RNA–Protein interactions for RNA: ENST00000496360.5

MACF1-223, Transcript of microtubule-actin crosslinking factor 1, humanhuman

TSL 2

Gene MACF1, Length 2,080 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MACF1-223ENST00000496360 NISCHQ9Y2I1 1504 aa31.2■■■□□ 2.59
MACF1-223ENST00000496360 CCDC180Q9P1Z9 1646 aa27.81■■■□□ 2.04
MACF1-223ENST00000496360 ABCC9O60706 1549 aa27.39■■□□□ 1.98
MACF1-223ENST00000496360 RB1CC1Q8TDY2 1594 aa26.27■■□□□ 1.8
MACF1-223ENST00000496360 NACADO15069 1562 aa26.2■■□□□ 1.79
MACF1-223ENST00000496360 DCAF8L2P0C7V8 631 aa26.14■■□□□ 1.77
MACF1-223ENST00000496360 MYO15BQ96JP2 1530 aa25.99■■□□□ 1.75
MACF1-223ENST00000496360 ZCCHC6Q5VYS8 1495 aaKnown RBP25.96■■□□□ 1.75
MACF1-223ENST00000496360 DCAF1Q9Y4B6 1507 aa25.81■■□□□ 1.72
MACF1-223ENST00000496360 UNC13AQ9UPW8 1703 aa25.65■■□□□ 1.7
MACF1-223ENST00000496360 PABPN1Q86U42 306 aaKnown RBP eCLIP25.57■■□□□ 1.68
MACF1-223ENST00000496360 BICRAQ9NZM4 1560 aa25.48■■□□□ 1.67
MACF1-223ENST00000496360 SCRIBQ14160 1630 aa25.36■■□□□ 1.65
MACF1-223ENST00000496360 DNAJC5BQ9UF47 199 aa25.3■■□□□ 1.64
MACF1-223ENST00000496360 HRCP23327 699 aa25.22■■□□□ 1.63
MACF1-223ENST00000496360 SHROOM4Q9ULL8 1493 aa25.21■■□□□ 1.63
MACF1-223ENST00000496360 PELP1Q8IZL8 1130 aaKnown RBP24.89■■□□□ 1.57
MACF1-223ENST00000496360 EIF4G1Q04637 1599 aaKnown RBP24.83■■□□□ 1.56
MACF1-223ENST00000496360 CC2D2AQ9P2K1 1620 aa24.76■■□□□ 1.55
MACF1-223ENST00000496360 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.53
MACF1-223ENST00000496360 PCGF6Q9BYE7 350 aa24.34■■□□□ 1.49
MACF1-223ENST00000496360 SUPT5HO00267 1087 aaKnown RBP24.31■■□□□ 1.48
MACF1-223ENST00000496360 CHIC1Q5VXU3 224 aa24.26■■□□□ 1.47
MACF1-223ENST00000496360 SMARCA4P51532 1647 aa24.25■■□□□ 1.47
MACF1-223ENST00000496360 PPARGC1BQ86YN6 1023 aaKnown RBP24.2■■□□□ 1.46
MACF1-223ENST00000496360 BAZ1AQ9NRL2 1556 aaPredicted RBP24.19■■□□□ 1.46
MACF1-223ENST00000496360 NCAPD3P42695 1498 aa24.18■■□□□ 1.46
MACF1-223ENST00000496360 ATAD2BQ9ULI0 1458 aa24.17■■□□□ 1.46
MACF1-223ENST00000496360 SMARCA2P51531 1590 aa24.13■■□□□ 1.45
MACF1-223ENST00000496360 MYT1Q01538 1121 aa24.12■■□□□ 1.45
MACF1-223ENST00000496360 HMGXB3Q12766 1538 aa24.04■■□□□ 1.44
MACF1-223ENST00000496360 MROH2BQ7Z745 1585 aa24.04■■□□□ 1.44
MACF1-223ENST00000496360 PEG3Q9GZU2 1588 aa24.02■■□□□ 1.44
MACF1-223ENST00000496360 ZEB1P37275 1124 aaPredicted RBP23.99■■□□□ 1.43
MACF1-223ENST00000496360 BAZ1BQ9UIG0 1483 aaKnown RBP23.96■■□□□ 1.43
MACF1-223ENST00000496360 TRIM26Q12899 539 aaPredicted RBP23.9■■□□□ 1.42
MACF1-223ENST00000496360 WIZO95785 1651 aa23.76■■□□□ 1.39
MACF1-223ENST00000496360 RSF1Q96T23 1441 aaPredicted RBP23.71■■□□□ 1.39
MACF1-223ENST00000496360 SCAF1Q9H7N4 1312 aaKnown RBP23.7■■□□□ 1.38
MACF1-223ENST00000496360 NESP48681 1621 aa23.65■■□□□ 1.38
MACF1-223ENST00000496360 ERCC6Q03468 1493 aa23.63■■□□□ 1.37
MACF1-223ENST00000496360 LAMC3Q9Y6N6 1575 aa23.57■■□□□ 1.36
MACF1-223ENST00000496360 TOP2AP11388 1531 aaKnown RBP23.52■■□□□ 1.36
MACF1-223ENST00000496360 CADPSQ9ULU8 1353 aa23.47■■□□□ 1.35
MACF1-223ENST00000496360 CUX2O14529 1486 aa23.45■■□□□ 1.34
MACF1-223ENST00000496360 PDS5BQ9NTI5 1447 aa23.43■■□□□ 1.34
MACF1-223ENST00000496360 LOC105371045A0A1W2PR82 267 aa23.39■■□□□ 1.33
MACF1-223ENST00000496360 KIF21AQ7Z4S6 1674 aa23.35■■□□□ 1.33
MACF1-223ENST00000496360 THOC2Q8NI27 1593 aaKnown RBP23.33■■□□□ 1.33
MACF1-223ENST00000496360 CFTRP13569 1480 aa23.29■■□□□ 1.32
MACF1-223ENST00000496360 ACIN1Q9UKV3 1341 aaKnown RBP23.28■■□□□ 1.32
MACF1-223ENST00000496360 CCDC88BA6NC98 1476 aa23.24■■□□□ 1.31
MACF1-223ENST00000496360 FANCD2Q9BXW9 1451 aa23.2■■□□□ 1.3
MACF1-223ENST00000496360 MRC2Q9UBG0 1479 aa23.2■■□□□ 1.3
MACF1-223ENST00000496360 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
MACF1-223ENST00000496360 CENPBP07199 599 aaPredicted RBP23.12■■□□□ 1.29
MACF1-223ENST00000496360 WDR62O43379 1518 aa23.12■■□□□ 1.29
MACF1-223ENST00000496360 PRDM2Q13029 1718 aa23.08■■□□□ 1.29
MACF1-223ENST00000496360 NEUROD1Q13562 356 aa23.01■■□□□ 1.27
MACF1-223ENST00000496360 URB2Q14146 1524 aaKnown RBP22.98■■□□□ 1.27
MACF1-223ENST00000496360 DNAJC5Q9H3Z4 198 aa22.94■■□□□ 1.26
MACF1-223ENST00000496360 GTF3C3Q9Y5Q9 886 aa22.93■■□□□ 1.26
MACF1-223ENST00000496360 TOPBP1Q92547 1522 aa22.8■■□□□ 1.24
MACF1-223ENST00000496360 ABCC8Q09428 1581 aa22.8■■□□□ 1.24
MACF1-223ENST00000496360 DIEXFQ68CQ4 756 aaKnown RBP22.77■■□□□ 1.23
MACF1-223ENST00000496360 DNMBPQ6XZF7 1577 aa22.76■■□□□ 1.23
MACF1-223ENST00000496360 TTBK1Q5TCY1 1321 aaPredicted RBP22.74■■□□□ 1.23
MACF1-223ENST00000496360 TRIM41Q8WV44 630 aa22.72■■□□□ 1.23
MACF1-223ENST00000496360 IFT140Q96RY7 1462 aa22.72■■□□□ 1.23
MACF1-223ENST00000496360 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.21
MACF1-223ENST00000496360 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
MACF1-223ENST00000496360 POLA1P09884 1462 aaPredicted RBP22.6■■□□□ 1.21
MACF1-223ENST00000496360 CUX1P39880 1505 aa22.57■■□□□ 1.2
MACF1-223ENST00000496360 TARBP1Q13395 1621 aaKnown RBP22.56■■□□□ 1.2
MACF1-223ENST00000496360 FGD5Q6ZNL6 1462 aa22.52■■□□□ 1.2
MACF1-223ENST00000496360 EIF4G3O43432 1585 aaKnown RBP22.51■■□□□ 1.19
MACF1-223ENST00000496360 SOGA1O94964 1423 aa22.51■■□□□ 1.19
MACF1-223ENST00000496360 RAD54L2Q9Y4B4 1467 aa22.5■■□□□ 1.19
MACF1-223ENST00000496360 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.5■■□□□ 1.19
MACF1-223ENST00000496360 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.192e-6■■■□□ 18.3
MACF1-223ENST00000496360 CLSPNQ9HAW4 1339 aa22.45■■□□□ 1.18
MACF1-223ENST00000496360 OSCARQ8IYS5 282 aa22.45■■□□□ 1.18
MACF1-223ENST00000496360 ZNF316A6NFI3 1004 aaPredicted RBP22.42■■□□□ 1.18
MACF1-223ENST00000496360 TDRD9Q8NDG6 1382 aaKnown RBP22.4■■□□□ 1.18
MACF1-223ENST00000496360 WDR97A6NE52 1622 aa22.38■■□□□ 1.17
MACF1-223ENST00000496360 WRNQ14191 1432 aaPredicted RBP eCLIP22.38■■□□□ 1.17
MACF1-223ENST00000496360 FAM9AQ8IZU1 332 aaPredicted RBP22.35■■□□□ 1.17
MACF1-223ENST00000496360 TOP2BQ02880 1626 aa22.32■■□□□ 1.16
MACF1-223ENST00000496360 BIVM-ERCC5R4GMW8 1640 aa22.32■■□□□ 1.16
MACF1-223ENST00000496360 SYNJ1O43426 1573 aa22.3■■□□□ 1.16
MACF1-223ENST00000496360 ABCA10Q8WWZ4 1543 aa22.3■■□□□ 1.16
MACF1-223ENST00000496360 GRIN2BQ13224 1484 aa22.27■■□□□ 1.16
MACF1-223ENST00000496360 SNAPC4Q5SXM2 1469 aa22.26■■□□□ 1.15
MACF1-223ENST00000496360 CHD1O14646 1710 aa22.26■■□□□ 1.15
MACF1-223ENST00000496360 GAPVD1Q14C86 1478 aa22.24■■□□□ 1.15
MACF1-223ENST00000496360 FBLN2P98095 1184 aa22.24■■□□□ 1.15
MACF1-223ENST00000496360 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
MACF1-223ENST00000496360 ABCA5Q8WWZ7 1642 aa22.22■■□□□ 1.15
MACF1-223ENST00000496360 PBRM1Q86U86 1689 aa22.19■■□□□ 1.14
MACF1-223ENST00000496360 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms