 aa38.42■■■■□ 3.74
UBE2D3-214ENST00000503282 POLA1P09884 1462 aaPredicted RBP38.39■■■■□ 3.74
UBE2D3-214ENST00000503282 FGD5Q6ZNL6 1462 aa38.31■■■■□ 3.72
UBE2D3-214ENST00000503282 ZNF608Q9ULD9 1512 aaPredicted RBP38.3■■■■□ 3.72
UBE2D3-214ENST00000503282 SOGA1O94964 1423 aa38.29■■■■□ 3.72
UBE2D3-214ENST00000503282 DNAJC5Q9H3Z4 198 aa38.28■■■■□ 3.72
UBE2D3-214ENST00000503282 TARBP1Q13395 1621 aaKnown RBP38.27■■■■□ 3.72
UBE2D3-214ENST00000503282 RAD54L2Q9Y4B4 1467 aa38.25■■■■□ 3.71
UBE2D3-214ENST00000503282 WRNQ14191 1432 aaPredicted RBP eCLIP38.22■■■■□ 3.71
UBE2D3-214ENST00000503282 AQRO60306 1485 aaKnown RBP eCLIP38.13■■■■□ 3.692e-7■■■■■ 32
UBE2D3-214ENST00000503282 EIF4G3O43432 1585 aaKnown RBP38.13■■■■□ 3.69
UBE2D3-214ENST00000503282 TOP2BQ02880 1626 aa38.1■■■■□ 3.69
UBE2D3-214ENST00000503282 TDRD9Q8NDG6 1382 aaKnown RBP38.08■■■■□ 3.69
UBE2D3-214ENST00000503282 BIVM-ERCC5R4GMW8 1640 aa38.08■■■■□ 3.69
UBE2D3-214ENST00000503282 SYNJ1O43426 1573 aa38.07■■■■□ 3.69
UBE2D3-214ENST00000503282 WDR97A6NE52 1622 aa37.98■■■■□ 3.67
UBE2D3-214ENST00000503282 ABCA10Q8WWZ4 1543 aa37.93■■■■□ 3.66
UBE2D3-214ENST00000503282 OSCARQ8IYS5 282 aa37.91■■■■□ 3.66
UBE2D3-214ENST00000503282 GAPVD1Q14C86 1478 aa37.84■■■■□ 3.65
UBE2D3-214ENST00000503282 GRIN2BQ13224 1484 aa37.82■■■■□ 3.64
UBE2D3-214ENST00000503282 FBLN2P98095 1184 aa37.77■■■■□ 3.64
UBE2D3-214ENST00000503282 SNAPC4Q5SXM2 1469 aa37.75■■■■□ 3.63
UBE2D3-214ENST00000503282 ABCA5Q8WWZ7 1642 aa37.75■■■■□ 3.63
UBE2D3-214ENST00000503282 MAGI1Q96QZ7 1491 aaPredicted RBP37.7■■■■□ 3.63
UBE2D3-214ENST00000503282 PBRM1Q86U86 1689 aa37.69■■■■□ 3.62
UBE2D3-214ENST00000503282 CHD1O14646 1710 aa37.65■■■■□ 3.62
UBE2D3-214ENST00000503282 CHMP7Q8WUX9 453 aaPredicted RBP37.65■■■■□ 3.62
UBE2D3-214ENST00000503282 SYNJ2O15056 1496 aa37.56■■■■□ 3.6
UBE2D3-214ENST00000503282 ERICH3Q5RHP9 1530 aa37.49■■■■□ 3.59
UBE2D3-214ENST00000503282 KIF27Q86VH2 1401 aa37.44■■■■□ 3.58
UBE2D3-214ENST00000503282 TRIM41Q8WV44 630 aa37.43■■■■□ 3.58
UBE2D3-214ENST00000503282 FHAD1B1AJZ9 1412 aa37.39■■■■□ 3.58
UBE2D3-214ENST00000503282 ADAMTS12P58397 1594 aa37.38■■■■□ 3.58
UBE2D3-214ENST00000503282 GRIN2AQ12879 1464 aa37.31■■■■□ 3.56
UBE2D3-214ENST00000503282 IGF1RP08069 1367 aa37.29■■■■□ 3.56
UBE2D3-214ENST00000503282 CLASP1Q7Z460 1538 aa37.23■■■■□ 3.55
UBE2D3-214ENST00000503282 ARHGEF11O15085 1522 aa37.19■■■■□ 3.54
UBE2D3-214ENST00000503282 RIMBP3CA6NJZ7 1639 aa37.18■■■■□ 3.54
UBE2D3-214ENST00000503282 RIMBP3BA6NNM3 1639 aa37.18■■■■□ 3.54
UBE2D3-214ENST00000503282 RIMBP3Q9UFD9 1639 aa37.18■■■■□ 3.54
UBE2D3-214ENST00000503282 CUL7Q14999 1698 aa37.14■■■■□ 3.54
UBE2D3-214ENST00000503282 NUP160Q12769 1436 aa37.13■■■■□ 3.53
UBE2D3-214ENST00000503282 CEP170Q5SW79 1584 aa37.1■■■■□ 3.53
UBE2D3-214ENST00000503282 CARMIL1Q5VZK9 1371 aa37.08■■■■□ 3.53
UBE2D3-214ENST00000503282 RUSC2Q8N2Y8 1516 aa37.08■■■■□ 3.53
UBE2D3-214ENST00000503282 CYB5RLQ6IPT4 315 aa36.95■■■■□ 3.51
UBE2D3-214ENST00000503282 CHIC1Q5VXU3 224 aa36.93■■■■□ 3.5
UBE2D3-214ENST00000503282 ARAP1Q96P48 1450 aa36.88■■■■□ 3.49
UBE2D3-214ENST00000503282 JPH4Q96JJ6 628 aa36.86■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms