RNA–Protein interactions for RNA: ENST00000497700.1

ELL3-208, Transcript of elongation factor for RNA polymerase II 3, humanhuman

TSL 3

Gene ELL3, Length 574 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ELL3-208ENST00000497700 NISCHQ9Y2I1 1504 aa45.06■■■■■ 4.8
ELL3-208ENST00000497700 ABCC9O60706 1549 aa40.68■■■■■ 4.1
ELL3-208ENST00000497700 CCDC180Q9P1Z9 1646 aa40.48■■■■■ 4.07
ELL3-208ENST00000497700 RB1CC1Q8TDY2 1594 aa38.57■■■■□ 3.76
ELL3-208ENST00000497700 DNAJC5BQ9UF47 199 aa38.28■■■■□ 3.72
ELL3-208ENST00000497700 NACADO15069 1562 aa38.25■■■■□ 3.71
ELL3-208ENST00000497700 DCAF8L2P0C7V8 631 aa38.14■■■■□ 3.7
ELL3-208ENST00000497700 UNC13AQ9UPW8 1703 aa37.87■■■■□ 3.65
ELL3-208ENST00000497700 PABPN1Q86U42 306 aaKnown RBP eCLIP37.86■■■■□ 3.65
ELL3-208ENST00000497700 MYO15BQ96JP2 1530 aa37.61■■■■□ 3.61
ELL3-208ENST00000497700 BICRAQ9NZM4 1560 aa37.55■■■■□ 3.6
ELL3-208ENST00000497700 ZCCHC6Q5VYS8 1495 aaKnown RBP37.33■■■■□ 3.57
ELL3-208ENST00000497700 DCAF1Q9Y4B6 1507 aa37.12■■■■□ 3.53
ELL3-208ENST00000497700 SCRIBQ14160 1630 aa36.99■■■■□ 3.51
ELL3-208ENST00000497700 SHROOM4Q9ULL8 1493 aa36.82■■■■□ 3.48
ELL3-208ENST00000497700 CC2D2AQ9P2K1 1620 aa36.73■■■■□ 3.47
ELL3-208ENST00000497700 CECR2Q9BXF3 1484 aa36.6■■■■□ 3.45
ELL3-208ENST00000497700 EIF4G1Q04637 1599 aaKnown RBP36.6■■■■□ 3.45
ELL3-208ENST00000497700 NCAPD3P42695 1498 aa35.3■■■■□ 3.24
ELL3-208ENST00000497700 ATAD2BQ9ULI0 1458 aa35.24■■■■□ 3.23
ELL3-208ENST00000497700 SMARCA4P51532 1647 aa35.22■■■■□ 3.23
ELL3-208ENST00000497700 DNAJC5Q9H3Z4 198 aa35.1■■■■□ 3.21
ELL3-208ENST00000497700 SMARCA2P51531 1590 aa35.09■■■■□ 3.21
ELL3-208ENST00000497700 ERCC6Q03468 1493 aa35.07■■■■□ 3.2
ELL3-208ENST00000497700 HMGXB3Q12766 1538 aa35.06■■■■□ 3.2
ELL3-208ENST00000497700 CUX2O14529 1486 aa34.98■■■■□ 3.19
ELL3-208ENST00000497700 BAZ1AQ9NRL2 1556 aaPredicted RBP34.96■■■■□ 3.19
ELL3-208ENST00000497700 NESP48681 1621 aa34.95■■■■□ 3.18
ELL3-208ENST00000497700 BAZ1BQ9UIG0 1483 aaKnown RBP34.9■■■■□ 3.18
ELL3-208ENST00000497700 PEG3Q9GZU2 1588 aa34.8■■■■□ 3.16
ELL3-208ENST00000497700 MROH2BQ7Z745 1585 aa34.79■■■■□ 3.16
ELL3-208ENST00000497700 THOC2Q8NI27 1593 aaKnown RBP34.58■■■■□ 3.13
ELL3-208ENST00000497700 LAMC3Q9Y6N6 1575 aa34.56■■■■□ 3.12
ELL3-208ENST00000497700 KIF21AQ7Z4S6 1674 aa34.51■■■■□ 3.12
ELL3-208ENST00000497700 WIZO95785 1651 aa34.41■■■■□ 3.1
ELL3-208ENST00000497700 PDS5BQ9NTI5 1447 aa34.31■■■■□ 3.08
ELL3-208ENST00000497700 CADPSQ9ULU8 1353 aa34.23■■■■□ 3.07
ELL3-208ENST00000497700 MRC2Q9UBG0 1479 aa34.1■■■■□ 3.05
ELL3-208ENST00000497700 WDR62O43379 1518 aa34.03■■■■□ 3.04
ELL3-208ENST00000497700 RSF1Q96T23 1441 aaPredicted RBP33.97■■■■□ 3.03
ELL3-208ENST00000497700 CEP164Q9UPV0 1460 aa33.94■■■■□ 3.02
ELL3-208ENST00000497700 FANCD2Q9BXW9 1451 aa33.9■■■■□ 3.02
ELL3-208ENST00000497700 TOP2AP11388 1531 aaKnown RBP33.87■■■■□ 3.01
ELL3-208ENST00000497700 CFTRP13569 1480 aa33.83■■■■□ 3.01
ELL3-208ENST00000497700 URB2Q14146 1524 aaKnown RBP33.68■■■□□ 2.98
ELL3-208ENST00000497700 TRIM41Q8WV44 630 aa33.64■■■□□ 2.98
ELL3-208ENST00000497700 PRDM2Q13029 1718 aa33.59■■■□□ 2.97
ELL3-208ENST00000497700 CCDC88BA6NC98 1476 aa33.5■■■□□ 2.95
ELL3-208ENST00000497700 OSCARQ8IYS5 282 aa33.35■■■□□ 2.93
ELL3-208ENST00000497700 ZNF608Q9ULD9 1512 aaPredicted RBP33.3■■■□□ 2.92
ELL3-208ENST00000497700 TOPBP1Q92547 1522 aa33.27■■■□□ 2.92
ELL3-208ENST00000497700 IFT140Q96RY7 1462 aa33.23■■■□□ 2.91
ELL3-208ENST00000497700 DNMBPQ6XZF7 1577 aa33.12■■■□□ 2.89
ELL3-208ENST00000497700 EIF4G3O43432 1585 aaKnown RBP33.11■■■□□ 2.89
ELL3-208ENST00000497700 RIMBP3CA6NJZ7 1639 aa33.07■■■□□ 2.88
ELL3-208ENST00000497700 RIMBP3BA6NNM3 1639 aa33.07■■■□□ 2.88
ELL3-208ENST00000497700 RIMBP3Q9UFD9 1639 aa33.07■■■□□ 2.88
ELL3-208ENST00000497700 ABCC8Q09428 1581 aa33.05■■■□□ 2.88
ELL3-208ENST00000497700 TARBP1Q13395 1621 aaKnown RBP33■■■□□ 2.87
ELL3-208ENST00000497700 AQRO60306 1485 aaKnown RBP eCLIP32.96■■■□□ 2.87
ELL3-208ENST00000497700 CHD1O14646 1710 aa32.93■■■□□ 2.86
ELL3-208ENST00000497700 POLA1P09884 1462 aaPredicted RBP32.92■■■□□ 2.86
ELL3-208ENST00000497700 ARHGEF11O15085 1522 aa32.92■■■□□ 2.86
ELL3-208ENST00000497700 RAD54L2Q9Y4B4 1467 aa32.85■■■□□ 2.85
ELL3-208ENST00000497700 FBLN2P98095 1184 aa32.75■■■□□ 2.83
ELL3-208ENST00000497700 TDRD9Q8NDG6 1382 aaKnown RBP32.73■■■□□ 2.83
ELL3-208ENST00000497700 SOGA1O94964 1423 aa32.73■■■□□ 2.83
ELL3-208ENST00000497700 FGD5Q6ZNL6 1462 aa32.72■■■□□ 2.83
ELL3-208ENST00000497700 CUX1P39880 1505 aa32.68■■■□□ 2.82
ELL3-208ENST00000497700 CYB5RLQ6IPT4 315 aa32.66■■■□□ 2.82
ELL3-208ENST00000497700 SNAPC4Q5SXM2 1469 aa32.62■■■□□ 2.81
ELL3-208ENST00000497700 ARAP1Q96P48 1450 aa32.61■■■□□ 2.81
ELL3-208ENST00000497700 WDR97A6NE52 1622 aa32.52■■■□□ 2.8
ELL3-208ENST00000497700 CLASP1Q7Z460 1538 aa32.46■■■□□ 2.79
ELL3-208ENST00000497700 MAGI1Q96QZ7 1491 aaPredicted RBP32.45■■■□□ 2.79
ELL3-208ENST00000497700 GRIN2BQ13224 1484 aa32.44■■■□□ 2.78
ELL3-208ENST00000497700 SUPT5HO00267 1087 aaKnown RBP32.44■■■□□ 2.78
ELL3-208ENST00000497700 CHMP7Q8WUX9 453 aaPredicted RBP32.43■■■□□ 2.78
ELL3-208ENST00000497700 PBRM1Q86U86 1689 aa32.43■■■□□ 2.78
ELL3-208ENST00000497700 SYNJ1O43426 1573 aa32.4■■■□□ 2.78
ELL3-208ENST00000497700 SYNJ2O15056 1496 aa32.35■■■□□ 2.77
ELL3-208ENST00000497700 TRHP20396 242 aaPredicted RBP32.34■■■□□ 2.77
ELL3-208ENST00000497700 GAPVD1Q14C86 1478 aa32.34■■■□□ 2.77
ELL3-208ENST00000497700 ABCA5Q8WWZ7 1642 aa32.3■■■□□ 2.76
ELL3-208ENST00000497700 ABCA10Q8WWZ4 1543 aa32.28■■■□□ 2.76
ELL3-208ENST00000497700 BIVM-ERCC5R4GMW8 1640 aa32.11■■■□□ 2.73
ELL3-208ENST00000497700 WRNQ14191 1432 aaPredicted RBP eCLIP32.09■■■□□ 2.73
ELL3-208ENST00000497700 TOP2BQ02880 1626 aa32.08■■■□□ 2.73
ELL3-208ENST00000497700 ADAMTS12P58397 1594 aa32.07■■■□□ 2.72
ELL3-208ENST00000497700 GRIN2AQ12879 1464 aa32.07■■■□□ 2.72
ELL3-208ENST00000497700 ERCC6L2Q5T890 1561 aa32.06■■■□□ 2.72
ELL3-208ENST00000497700 CEP170Q5SW79 1584 aa32.02■■■□□ 2.72
ELL3-208ENST00000497700 NUP160Q12769 1436 aa31.94■■■□□ 2.7
ELL3-208ENST00000497700 FHAD1B1AJZ9 1412 aa31.9■■■□□ 2.7
ELL3-208ENST00000497700 ERICH3Q5RHP9 1530 aa31.85■■■□□ 2.69
ELL3-208ENST00000497700 SHROOM2Q13796 1616 aa31.85■■■□□ 2.69
ELL3-208ENST00000497700 PRG4Q92954 1404 aaPredicted RBP31.66■■■□□ 2.66
ELL3-208ENST00000497700 RUSC2Q8N2Y8 1516 aa31.63■■■□□ 2.65
ELL3-208ENST00000497700 JPH4Q96JJ6 628 aa31.59■■■□□ 2.65
ELL3-208ENST00000497700 KIF13AQ9H1H9 1805 aa31.55■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms