RNA–Protein interactions for RNA: ENST00000498136.5

ABCF3-218, Transcript of ATP binding cassette subfamily F member 3, humanhuman

TSL 2

Gene ABCF3, Length 1,014 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF3-218ENST00000498136 NISCHQ9Y2I1 1504 aa40.62■■■■■ 4.09
ABCF3-218ENST00000498136 CCDC180Q9P1Z9 1646 aa36.19■■■■□ 3.38
ABCF3-218ENST00000498136 ABCC9O60706 1549 aa35.54■■■■□ 3.28
ABCF3-218ENST00000498136 RB1CC1Q8TDY2 1594 aa34.13■■■■□ 3.05
ABCF3-218ENST00000498136 DCAF8L2P0C7V8 631 aa34.12■■■■□ 3.05
ABCF3-218ENST00000498136 NACADO15069 1562 aa34.02■■■■□ 3.04
ABCF3-218ENST00000498136 ZCCHC6Q5VYS8 1495 aaKnown RBP33.81■■■■□ 3
ABCF3-218ENST00000498136 MYO15BQ96JP2 1530 aa33.72■■■□□ 2.99
ABCF3-218ENST00000498136 DCAF1Q9Y4B6 1507 aa33.56■■■□□ 2.96
ABCF3-218ENST00000498136 UNC13AQ9UPW8 1703 aa33.39■■■□□ 2.94
ABCF3-218ENST00000498136 PABPN1Q86U42 306 aaKnown RBP eCLIP33.19■■■□□ 2.9
ABCF3-218ENST00000498136 SCRIBQ14160 1630 aa33.06■■■□□ 2.88
ABCF3-218ENST00000498136 BICRAQ9NZM4 1560 aa33.04■■■□□ 2.88
ABCF3-218ENST00000498136 SHROOM4Q9ULL8 1493 aa32.67■■■□□ 2.82
ABCF3-218ENST00000498136 DNAJC5BQ9UF47 199 aa32.63■■■□□ 2.81
ABCF3-218ENST00000498136 EIF4G1Q04637 1599 aaKnown RBP32.22■■■□□ 2.75
ABCF3-218ENST00000498136 CC2D2AQ9P2K1 1620 aa32.13■■■□□ 2.73
ABCF3-218ENST00000498136 CECR2Q9BXF3 1484 aa31.92■■■□□ 2.7
ABCF3-218ENST00000498136 SMARCA4P51532 1647 aa31.57■■■□□ 2.64
ABCF3-218ENST00000498136 BAZ1AQ9NRL2 1556 aaPredicted RBP31.51■■■□□ 2.64
ABCF3-218ENST00000498136 ATAD2BQ9ULI0 1458 aa31.39■■■□□ 2.62
ABCF3-218ENST00000498136 SMARCA2P51531 1590 aa31.38■■■□□ 2.61
ABCF3-218ENST00000498136 NCAPD3P42695 1498 aa31.36■■■□□ 2.61
ABCF3-218ENST00000498136 MROH2BQ7Z745 1585 aa31.32■■■□□ 2.6
ABCF3-218ENST00000498136 HMGXB3Q12766 1538 aa31.24■■■□□ 2.59
ABCF3-218ENST00000498136 PEG3Q9GZU2 1588 aa31.21■■■□□ 2.59
ABCF3-218ENST00000498136 BAZ1BQ9UIG0 1483 aaKnown RBP31.18■■■□□ 2.58
ABCF3-218ENST00000498136 WIZO95785 1651 aa31.03■■■□□ 2.56
ABCF3-218ENST00000498136 RSF1Q96T23 1441 aaPredicted RBP30.9■■■□□ 2.54
ABCF3-218ENST00000498136 NESP48681 1621 aa30.71■■■□□ 2.51
ABCF3-218ENST00000498136 ERCC6Q03468 1493 aa30.68■■■□□ 2.5
ABCF3-218ENST00000498136 TOP2AP11388 1531 aaKnown RBP30.65■■■□□ 2.5
ABCF3-218ENST00000498136 LAMC3Q9Y6N6 1575 aa30.61■■■□□ 2.49
ABCF3-218ENST00000498136 CADPSQ9ULU8 1353 aa30.47■■■□□ 2.47
ABCF3-218ENST00000498136 PDS5BQ9NTI5 1447 aa30.4■■■□□ 2.46
ABCF3-218ENST00000498136 KIF21AQ7Z4S6 1674 aa30.39■■■□□ 2.45
ABCF3-218ENST00000498136 CUX2O14529 1486 aa30.31■■■□□ 2.44
ABCF3-218ENST00000498136 CCDC88BA6NC98 1476 aa30.28■■■□□ 2.44
ABCF3-218ENST00000498136 THOC2Q8NI27 1593 aaKnown RBP30.26■■■□□ 2.43
ABCF3-218ENST00000498136 CFTRP13569 1480 aa30.25■■■□□ 2.43
ABCF3-218ENST00000498136 SUPT5HO00267 1087 aaKnown RBP30.16■■■□□ 2.42
ABCF3-218ENST00000498136 FANCD2Q9BXW9 1451 aa30.16■■■□□ 2.42
ABCF3-218ENST00000498136 CEP164Q9UPV0 1460 aa30.15■■■□□ 2.42
ABCF3-218ENST00000498136 PRDM2Q13029 1718 aa30.12■■■□□ 2.41
ABCF3-218ENST00000498136 MRC2Q9UBG0 1479 aa30.11■■■□□ 2.41
ABCF3-218ENST00000498136 WDR62O43379 1518 aa29.98■■■□□ 2.39
ABCF3-218ENST00000498136 URB2Q14146 1524 aaKnown RBP29.84■■■□□ 2.37
ABCF3-218ENST00000498136 TOPBP1Q92547 1522 aa29.66■■■□□ 2.34
ABCF3-218ENST00000498136 ABCC8Q09428 1581 aa29.64■■■□□ 2.33
ABCF3-218ENST00000498136 DNMBPQ6XZF7 1577 aa29.62■■■□□ 2.33
ABCF3-218ENST00000498136 IFT140Q96RY7 1462 aa29.48■■■□□ 2.31
ABCF3-218ENST00000498136 DNAJC5Q9H3Z4 198 aa29.48■■■□□ 2.31
ABCF3-218ENST00000498136 POLA1P09884 1462 aaPredicted RBP29.4■■■□□ 2.3
ABCF3-218ENST00000498136 CUX1P39880 1505 aa29.39■■■□□ 2.3
ABCF3-218ENST00000498136 ZNF608Q9ULD9 1512 aaPredicted RBP29.36■■■□□ 2.29
ABCF3-218ENST00000498136 TARBP1Q13395 1621 aaKnown RBP29.34■■■□□ 2.29
ABCF3-218ENST00000498136 FGD5Q6ZNL6 1462 aa29.32■■■□□ 2.28
ABCF3-218ENST00000498136 SOGA1O94964 1423 aa29.28■■■□□ 2.28
ABCF3-218ENST00000498136 EIF4G3O43432 1585 aaKnown RBP29.28■■■□□ 2.28
ABCF3-218ENST00000498136 RAD54L2Q9Y4B4 1467 aa29.28■■■□□ 2.28
ABCF3-218ENST00000498136 AQRO60306 1485 aaKnown RBP eCLIP29.2■■■□□ 2.263e-8■■■■■ 28.1
ABCF3-218ENST00000498136 WRNQ14191 1432 aaPredicted RBP eCLIP29.18■■■□□ 2.26
ABCF3-218ENST00000498136 TDRD9Q8NDG6 1382 aaKnown RBP29.13■■■□□ 2.25
ABCF3-218ENST00000498136 BIVM-ERCC5R4GMW8 1640 aa29.12■■■□□ 2.25
ABCF3-218ENST00000498136 SYNJ1O43426 1573 aa29.12■■■□□ 2.25
ABCF3-218ENST00000498136 TOP2BQ02880 1626 aa29.12■■■□□ 2.25
ABCF3-218ENST00000498136 WDR97A6NE52 1622 aa29.09■■■□□ 2.25
ABCF3-218ENST00000498136 OSCARQ8IYS5 282 aa29.06■■■□□ 2.24
ABCF3-218ENST00000498136 ABCA10Q8WWZ4 1543 aa29■■■□□ 2.23
ABCF3-218ENST00000498136 CHD1O14646 1710 aa28.97■■■□□ 2.23
ABCF3-218ENST00000498136 FBLN2P98095 1184 aa28.95■■■□□ 2.22
ABCF3-218ENST00000498136 GRIN2BQ13224 1484 aa28.95■■■□□ 2.22
ABCF3-218ENST00000498136 GAPVD1Q14C86 1478 aa28.95■■■□□ 2.22
ABCF3-218ENST00000498136 PBRM1Q86U86 1689 aa28.95■■■□□ 2.22
ABCF3-218ENST00000498136 SNAPC4Q5SXM2 1469 aa28.94■■■□□ 2.22
ABCF3-218ENST00000498136 ABCA5Q8WWZ7 1642 aa28.91■■■□□ 2.22
ABCF3-218ENST00000498136 MAGI1Q96QZ7 1491 aaPredicted RBP28.87■■■□□ 2.21
ABCF3-218ENST00000498136 CHMP7Q8WUX9 453 aaPredicted RBP28.81■■■□□ 2.2
ABCF3-218ENST00000498136 SYNJ2O15056 1496 aa28.77■■■□□ 2.2
ABCF3-218ENST00000498136 ERICH3Q5RHP9 1530 aa28.67■■■□□ 2.18
ABCF3-218ENST00000498136 ADAMTS12P58397 1594 aa28.66■■■□□ 2.18
ABCF3-218ENST00000498136 RIMBP3CA6NJZ7 1639 aa28.63■■■□□ 2.17
ABCF3-218ENST00000498136 RIMBP3BA6NNM3 1639 aa28.63■■■□□ 2.17
ABCF3-218ENST00000498136 RIMBP3Q9UFD9 1639 aa28.63■■■□□ 2.17
ABCF3-218ENST00000498136 TRIM41Q8WV44 630 aa28.6■■■□□ 2.17
ABCF3-218ENST00000498136 ARHGEF11O15085 1522 aa28.59■■■□□ 2.17
ABCF3-218ENST00000498136 FHAD1B1AJZ9 1412 aa28.59■■■□□ 2.17
ABCF3-218ENST00000498136 KIF27Q86VH2 1401 aa28.57■■■□□ 2.16
ABCF3-218ENST00000498136 GRIN2AQ12879 1464 aa28.57■■■□□ 2.16
ABCF3-218ENST00000498136 CLASP1Q7Z460 1538 aa28.57■■■□□ 2.16
ABCF3-218ENST00000498136 CEP170Q5SW79 1584 aa28.45■■■□□ 2.14
ABCF3-218ENST00000498136 CUL7Q14999 1698 aa28.43■■■□□ 2.14
ABCF3-218ENST00000498136 IGF1RP08069 1367 aa28.43■■■□□ 2.14
ABCF3-218ENST00000498136 NUP160Q12769 1436 aa28.41■■■□□ 2.14
ABCF3-218ENST00000498136 CYB5RLQ6IPT4 315 aa28.36■■■□□ 2.13
ABCF3-218ENST00000498136 ARAP1Q96P48 1450 aa28.34■■■□□ 2.13
ABCF3-218ENST00000498136 CARMIL1Q5VZK9 1371 aa28.3■■■□□ 2.12
ABCF3-218ENST00000498136 RUSC2Q8N2Y8 1516 aa28.28■■■□□ 2.12
ABCF3-218ENST00000498136 SHROOM2Q13796 1616 aa28.23■■■□□ 2.11
ABCF3-218ENST00000498136 ERCC6L2Q5T890 1561 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms