RNA–Protein interactions for RNA: ENST00000503215.5

SCLT1-204, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,364 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-204ENST00000503215 NISCHQ9Y2I1 1504 aa40.38■■■■■ 4.06
SCLT1-204ENST00000503215 CCDC180Q9P1Z9 1646 aa35.99■■■■□ 3.35
SCLT1-204ENST00000503215 ABCC9O60706 1549 aa35.94■■■■□ 3.34
SCLT1-204ENST00000503215 RB1CC1Q8TDY2 1594 aa34.18■■■■□ 3.06
SCLT1-204ENST00000503215 DCAF8L2P0C7V8 631 aa34.11■■■■□ 3.05
SCLT1-204ENST00000503215 NACADO15069 1562 aa34.02■■■■□ 3.04
SCLT1-204ENST00000503215 DNAJC5BQ9UF47 199 aa33.62■■■□□ 2.97
SCLT1-204ENST00000503215 MYO15BQ96JP2 1530 aa33.6■■■□□ 2.97
SCLT1-204ENST00000503215 PABPN1Q86U42 306 aaKnown RBP eCLIP33.59■■■□□ 2.97
SCLT1-204ENST00000503215 ZCCHC6Q5VYS8 1495 aaKnown RBP33.5■■■□□ 2.95
SCLT1-204ENST00000503215 UNC13AQ9UPW8 1703 aa33.43■■■□□ 2.94
SCLT1-204ENST00000503215 DCAF1Q9Y4B6 1507 aa33.29■■■□□ 2.92
SCLT1-204ENST00000503215 BICRAQ9NZM4 1560 aa33.28■■■□□ 2.92
SCLT1-204ENST00000503215 SCRIBQ14160 1630 aa32.95■■■□□ 2.87
SCLT1-204ENST00000503215 SHROOM4Q9ULL8 1493 aa32.68■■■□□ 2.82
SCLT1-204ENST00000503215 CC2D2AQ9P2K1 1620 aa32.42■■■□□ 2.78
SCLT1-204ENST00000503215 EIF4G1Q04637 1599 aaKnown RBP32.4■■■□□ 2.78
SCLT1-204ENST00000503215 CECR2Q9BXF3 1484 aa32.3■■■□□ 2.76
SCLT1-204ENST00000503215 NCAPD3P42695 1498 aa31.47■■■□□ 2.63
SCLT1-204ENST00000503215 ATAD2BQ9ULI0 1458 aa31.44■■■□□ 2.62
SCLT1-204ENST00000503215 SMARCA4P51532 1647 aa31.42■■■□□ 2.62
SCLT1-204ENST00000503215 SMARCA2P51531 1590 aa31.27■■■□□ 2.6
SCLT1-204ENST00000503215 BAZ1AQ9NRL2 1556 aaPredicted RBP31.26■■■□□ 2.6
SCLT1-204ENST00000503215 HMGXB3Q12766 1538 aa31.19■■■□□ 2.58
SCLT1-204ENST00000503215 MROH2BQ7Z745 1585 aa31.17■■■□□ 2.58
SCLT1-204ENST00000503215 BAZ1BQ9UIG0 1483 aaKnown RBP31.1■■■□□ 2.57
SCLT1-204ENST00000503215 PEG3Q9GZU2 1588 aa31.07■■■□□ 2.56
SCLT1-204ENST00000503215 NESP48681 1621 aa30.98■■■□□ 2.55
SCLT1-204ENST00000503215 ERCC6Q03468 1493 aa30.93■■■□□ 2.54
SCLT1-204ENST00000503215 WIZO95785 1651 aa30.78■■■□□ 2.52
SCLT1-204ENST00000503215 CUX2O14529 1486 aa30.75■■■□□ 2.51
SCLT1-204ENST00000503215 LAMC3Q9Y6N6 1575 aa30.64■■■□□ 2.5
SCLT1-204ENST00000503215 RSF1Q96T23 1441 aaPredicted RBP30.63■■■□□ 2.49
SCLT1-204ENST00000503215 DNAJC5Q9H3Z4 198 aa30.57■■■□□ 2.48
SCLT1-204ENST00000503215 CADPSQ9ULU8 1353 aa30.55■■■□□ 2.48
SCLT1-204ENST00000503215 PDS5BQ9NTI5 1447 aa30.5■■■□□ 2.47
SCLT1-204ENST00000503215 THOC2Q8NI27 1593 aaKnown RBP30.49■■■□□ 2.47
SCLT1-204ENST00000503215 KIF21AQ7Z4S6 1674 aa30.47■■■□□ 2.47
SCLT1-204ENST00000503215 TOP2AP11388 1531 aaKnown RBP30.36■■■□□ 2.45
SCLT1-204ENST00000503215 CFTRP13569 1480 aa30.23■■■□□ 2.43
SCLT1-204ENST00000503215 MRC2Q9UBG0 1479 aa30.23■■■□□ 2.43
SCLT1-204ENST00000503215 FANCD2Q9BXW9 1451 aa30.19■■■□□ 2.42
SCLT1-204ENST00000503215 CEP164Q9UPV0 1460 aa30.15■■■□□ 2.42
SCLT1-204ENST00000503215 WDR62O43379 1518 aa30.13■■■□□ 2.41
SCLT1-204ENST00000503215 CCDC88BA6NC98 1476 aa30.09■■■□□ 2.41
SCLT1-204ENST00000503215 URB2Q14146 1524 aaKnown RBP29.96■■■□□ 2.39
SCLT1-204ENST00000503215 PRDM2Q13029 1718 aa29.81■■■□□ 2.36
SCLT1-204ENST00000503215 TOPBP1Q92547 1522 aa29.65■■■□□ 2.34
SCLT1-204ENST00000503215 ZNF608Q9ULD9 1512 aaPredicted RBP29.58■■■□□ 2.33
SCLT1-204ENST00000503215 IFT140Q96RY7 1462 aa29.54■■■□□ 2.32
SCLT1-204ENST00000503215 SUPT5HO00267 1087 aaKnown RBP29.54■■■□□ 2.32
SCLT1-204ENST00000503215 ABCC8Q09428 1581 aa29.51■■■□□ 2.31
SCLT1-204ENST00000503215 DNMBPQ6XZF7 1577 aa29.51■■■□□ 2.31
SCLT1-204ENST00000503215 OSCARQ8IYS5 282 aa29.49■■■□□ 2.31
SCLT1-204ENST00000503215 TRIM41Q8WV44 630 aa29.39■■■□□ 2.29
SCLT1-204ENST00000503215 POLA1P09884 1462 aaPredicted RBP29.36■■■□□ 2.29
SCLT1-204ENST00000503215 AQRO60306 1485 aaKnown RBP eCLIP29.34■■■□□ 2.29
SCLT1-204ENST00000503215 TARBP1Q13395 1621 aaKnown RBP29.34■■■□□ 2.29
SCLT1-204ENST00000503215 RAD54L2Q9Y4B4 1467 aa29.32■■■□□ 2.28
SCLT1-204ENST00000503215 EIF4G3O43432 1585 aaKnown RBP29.31■■■□□ 2.28
SCLT1-204ENST00000503215 CUX1P39880 1505 aa29.26■■■□□ 2.27
SCLT1-204ENST00000503215 SOGA1O94964 1423 aa29.25■■■□□ 2.27
SCLT1-204ENST00000503215 FGD5Q6ZNL6 1462 aa29.22■■■□□ 2.27
SCLT1-204ENST00000503215 TDRD9Q8NDG6 1382 aaKnown RBP29.22■■■□□ 2.27
SCLT1-204ENST00000503215 FBLN2P98095 1184 aa29.11■■■□□ 2.25
SCLT1-204ENST00000503215 CHD1O14646 1710 aa29.05■■■□□ 2.24
SCLT1-204ENST00000503215 RIMBP3CA6NJZ7 1639 aa29.03■■■□□ 2.24
SCLT1-204ENST00000503215 RIMBP3BA6NNM3 1639 aa29.03■■■□□ 2.24
SCLT1-204ENST00000503215 RIMBP3Q9UFD9 1639 aa29.03■■■□□ 2.24
SCLT1-204ENST00000503215 SNAPC4Q5SXM2 1469 aa29■■■□□ 2.23
SCLT1-204ENST00000503215 ARHGEF11O15085 1522 aa28.97■■■□□ 2.23
SCLT1-204ENST00000503215 WDR97A6NE52 1622 aa28.93■■■□□ 2.22
SCLT1-204ENST00000503215 GRIN2BQ13224 1484 aa28.92■■■□□ 2.22
SCLT1-204ENST00000503215 CHMP7Q8WUX9 453 aaPredicted RBP28.89■■■□□ 2.22
SCLT1-204ENST00000503215 GAPVD1Q14C86 1478 aa28.88■■■□□ 2.21
SCLT1-204ENST00000503215 ABCA10Q8WWZ4 1543 aa28.88■■■□□ 2.21
SCLT1-204ENST00000503215 MAGI1Q96QZ7 1491 aaPredicted RBP28.86■■■□□ 2.21
SCLT1-204ENST00000503215 WRNQ14191 1432 aaPredicted RBP eCLIP28.84■■■□□ 2.21
SCLT1-204ENST00000503215 CYB5RLQ6IPT4 315 aa28.84■■■□□ 2.21
SCLT1-204ENST00000503215 SYNJ1O43426 1573 aa28.82■■■□□ 2.2
SCLT1-204ENST00000503215 SYNJ2O15056 1496 aa28.79■■■□□ 2.2
SCLT1-204ENST00000503215 TOP2BQ02880 1626 aa28.78■■■□□ 2.2
SCLT1-204ENST00000503215 ABCA5Q8WWZ7 1642 aa28.78■■■□□ 2.2
SCLT1-204ENST00000503215 PBRM1Q86U86 1689 aa28.77■■■□□ 2.2
SCLT1-204ENST00000503215 BIVM-ERCC5R4GMW8 1640 aa28.76■■■□□ 2.19
SCLT1-204ENST00000503215 ARAP1Q96P48 1450 aa28.74■■■□□ 2.19
SCLT1-204ENST00000503215 CLASP1Q7Z460 1538 aa28.74■■■□□ 2.19
SCLT1-204ENST00000503215 GRIN2AQ12879 1464 aa28.56■■■□□ 2.16
SCLT1-204ENST00000503215 ADAMTS12P58397 1594 aa28.55■■■□□ 2.16
SCLT1-204ENST00000503215 FHAD1B1AJZ9 1412 aa28.51■■■□□ 2.15
SCLT1-204ENST00000503215 ERICH3Q5RHP9 1530 aa28.48■■■□□ 2.15
SCLT1-204ENST00000503215 NUP160Q12769 1436 aa28.47■■■□□ 2.15
SCLT1-204ENST00000503215 CEP170Q5SW79 1584 aa28.46■■■□□ 2.15
SCLT1-204ENST00000503215 ERCC6L2Q5T890 1561 aa28.41■■■□□ 2.14
SCLT1-204ENST00000503215 TRHP20396 242 aaPredicted RBP28.4■■■□□ 2.14
SCLT1-204ENST00000503215 IGF1RP08069 1367 aa28.31■■■□□ 2.12
SCLT1-204ENST00000503215 SHROOM2Q13796 1616 aa28.27■■■□□ 2.12
SCLT1-204ENST00000503215 KIF27Q86VH2 1401 aa28.26■■■□□ 2.11
SCLT1-204ENST00000503215 JPH4Q96JJ6 628 aa28.24■■■□□ 2.11
SCLT1-204ENST00000503215 PRG4Q92954 1404 aaPredicted RBP28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms