RNA–Protein interactions for RNA: ENST00000498048.1

PDZRN3-212, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 5

Gene PDZRN3, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-212ENST00000498048 NISCHQ9Y2I1 1504 aa18.44■□□□□ 0.54
PDZRN3-212ENST00000498048 AEBP2Q6ZN18 517 aaPredicted RBP18.27■□□□□ 0.52
PDZRN3-212ENST00000498048 CHIC1Q5VXU3 224 aa17.97■□□□□ 0.47
PDZRN3-212ENST00000498048 CCDC180Q9P1Z9 1646 aa16.32■□□□□ 0.2
PDZRN3-212ENST00000498048 PHF23Q9BUL5 403 aaPredicted RBP15.81■□□□□ 0.12
PDZRN3-212ENST00000498048 ZCCHC6Q5VYS8 1495 aaKnown RBP15.55■□□□□ 0.08
PDZRN3-212ENST00000498048 SENP3Q9H4L4 574 aaPredicted RBP15.49■□□□□ 0.07
PDZRN3-212ENST00000498048 DCAF1Q9Y4B6 1507 aa15.28■□□□□ 0.04
PDZRN3-212ENST00000498048 ABCC9O60706 1549 aa15.13■□□□□ 0.01
PDZRN3-212ENST00000498048 MYO15BQ96JP2 1530 aa15.07■□□□□ 0
PDZRN3-212ENST00000498048 NACADO15069 1562 aa15.01□□□□□ -0.01
PDZRN3-212ENST00000498048 SHROOM4Q9ULL8 1493 aa14.97□□□□□ -0.01
PDZRN3-212ENST00000498048 DCAF8L2P0C7V8 631 aa14.95□□□□□ -0.02
PDZRN3-212ENST00000498048 RB1CC1Q8TDY2 1594 aa14.91□□□□□ -0.02
PDZRN3-212ENST00000498048 SCRIBQ14160 1630 aa14.91□□□□□ -0.02
PDZRN3-212ENST00000498048 UNC13AQ9UPW8 1703 aa14.85□□□□□ -0.03
PDZRN3-212ENST00000498048 PLPPR3Q6T4P5 718 aa14.66□□□□□ -0.06
PDZRN3-212ENST00000498048 BICRAQ9NZM4 1560 aa14.43□□□□□ -0.1
PDZRN3-212ENST00000498048 FOXD1Q16676 465 aa14.37□□□□□ -0.11
PDZRN3-212ENST00000498048 SUPT5HO00267 1087 aaKnown RBP14.31□□□□□ -0.12
PDZRN3-212ENST00000498048 BAZ1AQ9NRL2 1556 aaPredicted RBP14.3□□□□□ -0.12
PDZRN3-212ENST00000498048 SMARCA4P51532 1647 aa14.3□□□□□ -0.12
PDZRN3-212ENST00000498048 CECR2Q9BXF3 1484 aa14.25□□□□□ -0.13
PDZRN3-212ENST00000498048 WIZO95785 1651 aa14.24□□□□□ -0.13
PDZRN3-212ENST00000498048 MROH2BQ7Z745 1585 aa14.24□□□□□ -0.13
PDZRN3-212ENST00000498048 RSF1Q96T23 1441 aaPredicted RBP14.22□□□□□ -0.13
PDZRN3-212ENST00000498048 PABPN1Q86U42 306 aaKnown RBP eCLIP14.1□□□□□ -0.15
PDZRN3-212ENST00000498048 TOP2AP11388 1531 aaKnown RBP14.08□□□□□ -0.16
PDZRN3-212ENST00000498048 PEG3Q9GZU2 1588 aa14.07□□□□□ -0.16
PDZRN3-212ENST00000498048 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
PDZRN3-212ENST00000498048 SMARCA2P51531 1590 aa13.99□□□□□ -0.17
PDZRN3-212ENST00000498048 ADRA2BP18089 450 aa13.95□□□□□ -0.18
PDZRN3-212ENST00000498048 PPP6R1Q9UPN7 881 aa13.93□□□□□ -0.18
PDZRN3-212ENST00000498048 HMGXB3Q12766 1538 aa13.88□□□□□ -0.19
PDZRN3-212ENST00000498048 BAZ1BQ9UIG0 1483 aaKnown RBP13.87□□□□□ -0.19
PDZRN3-212ENST00000498048 ATAD2BQ9ULI0 1458 aa13.87□□□□□ -0.19
PDZRN3-212ENST00000498048 PRDM2Q13029 1718 aa13.84□□□□□ -0.19
PDZRN3-212ENST00000498048 CC2D2AQ9P2K1 1620 aa13.8□□□□□ -0.2
PDZRN3-212ENST00000498048 CCDC88BA6NC98 1476 aa13.79□□□□□ -0.2
PDZRN3-212ENST00000498048 NCAPD3P42695 1498 aa13.71□□□□□ -0.21
PDZRN3-212ENST00000498048 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
PDZRN3-212ENST00000498048 PIAS4Q8N2W9 510 aaPredicted RBP13.62□□□□□ -0.23
PDZRN3-212ENST00000498048 BIVM-ERCC5R4GMW8 1640 aa13.53□□□□□ -0.24
PDZRN3-212ENST00000498048 SYNJ1O43426 1573 aa13.51□□□□□ -0.25
PDZRN3-212ENST00000498048 TOP2BQ02880 1626 aa13.46□□□□□ -0.26
PDZRN3-212ENST00000498048 CFTRP13569 1480 aa13.45□□□□□ -0.26
PDZRN3-212ENST00000498048 TRIM41Q8WV44 630 aa13.45□□□□□ -0.26
PDZRN3-212ENST00000498048 WRNQ14191 1432 aaPredicted RBP eCLIP13.44□□□□□ -0.26
PDZRN3-212ENST00000498048 LAMC3Q9Y6N6 1575 aa13.41□□□□□ -0.26
PDZRN3-212ENST00000498048 KIF21AQ7Z4S6 1674 aa13.39□□□□□ -0.27
PDZRN3-212ENST00000498048 CUX1P39880 1505 aa13.35□□□□□ -0.27
PDZRN3-212ENST00000498048 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.27
PDZRN3-212ENST00000498048 NESP48681 1621 aa13.3□□□□□ -0.28
PDZRN3-212ENST00000498048 DNMBPQ6XZF7 1577 aa13.29□□□□□ -0.28
PDZRN3-212ENST00000498048 EEA1Q15075 1411 aa13.29□□□□□ -0.28
PDZRN3-212ENST00000498048 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
PDZRN3-212ENST00000498048 WDR97A6NE52 1622 aa13.26□□□□□ -0.29
PDZRN3-212ENST00000498048 KIF21BO75037 1637 aa13.26□□□□□ -0.29
PDZRN3-212ENST00000498048 CEP164Q9UPV0 1460 aa13.25□□□□□ -0.29
PDZRN3-212ENST00000498048 SOGA1O94964 1423 aa13.22□□□□□ -0.29
PDZRN3-212ENST00000498048 FAM9AQ8IZU1 332 aaPredicted RBP13.21□□□□□ -0.29
PDZRN3-212ENST00000498048 RUSC2Q8N2Y8 1516 aa13.19□□□□□ -0.3
PDZRN3-212ENST00000498048 FGD5Q6ZNL6 1462 aa13.19□□□□□ -0.3
PDZRN3-212ENST00000498048 MSH5O43196 834 aa13.18□□□□□ -0.3
PDZRN3-212ENST00000498048 TOPBP1Q92547 1522 aa13.18□□□□□ -0.3
PDZRN3-212ENST00000498048 PDS5BQ9NTI5 1447 aa13.15□□□□□ -0.3
PDZRN3-212ENST00000498048 GOLGA3Q08378 1498 aa13.15□□□□□ -0.3
PDZRN3-212ENST00000498048 URB2Q14146 1524 aaKnown RBP13.14□□□□□ -0.31
PDZRN3-212ENST00000498048 LOC105371045A0A1W2PR82 267 aa13.12□□□□□ -0.31
PDZRN3-212ENST00000498048 ERICH3Q5RHP9 1530 aa13.12□□□□□ -0.31
PDZRN3-212ENST00000498048 PBRM1Q86U86 1689 aa13.12□□□□□ -0.31
PDZRN3-212ENST00000498048 POLA1P09884 1462 aaPredicted RBP13.1□□□□□ -0.31
PDZRN3-212ENST00000498048 DNAJC5BQ9UF47 199 aa13.1□□□□□ -0.31
PDZRN3-212ENST00000498048 THOC2Q8NI27 1593 aaKnown RBP13.1□□□□□ -0.31
PDZRN3-212ENST00000498048 ABCA5Q8WWZ7 1642 aa13.1□□□□□ -0.31
PDZRN3-212ENST00000498048 CUL7Q14999 1698 aa13.09□□□□□ -0.31
PDZRN3-212ENST00000498048 KIF27Q86VH2 1401 aa13.08□□□□□ -0.32
PDZRN3-212ENST00000498048 MRC2Q9UBG0 1479 aa13.08□□□□□ -0.32
PDZRN3-212ENST00000498048 CUX2O14529 1486 aa13.07□□□□□ -0.32
PDZRN3-212ENST00000498048 CTTNBP2Q8WZ74 1663 aa13.06□□□□□ -0.32
PDZRN3-212ENST00000498048 WDR62O43379 1518 aa13.06□□□□□ -0.32
PDZRN3-212ENST00000498048 ABCA10Q8WWZ4 1543 aa13.05□□□□□ -0.32
PDZRN3-212ENST00000498048 TARBP1Q13395 1621 aaKnown RBP13.05□□□□□ -0.32
PDZRN3-212ENST00000498048 EHMT2Q96KQ7 1210 aa13.03□□□□□ -0.32
PDZRN3-212ENST00000498048 CSRNP3Q8WYN3 585 aa13.02□□□□□ -0.33
PDZRN3-212ENST00000498048 RAD54L2Q9Y4B4 1467 aa13.01□□□□□ -0.33
PDZRN3-212ENST00000498048 RAPGEF2Q9Y4G8 1499 aa13.01□□□□□ -0.33
PDZRN3-212ENST00000498048 ERCC6Q03468 1493 aa13□□□□□ -0.33
PDZRN3-212ENST00000498048 CEP162Q5TB80 1403 aa13□□□□□ -0.33
PDZRN3-212ENST00000498048 PRXQ9BXM0 1461 aa12.99□□□□□ -0.33
PDZRN3-212ENST00000498048 TNIKQ9UKE5 1360 aa12.98□□□□□ -0.33
PDZRN3-212ENST00000498048 PPP4R3CPQ6ZMV5 832 aa12.95□□□□□ -0.34
PDZRN3-212ENST00000498048 EIF4G3O43432 1585 aaKnown RBP12.94□□□□□ -0.34
PDZRN3-212ENST00000498048 ADAMTS12P58397 1594 aa12.93□□□□□ -0.34
PDZRN3-212ENST00000498048 GAPVD1Q14C86 1478 aa12.89□□□□□ -0.35
PDZRN3-212ENST00000498048 IFT140Q96RY7 1462 aa12.89□□□□□ -0.35
PDZRN3-212ENST00000498048 UBTFP17480 764 aaKnown RBP12.88□□□□□ -0.35
PDZRN3-212ENST00000498048 CLIP1P30622 1438 aa12.87□□□□□ -0.35
PDZRN3-212ENST00000498048 IGF1RP08069 1367 aa12.83□□□□□ -0.36
PDZRN3-212ENST00000498048 CARMIL1Q5VZK9 1371 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 146.4 ms