RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-218ENST00000496197 NISCHQ9Y2I1 1504 aa32.25■■■□□ 2.75
PTPN7-218ENST00000496197 CCDC180Q9P1Z9 1646 aa28.5■■■□□ 2.15
PTPN7-218ENST00000496197 ABCC9O60706 1549 aa27.48■■□□□ 1.99
PTPN7-218ENST00000496197 ZCCHC6Q5VYS8 1495 aaKnown RBP26.97■■□□□ 1.91
PTPN7-218ENST00000496197 DCAF8L2P0C7V8 631 aa26.68■■□□□ 1.86
PTPN7-218ENST00000496197 DCAF1Q9Y4B6 1507 aa26.65■■□□□ 1.86
PTPN7-218ENST00000496197 NACADO15069 1562 aa26.63■■□□□ 1.85
PTPN7-218ENST00000496197 MYO15BQ96JP2 1530 aa26.58■■□□□ 1.85
PTPN7-218ENST00000496197 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
PTPN7-218ENST00000496197 UNC13AQ9UPW8 1703 aa26.18■■□□□ 1.78
PTPN7-218ENST00000496197 SCRIBQ14160 1630 aa26.09■■□□□ 1.77
PTPN7-218ENST00000496197 BICRAQ9NZM4 1560 aa25.86■■□□□ 1.73
PTPN7-218ENST00000496197 SHROOM4Q9ULL8 1493 aa25.78■■□□□ 1.72
PTPN7-218ENST00000496197 PABPN1Q86U42 306 aaKnown RBP eCLIP25.72■■□□□ 1.71
PTPN7-218ENST00000496197 CECR2Q9BXF3 1484 aa25.13■■□□□ 1.61
PTPN7-218ENST00000496197 EIF4G1Q04637 1599 aaKnown RBP25.09■■□□□ 1.61
PTPN7-218ENST00000496197 SMARCA4P51532 1647 aa24.97■■□□□ 1.59
PTPN7-218ENST00000496197 BAZ1AQ9NRL2 1556 aaPredicted RBP24.94■■□□□ 1.58
PTPN7-218ENST00000496197 MROH2BQ7Z745 1585 aa24.91■■□□□ 1.58
PTPN7-218ENST00000496197 CC2D2AQ9P2K1 1620 aa24.9■■□□□ 1.58
PTPN7-218ENST00000496197 DNAJC5BQ9UF47 199 aa24.85■■□□□ 1.57
PTPN7-218ENST00000496197 RSF1Q96T23 1441 aaPredicted RBP24.73■■□□□ 1.55
PTPN7-218ENST00000496197 WIZO95785 1651 aa24.71■■□□□ 1.55
PTPN7-218ENST00000496197 PEG3Q9GZU2 1588 aa24.69■■□□□ 1.54
PTPN7-218ENST00000496197 ATAD2BQ9ULI0 1458 aa24.67■■□□□ 1.54
PTPN7-218ENST00000496197 SMARCA2P51531 1590 aa24.63■■□□□ 1.53
PTPN7-218ENST00000496197 NCAPD3P42695 1498 aa24.55■■□□□ 1.52
PTPN7-218ENST00000496197 HMGXB3Q12766 1538 aa24.51■■□□□ 1.51
PTPN7-218ENST00000496197 BAZ1BQ9UIG0 1483 aaKnown RBP24.48■■□□□ 1.51
PTPN7-218ENST00000496197 SUPT5HO00267 1087 aaKnown RBP24.39■■□□□ 1.5
PTPN7-218ENST00000496197 TOP2AP11388 1531 aaKnown RBP24.39■■□□□ 1.5
PTPN7-218ENST00000496197 CCDC88BA6NC98 1476 aa24.1■■□□□ 1.45
PTPN7-218ENST00000496197 NESP48681 1621 aa23.96■■□□□ 1.43
PTPN7-218ENST00000496197 LAMC3Q9Y6N6 1575 aa23.88■■□□□ 1.41
PTPN7-218ENST00000496197 CADPSQ9ULU8 1353 aa23.85■■□□□ 1.41
PTPN7-218ENST00000496197 CFTRP13569 1480 aa23.84■■□□□ 1.41
PTPN7-218ENST00000496197 PRDM2Q13029 1718 aa23.82■■□□□ 1.4
PTPN7-218ENST00000496197 KIF21AQ7Z4S6 1674 aa23.73■■□□□ 1.39
PTPN7-218ENST00000496197 FANCD2Q9BXW9 1451 aa23.62■■□□□ 1.37
PTPN7-218ENST00000496197 PDS5BQ9NTI5 1447 aa23.61■■□□□ 1.37
PTPN7-218ENST00000496197 ERCC6Q03468 1493 aa23.57■■□□□ 1.36
PTPN7-218ENST00000496197 CEP164Q9UPV0 1460 aa23.54■■□□□ 1.36
PTPN7-218ENST00000496197 THOC2Q8NI27 1593 aaKnown RBP23.51■■□□□ 1.35
PTPN7-218ENST00000496197 ABCC8Q09428 1581 aa23.43■■□□□ 1.34
PTPN7-218ENST00000496197 MRC2Q9UBG0 1479 aa23.42■■□□□ 1.34
PTPN7-218ENST00000496197 URB2Q14146 1524 aaKnown RBP23.42■■□□□ 1.34
PTPN7-218ENST00000496197 WDR62O43379 1518 aa23.36■■□□□ 1.33
PTPN7-218ENST00000496197 CUX1P39880 1505 aa23.34■■□□□ 1.33
PTPN7-218ENST00000496197 DNMBPQ6XZF7 1577 aa23.32■■□□□ 1.32
PTPN7-218ENST00000496197 TOPBP1Q92547 1522 aa23.31■■□□□ 1.32
PTPN7-218ENST00000496197 SYNJ1O43426 1573 aa23.3■■□□□ 1.32
PTPN7-218ENST00000496197 WRNQ14191 1432 aaPredicted RBP eCLIP23.27■■□□□ 1.32
PTPN7-218ENST00000496197 BIVM-ERCC5R4GMW8 1640 aa23.26■■□□□ 1.31
PTPN7-218ENST00000496197 TOP2BQ02880 1626 aa23.23■■□□□ 1.31
PTPN7-218ENST00000496197 CUX2O14529 1486 aa23.16■■□□□ 1.3
PTPN7-218ENST00000496197 FGD5Q6ZNL6 1462 aa23.16■■□□□ 1.3
PTPN7-218ENST00000496197 POLA1P09884 1462 aaPredicted RBP23.15■■□□□ 1.3
PTPN7-218ENST00000496197 TARBP1Q13395 1621 aaKnown RBP23.08■■□□□ 1.29
PTPN7-218ENST00000496197 RAD54L2Q9Y4B4 1467 aa23.07■■□□□ 1.28
PTPN7-218ENST00000496197 WDR97A6NE52 1622 aa23.05■■□□□ 1.28
PTPN7-218ENST00000496197 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
PTPN7-218ENST00000496197 SOGA1O94964 1423 aa23■■□□□ 1.27
PTPN7-218ENST00000496197 IFT140Q96RY7 1462 aa23■■□□□ 1.27
PTPN7-218ENST00000496197 ZNF608Q9ULD9 1512 aaPredicted RBP22.96■■□□□ 1.27
PTPN7-218ENST00000496197 TRIM41Q8WV44 630 aa22.95■■□□□ 1.26
PTPN7-218ENST00000496197 ABCA10Q8WWZ4 1543 aa22.93■■□□□ 1.26
PTPN7-218ENST00000496197 EIF4G3O43432 1585 aaKnown RBP22.91■■□□□ 1.26
PTPN7-218ENST00000496197 ABCA5Q8WWZ7 1642 aa22.87■■□□□ 1.25
PTPN7-218ENST00000496197 TDRD9Q8NDG6 1382 aaKnown RBP22.85■■□□□ 1.25
PTPN7-218ENST00000496197 AQRO60306 1485 aaKnown RBP eCLIP22.85■■□□□ 1.253e-7■■■■■ 30.8
PTPN7-218ENST00000496197 PBRM1Q86U86 1689 aa22.82■■□□□ 1.24
PTPN7-218ENST00000496197 RUSC2Q8N2Y8 1516 aa22.79■■□□□ 1.24
PTPN7-218ENST00000496197 GAPVD1Q14C86 1478 aa22.77■■□□□ 1.24
PTPN7-218ENST00000496197 KIF27Q86VH2 1401 aa22.71■■□□□ 1.23
PTPN7-218ENST00000496197 GRIN2BQ13224 1484 aa22.69■■□□□ 1.22
PTPN7-218ENST00000496197 ERICH3Q5RHP9 1530 aa22.65■■□□□ 1.22
PTPN7-218ENST00000496197 SNAPC4Q5SXM2 1469 aa22.65■■□□□ 1.22
PTPN7-218ENST00000496197 ADAMTS12P58397 1594 aa22.6■■□□□ 1.21
PTPN7-218ENST00000496197 IGF1RP08069 1367 aa22.6■■□□□ 1.21
PTPN7-218ENST00000496197 MAGI1Q96QZ7 1491 aaPredicted RBP22.58■■□□□ 1.21
PTPN7-218ENST00000496197 CHD1O14646 1710 aa22.58■■□□□ 1.21
PTPN7-218ENST00000496197 CUL7Q14999 1698 aa22.56■■□□□ 1.2
PTPN7-218ENST00000496197 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
PTPN7-218ENST00000496197 EEA1Q15075 1411 aa22.53■■□□□ 1.2
PTPN7-218ENST00000496197 SYNJ2O15056 1496 aa22.5■■□□□ 1.19
PTPN7-218ENST00000496197 FHAD1B1AJZ9 1412 aa22.49■■□□□ 1.19
PTPN7-218ENST00000496197 DNAJC5Q9H3Z4 198 aa22.48■■□□□ 1.19
PTPN7-218ENST00000496197 CARMIL1Q5VZK9 1371 aa22.46■■□□□ 1.19
PTPN7-218ENST00000496197 CSRNP3Q8WYN3 585 aa22.45■■□□□ 1.18
PTPN7-218ENST00000496197 PRXQ9BXM0 1461 aa22.45■■□□□ 1.18
PTPN7-218ENST00000496197 GRIN2AQ12879 1464 aa22.43■■□□□ 1.18
PTPN7-218ENST00000496197 FBLN2P98095 1184 aa22.41■■□□□ 1.18
PTPN7-218ENST00000496197 CHMP7Q8WUX9 453 aaPredicted RBP22.39■■□□□ 1.17
PTPN7-218ENST00000496197 RAPGEF2Q9Y4G8 1499 aa22.39■■□□□ 1.17
PTPN7-218ENST00000496197 KIF21BO75037 1637 aa22.38■■□□□ 1.17
PTPN7-218ENST00000496197 CEP170Q5SW79 1584 aa22.37■■□□□ 1.17
PTPN7-218ENST00000496197 NUP160Q12769 1436 aa22.31■■□□□ 1.16
PTPN7-218ENST00000496197 EHMT2Q96KQ7 1210 aa22.28■■□□□ 1.16
PTPN7-218ENST00000496197 CLASP1Q7Z460 1538 aa22.27■■□□□ 1.16
PTPN7-218ENST00000496197 CTTNBP2Q8WZ74 1663 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms