RNA–Protein interactions for RNA: ENST00000496570.1

DNMT3A-215, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 3

Gene DNMT3A, Length 656 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-215ENST00000496570 NISCHQ9Y2I1 1504 aa39.62■■■■□ 3.93
DNMT3A-215ENST00000496570 CCDC180Q9P1Z9 1646 aa35.24■■■■□ 3.23
DNMT3A-215ENST00000496570 ABCC9O60706 1549 aa34.56■■■■□ 3.12
DNMT3A-215ENST00000496570 RB1CC1Q8TDY2 1594 aa33.19■■■□□ 2.9
DNMT3A-215ENST00000496570 NACADO15069 1562 aa33.14■■■□□ 2.9
DNMT3A-215ENST00000496570 ZCCHC6Q5VYS8 1495 aaKnown RBP32.99■■■□□ 2.87
DNMT3A-215ENST00000496570 DCAF8L2P0C7V8 631 aa32.99■■■□□ 2.87
DNMT3A-215ENST00000496570 MYO15BQ96JP2 1530 aa32.95■■■□□ 2.87
DNMT3A-215ENST00000496570 DCAF1Q9Y4B6 1507 aa32.77■■■□□ 2.84
DNMT3A-215ENST00000496570 UNC13AQ9UPW8 1703 aa32.52■■■□□ 2.8
DNMT3A-215ENST00000496570 BICRAQ9NZM4 1560 aa32.3■■■□□ 2.76
DNMT3A-215ENST00000496570 PABPN1Q86U42 306 aaKnown RBP eCLIP32.28■■■□□ 2.76
DNMT3A-215ENST00000496570 SCRIBQ14160 1630 aa32.15■■■□□ 2.74
DNMT3A-215ENST00000496570 DNAJC5BQ9UF47 199 aa31.89■■■□□ 2.7
DNMT3A-215ENST00000496570 SHROOM4Q9ULL8 1493 aa31.85■■■□□ 2.69
DNMT3A-215ENST00000496570 EIF4G1Q04637 1599 aaKnown RBP31.39■■■□□ 2.62
DNMT3A-215ENST00000496570 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
DNMT3A-215ENST00000496570 CECR2Q9BXF3 1484 aa31.06■■■□□ 2.56
DNMT3A-215ENST00000496570 SMARCA4P51532 1647 aa30.76■■■□□ 2.52
DNMT3A-215ENST00000496570 BAZ1AQ9NRL2 1556 aaPredicted RBP30.67■■■□□ 2.5
DNMT3A-215ENST00000496570 ATAD2BQ9ULI0 1458 aa30.62■■■□□ 2.49
DNMT3A-215ENST00000496570 NCAPD3P42695 1498 aa30.61■■■□□ 2.49
DNMT3A-215ENST00000496570 MROH2BQ7Z745 1585 aa30.56■■■□□ 2.48
DNMT3A-215ENST00000496570 SMARCA2P51531 1590 aa30.53■■■□□ 2.48
DNMT3A-215ENST00000496570 PEG3Q9GZU2 1588 aa30.49■■■□□ 2.47
DNMT3A-215ENST00000496570 HMGXB3Q12766 1538 aa30.45■■■□□ 2.47
DNMT3A-215ENST00000496570 BAZ1BQ9UIG0 1483 aaKnown RBP30.31■■■□□ 2.44
DNMT3A-215ENST00000496570 WIZO95785 1651 aa30.21■■■□□ 2.43
DNMT3A-215ENST00000496570 RSF1Q96T23 1441 aaPredicted RBP30.15■■■□□ 2.42
DNMT3A-215ENST00000496570 NESP48681 1621 aa29.93■■■□□ 2.38
DNMT3A-215ENST00000496570 TOP2AP11388 1531 aaKnown RBP29.86■■■□□ 2.37
DNMT3A-215ENST00000496570 LAMC3Q9Y6N6 1575 aa29.79■■■□□ 2.36
DNMT3A-215ENST00000496570 ERCC6Q03468 1493 aa29.73■■■□□ 2.35
DNMT3A-215ENST00000496570 CADPSQ9ULU8 1353 aa29.69■■■□□ 2.34
DNMT3A-215ENST00000496570 KIF21AQ7Z4S6 1674 aa29.56■■■□□ 2.32
DNMT3A-215ENST00000496570 PDS5BQ9NTI5 1447 aa29.54■■■□□ 2.32
DNMT3A-215ENST00000496570 CCDC88BA6NC98 1476 aa29.53■■■□□ 2.32
DNMT3A-215ENST00000496570 CFTRP13569 1480 aa29.52■■■□□ 2.32
DNMT3A-215ENST00000496570 THOC2Q8NI27 1593 aaKnown RBP29.51■■■□□ 2.31
DNMT3A-215ENST00000496570 CUX2O14529 1486 aa29.5■■■□□ 2.31
DNMT3A-215ENST00000496570 FANCD2Q9BXW9 1451 aa29.35■■■□□ 2.29
DNMT3A-215ENST00000496570 MRC2Q9UBG0 1479 aa29.29■■■□□ 2.28
DNMT3A-215ENST00000496570 CEP164Q9UPV0 1460 aa29.29■■■□□ 2.28
DNMT3A-215ENST00000496570 PRDM2Q13029 1718 aa29.28■■■□□ 2.28
DNMT3A-215ENST00000496570 WDR62O43379 1518 aa29.24■■■□□ 2.27
DNMT3A-215ENST00000496570 SUPT5HO00267 1087 aaKnown RBP29.22■■■□□ 2.27
DNMT3A-215ENST00000496570 URB2Q14146 1524 aaKnown RBP29.11■■■□□ 2.25
DNMT3A-215ENST00000496570 TOPBP1Q92547 1522 aa28.89■■■□□ 2.21
DNMT3A-215ENST00000496570 DNMBPQ6XZF7 1577 aa28.84■■■□□ 2.21
DNMT3A-215ENST00000496570 ABCC8Q09428 1581 aa28.81■■■□□ 2.2
DNMT3A-215ENST00000496570 DNAJC5Q9H3Z4 198 aa28.71■■■□□ 2.19
DNMT3A-215ENST00000496570 IFT140Q96RY7 1462 aa28.7■■■□□ 2.18
DNMT3A-215ENST00000496570 CUX1P39880 1505 aa28.66■■■□□ 2.18
DNMT3A-215ENST00000496570 POLA1P09884 1462 aaPredicted RBP28.65■■■□□ 2.18
DNMT3A-215ENST00000496570 ZNF608Q9ULD9 1512 aaPredicted RBP28.64■■■□□ 2.17
DNMT3A-215ENST00000496570 TARBP1Q13395 1621 aaKnown RBP28.62■■■□□ 2.17
DNMT3A-215ENST00000496570 FGD5Q6ZNL6 1462 aa28.54■■■□□ 2.16
DNMT3A-215ENST00000496570 RAD54L2Q9Y4B4 1467 aa28.53■■■□□ 2.16
DNMT3A-215ENST00000496570 EIF4G3O43432 1585 aaKnown RBP28.5■■■□□ 2.15
DNMT3A-215ENST00000496570 SOGA1O94964 1423 aa28.48■■■□□ 2.15
DNMT3A-215ENST00000496570 AQRO60306 1485 aaKnown RBP eCLIP28.44■■■□□ 2.14
DNMT3A-215ENST00000496570 SYNJ1O43426 1573 aa28.39■■■□□ 2.14
DNMT3A-215ENST00000496570 WRNQ14191 1432 aaPredicted RBP eCLIP28.38■■■□□ 2.13
DNMT3A-215ENST00000496570 BIVM-ERCC5R4GMW8 1640 aa28.38■■■□□ 2.13
DNMT3A-215ENST00000496570 TOP2BQ02880 1626 aa28.37■■■□□ 2.13
DNMT3A-215ENST00000496570 WDR97A6NE52 1622 aa28.36■■■□□ 2.13
DNMT3A-215ENST00000496570 TDRD9Q8NDG6 1382 aaKnown RBP28.35■■■□□ 2.13
DNMT3A-215ENST00000496570 ABCA10Q8WWZ4 1543 aa28.28■■■□□ 2.12
DNMT3A-215ENST00000496570 OSCARQ8IYS5 282 aa28.21■■■□□ 2.11
DNMT3A-215ENST00000496570 ABCA5Q8WWZ7 1642 aa28.2■■■□□ 2.1
DNMT3A-215ENST00000496570 GRIN2BQ13224 1484 aa28.16■■■□□ 2.1
DNMT3A-215ENST00000496570 SNAPC4Q5SXM2 1469 aa28.16■■■□□ 2.1
DNMT3A-215ENST00000496570 GAPVD1Q14C86 1478 aa28.15■■■□□ 2.1
DNMT3A-215ENST00000496570 CHD1O14646 1710 aa28.15■■■□□ 2.1
DNMT3A-215ENST00000496570 PBRM1Q86U86 1689 aa28.13■■■□□ 2.09
DNMT3A-215ENST00000496570 MAGI1Q96QZ7 1491 aaPredicted RBP28.1■■■□□ 2.09
DNMT3A-215ENST00000496570 FBLN2P98095 1184 aa28■■■□□ 2.07
DNMT3A-215ENST00000496570 SYNJ2O15056 1496 aa28■■■□□ 2.07
DNMT3A-215ENST00000496570 ADAMTS12P58397 1594 aa27.92■■■□□ 2.06
DNMT3A-215ENST00000496570 CHMP7Q8WUX9 453 aaPredicted RBP27.92■■■□□ 2.06
DNMT3A-215ENST00000496570 ERICH3Q5RHP9 1530 aa27.92■■■□□ 2.06
DNMT3A-215ENST00000496570 CLASP1Q7Z460 1538 aa27.87■■■□□ 2.05
DNMT3A-215ENST00000496570 RIMBP3CA6NJZ7 1639 aa27.86■■■□□ 2.05
DNMT3A-215ENST00000496570 RIMBP3BA6NNM3 1639 aa27.86■■■□□ 2.05
DNMT3A-215ENST00000496570 RIMBP3Q9UFD9 1639 aa27.86■■■□□ 2.05
DNMT3A-215ENST00000496570 ARHGEF11O15085 1522 aa27.83■■■□□ 2.05
DNMT3A-215ENST00000496570 FHAD1B1AJZ9 1412 aa27.83■■■□□ 2.05
DNMT3A-215ENST00000496570 GRIN2AQ12879 1464 aa27.82■■■□□ 2.04
DNMT3A-215ENST00000496570 KIF27Q86VH2 1401 aa27.76■■■□□ 2.04
DNMT3A-215ENST00000496570 IGF1RP08069 1367 aa27.73■■■□□ 2.03
DNMT3A-215ENST00000496570 NUP160Q12769 1436 aa27.73■■■□□ 2.03
DNMT3A-215ENST00000496570 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
DNMT3A-215ENST00000496570 TRIM41Q8WV44 630 aa27.67■■■□□ 2.02
DNMT3A-215ENST00000496570 CUL7Q14999 1698 aa27.63■■■□□ 2.01
DNMT3A-215ENST00000496570 ARAP1Q96P48 1450 aa27.63■■■□□ 2.01
DNMT3A-215ENST00000496570 RUSC2Q8N2Y8 1516 aa27.6■■■□□ 2.01
DNMT3A-215ENST00000496570 SHROOM2Q13796 1616 aa27.55■■■□□ 2
DNMT3A-215ENST00000496570 CARMIL1Q5VZK9 1371 aa27.52■■■□□ 2
DNMT3A-215ENST00000496570 CYB5RLQ6IPT4 315 aa27.52■■■□□ 2
DNMT3A-215ENST00000496570 ERCC6L2Q5T890 1561 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms