RNA–Protein interactions for RNA: ENST00000495955.5

GAPVD1-219, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 1 (best) BASIC

Gene GAPVD1, Length 5,309 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-219ENST00000495955 NISCHQ9Y2I1 1504 aa19.35■□□□□ 0.69
GAPVD1-219ENST00000495955 DCAF8L2P0C7V8 631 aa18.01■□□□□ 0.47
GAPVD1-219ENST00000495955 SHROOM4Q9ULL8 1493 aa16.92■□□□□ 0.3
GAPVD1-219ENST00000495955 ABCC9O60706 1549 aa16.81■□□□□ 0.28
GAPVD1-219ENST00000495955 CCDC180Q9P1Z9 1646 aa16.55■□□□□ 0.24
GAPVD1-219ENST00000495955 SUPT5HO00267 1087 aaKnown RBP16.54■□□□□ 0.24
GAPVD1-219ENST00000495955 PABPN1Q86U42 306 aaKnown RBP eCLIP16.2■□□□□ 0.18
GAPVD1-219ENST00000495955 ZCCHC6Q5VYS8 1495 aaKnown RBP16.06■□□□□ 0.16
GAPVD1-219ENST00000495955 RB1CC1Q8TDY2 1594 aa15.94■□□□□ 0.14
GAPVD1-219ENST00000495955 SCRIBQ14160 1630 aa15.9■□□□□ 0.14
GAPVD1-219ENST00000495955 NACADO15069 1562 aa15.83■□□□□ 0.13
GAPVD1-219ENST00000495955 EHMT2Q96KQ7 1210 aa15.6■□□□□ 0.09
GAPVD1-219ENST00000495955 DCAF1Q9Y4B6 1507 aa15.59■□□□□ 0.09
GAPVD1-219ENST00000495955 FAM9AQ8IZU1 332 aaPredicted RBP15.46■□□□□ 0.07
GAPVD1-219ENST00000495955 TRIM41Q8WV44 630 aa15.45■□□□□ 0.06
GAPVD1-219ENST00000495955 MYO15BQ96JP2 1530 aa15.4■□□□□ 0.06
GAPVD1-219ENST00000495955 RANGAP1P46060 587 aaPredicted RBP15.22■□□□□ 0.03
GAPVD1-219ENST00000495955 CECR2Q9BXF3 1484 aa15.15■□□□□ 0.02
GAPVD1-219ENST00000495955 BAZ1AQ9NRL2 1556 aaPredicted RBP15.11■□□□□ 0.01
GAPVD1-219ENST00000495955 RSF1Q96T23 1441 aaPredicted RBP15.11■□□□□ 0.01
GAPVD1-219ENST00000495955 BAZ1BQ9UIG0 1483 aaKnown RBP15.1■□□□□ 0.01
GAPVD1-219ENST00000495955 UBTFP17480 764 aaKnown RBP15.1■□□□□ 0.01
GAPVD1-219ENST00000495955 APLP2Q06481 763 aa15.05■□□□□ -0
GAPVD1-219ENST00000495955 ATP1B4Q9UN42 357 aaPredicted RBP15□□□□□ -0.01
GAPVD1-219ENST00000495955 CHIC1Q5VXU3 224 aa15□□□□□ -0.01
GAPVD1-219ENST00000495955 MROH2BQ7Z745 1585 aa14.97□□□□□ -0.01
GAPVD1-219ENST00000495955 TTBK1Q5TCY1 1321 aaPredicted RBP14.94□□□□□ -0.02
GAPVD1-219ENST00000495955 SMARCA2P51531 1590 aa14.92□□□□□ -0.02
GAPVD1-219ENST00000495955 FBLN2P98095 1184 aa14.91□□□□□ -0.02
GAPVD1-219ENST00000495955 ERCC6Q03468 1493 aa14.85□□□□□ -0.03
GAPVD1-219ENST00000495955 SMARCA4P51532 1647 aa14.83□□□□□ -0.04
GAPVD1-219ENST00000495955 ATAD2BQ9ULI0 1458 aa14.81□□□□□ -0.04
GAPVD1-219ENST00000495955 EIF4G1Q04637 1599 aaKnown RBP14.8□□□□□ -0.04
GAPVD1-219ENST00000495955 WIZO95785 1651 aa14.79□□□□□ -0.04
GAPVD1-219ENST00000495955 BICRAQ9NZM4 1560 aa14.76□□□□□ -0.05
GAPVD1-219ENST00000495955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.73□□□□□ -0.05
GAPVD1-219ENST00000495955 HNRNPUL2Q1KMD3 747 aaKnown RBP14.73□□□□□ -0.05
GAPVD1-219ENST00000495955 LOC105371045A0A1W2PR82 267 aa14.73□□□□□ -0.05
GAPVD1-219ENST00000495955 CCDC88BA6NC98 1476 aa14.7□□□□□ -0.06
GAPVD1-219ENST00000495955 TOP2AP11388 1531 aaKnown RBP14.69□□□□□ -0.06
GAPVD1-219ENST00000495955 UNC13AQ9UPW8 1703 aa14.67□□□□□ -0.06
GAPVD1-219ENST00000495955 CC2D2AQ9P2K1 1620 aa14.67□□□□□ -0.06
GAPVD1-219ENST00000495955 PDS5BQ9NTI5 1447 aa14.65□□□□□ -0.06
GAPVD1-219ENST00000495955 DNAJC5BQ9UF47 199 aa14.62□□□□□ -0.07
GAPVD1-219ENST00000495955 CSRNP3Q8WYN3 585 aa14.62□□□□□ -0.07
GAPVD1-219ENST00000495955 NCAPD3P42695 1498 aa14.61□□□□□ -0.07
GAPVD1-219ENST00000495955 CADPSQ9ULU8 1353 aa14.61□□□□□ -0.07
GAPVD1-219ENST00000495955 WRNQ14191 1432 aaPredicted RBP eCLIP14.6□□□□□ -0.077e-6■■■■■ 39.7
GAPVD1-219ENST00000495955 CHMP7Q8WUX9 453 aaPredicted RBP14.56□□□□□ -0.08
GAPVD1-219ENST00000495955 PPARGC1BQ86YN6 1023 aaKnown RBP14.56□□□□□ -0.08
GAPVD1-219ENST00000495955 P3H3Q8IVL6 736 aa14.51□□□□□ -0.09
GAPVD1-219ENST00000495955 CEP164Q9UPV0 1460 aa14.47□□□□□ -0.09
GAPVD1-219ENST00000495955 MYT1LQ9UL68 1186 aa14.47□□□□□ -0.09
GAPVD1-219ENST00000495955 FANCD2Q9BXW9 1451 aa14.44□□□□□ -0.1
GAPVD1-219ENST00000495955 HMGXB3Q12766 1538 aa14.43□□□□□ -0.1
GAPVD1-219ENST00000495955 ARID3CA6NKF2 412 aa14.43□□□□□ -0.1
GAPVD1-219ENST00000495955 ABCC8Q09428 1581 aa14.41□□□□□ -0.1
GAPVD1-219ENST00000495955 KIF27Q86VH2 1401 aa14.41□□□□□ -0.1
GAPVD1-219ENST00000495955 SOGA1O94964 1423 aa14.38□□□□□ -0.11
GAPVD1-219ENST00000495955 NESP48681 1621 aa14.36□□□□□ -0.11
GAPVD1-219ENST00000495955 PCGF6Q9BYE7 350 aa14.36□□□□□ -0.11
GAPVD1-219ENST00000495955 CUX2O14529 1486 aa14.36□□□□□ -0.11
GAPVD1-219ENST00000495955 ITGAEP38570 1179 aa14.34□□□□□ -0.11
GAPVD1-219ENST00000495955 TDRD9Q8NDG6 1382 aaKnown RBP14.33□□□□□ -0.12
GAPVD1-219ENST00000495955 NPM1P06748 294 aaKnown RBP eCLIP14.3□□□□□ -0.12
GAPVD1-219ENST00000495955 EEA1Q15075 1411 aa14.29□□□□□ -0.12
GAPVD1-219ENST00000495955 CFTRP13569 1480 aa14.26□□□□□ -0.13
GAPVD1-219ENST00000495955 CARMIL1Q5VZK9 1371 aa14.23□□□□□ -0.13
GAPVD1-219ENST00000495955 PEG3Q9GZU2 1588 aa14.21□□□□□ -0.13
GAPVD1-219ENST00000495955 FAM50AQ14320 339 aaKnown RBP14.21□□□□□ -0.13
GAPVD1-219ENST00000495955 CDK11AQ9UQ88 783 aaPredicted RBP14.21□□□□□ -0.13
GAPVD1-219ENST00000495955 GOLGA3Q08378 1498 aa14.19□□□□□ -0.14
GAPVD1-219ENST00000495955 MRC2Q9UBG0 1479 aa14.19□□□□□ -0.14
GAPVD1-219ENST00000495955 FGD5Q6ZNL6 1462 aa14.17□□□□□ -0.14
GAPVD1-219ENST00000495955 LAMC3Q9Y6N6 1575 aa14.16□□□□□ -0.14
GAPVD1-219ENST00000495955 RAD54L2Q9Y4B4 1467 aa14.15□□□□□ -0.14
GAPVD1-219ENST00000495955 CCER1Q8TC90 406 aaPredicted RBP14.13□□□□□ -0.15
GAPVD1-219ENST00000495955 ZNF777Q9ULD5 760 aaPredicted RBP14.13□□□□□ -0.15
GAPVD1-219ENST00000495955 TRIM26Q12899 539 aaPredicted RBP14.12□□□□□ -0.15
GAPVD1-219ENST00000495955 CLIP1P30622 1438 aa14.12□□□□□ -0.15
GAPVD1-219ENST00000495955 AQRO60306 1485 aaKnown RBP eCLIP14.08□□□□□ -0.162e-6■■■■■ 28.9
GAPVD1-219ENST00000495955 KCNH8Q96L42 1107 aa14.06□□□□□ -0.16
GAPVD1-219ENST00000495955 GAPVD1Q14C86 1478 aa14.06□□□□□ -0.16
GAPVD1-219ENST00000495955 TOPBP1Q92547 1522 aa14.06□□□□□ -0.16
GAPVD1-219ENST00000495955 OSCARQ8IYS5 282 aa14.04□□□□□ -0.16
GAPVD1-219ENST00000495955 CEP162Q5TB80 1403 aa14.02□□□□□ -0.16
GAPVD1-219ENST00000495955 TNIKQ9UKE5 1360 aa14.02□□□□□ -0.17
GAPVD1-219ENST00000495955 IFT140Q96RY7 1462 aa14.02□□□□□ -0.17
GAPVD1-219ENST00000495955 RAPGEF2Q9Y4G8 1499 aa14.01□□□□□ -0.17
GAPVD1-219ENST00000495955 PLEKHD1A6NEE1 506 aa14□□□□□ -0.17
GAPVD1-219ENST00000495955 CUX1P39880 1505 aa13.99□□□□□ -0.17
GAPVD1-219ENST00000495955 RUSC2Q8N2Y8 1516 aa13.99□□□□□ -0.17
GAPVD1-219ENST00000495955 DNMBPQ6XZF7 1577 aa13.99□□□□□ -0.17
GAPVD1-219ENST00000495955 MTUS2Q5JR59 1369 aa13.99□□□□□ -0.17
GAPVD1-219ENST00000495955 CARMIL2Q6F5E8 1435 aa13.99□□□□□ -0.17
GAPVD1-219ENST00000495955 POLA1P09884 1462 aaPredicted RBP13.98□□□□□ -0.17
GAPVD1-219ENST00000495955 SYNJ1O43426 1573 aa13.98□□□□□ -0.17
GAPVD1-219ENST00000495955 TRIM52Q96A61 297 aa13.98□□□□□ -0.17
GAPVD1-219ENST00000495955 JPH4Q96JJ6 628 aa13.96□□□□□ -0.17
GAPVD1-219ENST00000495955 TRHP20396 242 aaPredicted RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms