RNA–Protein interactions for RNA: ENST00000495705.5

LMO4-204, Transcript of LIM domain only 4, humanhuman

TSL 3

Gene LMO4, Length 565 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-204ENST00000495705 NISCHQ9Y2I1 1504 aa48.32■■■■■ 5.33
LMO4-204ENST00000495705 CCDC180Q9P1Z9 1646 aa42.94■■■■■ 4.46
LMO4-204ENST00000495705 ABCC9O60706 1549 aa41.65■■■■■ 4.26
LMO4-204ENST00000495705 ZCCHC6Q5VYS8 1495 aaKnown RBP40.32■■■■■ 4.05
LMO4-204ENST00000495705 NACADO15069 1562 aa40.27■■■■■ 4.04
LMO4-204ENST00000495705 RB1CC1Q8TDY2 1594 aa40.27■■■■■ 4.04
LMO4-204ENST00000495705 DCAF8L2P0C7V8 631 aa40.16■■■■■ 4.02
LMO4-204ENST00000495705 MYO15BQ96JP2 1530 aa40.14■■■■■ 4.02
LMO4-204ENST00000495705 DCAF1Q9Y4B6 1507 aa40.05■■■■■ 4
LMO4-204ENST00000495705 UNC13AQ9UPW8 1703 aa39.36■■■■□ 3.89
LMO4-204ENST00000495705 SCRIBQ14160 1630 aa39.12■■■■□ 3.85
LMO4-204ENST00000495705 BICRAQ9NZM4 1560 aa38.99■■■■□ 3.83
LMO4-204ENST00000495705 PABPN1Q86U42 306 aaKnown RBP eCLIP38.9■■■■□ 3.82
LMO4-204ENST00000495705 SHROOM4Q9ULL8 1493 aa38.71■■■■□ 3.79
LMO4-204ENST00000495705 EIF4G1Q04637 1599 aaKnown RBP37.96■■■■□ 3.67
LMO4-204ENST00000495705 DNAJC5BQ9UF47 199 aa37.92■■■■□ 3.66
LMO4-204ENST00000495705 CC2D2AQ9P2K1 1620 aa37.74■■■■□ 3.63
LMO4-204ENST00000495705 CECR2Q9BXF3 1484 aa37.56■■■■□ 3.6
LMO4-204ENST00000495705 SMARCA4P51532 1647 aa37.47■■■■□ 3.59
LMO4-204ENST00000495705 BAZ1AQ9NRL2 1556 aaPredicted RBP37.47■■■■□ 3.59
LMO4-204ENST00000495705 MROH2BQ7Z745 1585 aa37.21■■■■□ 3.55
LMO4-204ENST00000495705 SMARCA2P51531 1590 aa37.2■■■■□ 3.55
LMO4-204ENST00000495705 ATAD2BQ9ULI0 1458 aa37.16■■■■□ 3.54
LMO4-204ENST00000495705 NCAPD3P42695 1498 aa37.12■■■■□ 3.53
LMO4-204ENST00000495705 PEG3Q9GZU2 1588 aa37.12■■■■□ 3.53
LMO4-204ENST00000495705 HMGXB3Q12766 1538 aa37.01■■■■□ 3.52
LMO4-204ENST00000495705 BAZ1BQ9UIG0 1483 aaKnown RBP36.89■■■■□ 3.5
LMO4-204ENST00000495705 RSF1Q96T23 1441 aaPredicted RBP36.86■■■■□ 3.49
LMO4-204ENST00000495705 WIZO95785 1651 aa36.84■■■■□ 3.49
LMO4-204ENST00000495705 TOP2AP11388 1531 aaKnown RBP36.5■■■■□ 3.43
LMO4-204ENST00000495705 LAMC3Q9Y6N6 1575 aa36.15■■■■□ 3.38
LMO4-204ENST00000495705 NESP48681 1621 aa36.11■■■■□ 3.37
LMO4-204ENST00000495705 SUPT5HO00267 1087 aaKnown RBP36.05■■■■□ 3.36
LMO4-204ENST00000495705 CADPSQ9ULU8 1353 aa36.03■■■■□ 3.36
LMO4-204ENST00000495705 CCDC88BA6NC98 1476 aa36.01■■■■□ 3.36
LMO4-204ENST00000495705 ERCC6Q03468 1493 aa35.93■■■■□ 3.34
LMO4-204ENST00000495705 CFTRP13569 1480 aa35.89■■■■□ 3.34
LMO4-204ENST00000495705 PDS5BQ9NTI5 1447 aa35.87■■■■□ 3.33
LMO4-204ENST00000495705 KIF21AQ7Z4S6 1674 aa35.77■■■■□ 3.32
LMO4-204ENST00000495705 PRDM2Q13029 1718 aa35.74■■■■□ 3.31
LMO4-204ENST00000495705 FANCD2Q9BXW9 1451 aa35.63■■■■□ 3.29
LMO4-204ENST00000495705 CEP164Q9UPV0 1460 aa35.6■■■■□ 3.29
LMO4-204ENST00000495705 THOC2Q8NI27 1593 aaKnown RBP35.59■■■■□ 3.29
LMO4-204ENST00000495705 CUX2O14529 1486 aa35.5■■■■□ 3.27
LMO4-204ENST00000495705 MRC2Q9UBG0 1479 aa35.48■■■■□ 3.27
LMO4-204ENST00000495705 WDR62O43379 1518 aa35.37■■■■□ 3.25
LMO4-204ENST00000495705 URB2Q14146 1524 aaKnown RBP35.25■■■■□ 3.23
LMO4-204ENST00000495705 ABCC8Q09428 1581 aa35.16■■■■□ 3.22
LMO4-204ENST00000495705 DNMBPQ6XZF7 1577 aa35.11■■■■□ 3.21
LMO4-204ENST00000495705 TOPBP1Q92547 1522 aa35.1■■■■□ 3.21
LMO4-204ENST00000495705 CUX1P39880 1505 aa34.91■■■■□ 3.18
LMO4-204ENST00000495705 IFT140Q96RY7 1462 aa34.84■■■■□ 3.17
LMO4-204ENST00000495705 POLA1P09884 1462 aaPredicted RBP34.82■■■■□ 3.16
LMO4-204ENST00000495705 WRNQ14191 1432 aaPredicted RBP eCLIP34.79■■■■□ 3.16
LMO4-204ENST00000495705 FGD5Q6ZNL6 1462 aa34.77■■■■□ 3.16
LMO4-204ENST00000495705 BIVM-ERCC5R4GMW8 1640 aa34.73■■■■□ 3.15
LMO4-204ENST00000495705 TOP2BQ02880 1626 aa34.72■■■■□ 3.15
LMO4-204ENST00000495705 TARBP1Q13395 1621 aaKnown RBP34.71■■■■□ 3.15
LMO4-204ENST00000495705 SYNJ1O43426 1573 aa34.69■■■■□ 3.14
LMO4-204ENST00000495705 SOGA1O94964 1423 aa34.65■■■■□ 3.14
LMO4-204ENST00000495705 RAD54L2Q9Y4B4 1467 aa34.62■■■■□ 3.13
LMO4-204ENST00000495705 ZNF608Q9ULD9 1512 aaPredicted RBP34.6■■■■□ 3.13
LMO4-204ENST00000495705 EIF4G3O43432 1585 aaKnown RBP34.55■■■■□ 3.12
LMO4-204ENST00000495705 WDR97A6NE52 1622 aa34.53■■■■□ 3.12
LMO4-204ENST00000495705 ABCA10Q8WWZ4 1543 aa34.46■■■■□ 3.11
LMO4-204ENST00000495705 AQRO60306 1485 aaKnown RBP eCLIP34.43■■■■□ 3.1
LMO4-204ENST00000495705 TDRD9Q8NDG6 1382 aaKnown RBP34.39■■■■□ 3.1
LMO4-204ENST00000495705 ABCA5Q8WWZ7 1642 aa34.32■■■■□ 3.08
LMO4-204ENST00000495705 GAPVD1Q14C86 1478 aa34.28■■■■□ 3.08
LMO4-204ENST00000495705 GRIN2BQ13224 1484 aa34.26■■■■□ 3.07
LMO4-204ENST00000495705 PBRM1Q86U86 1689 aa34.25■■■■□ 3.07
LMO4-204ENST00000495705 SNAPC4Q5SXM2 1469 aa34.16■■■■□ 3.06
LMO4-204ENST00000495705 MAGI1Q96QZ7 1491 aaPredicted RBP34.16■■■■□ 3.06
LMO4-204ENST00000495705 CHD1O14646 1710 aa34.07■■■■□ 3.05
LMO4-204ENST00000495705 TRIM41Q8WV44 630 aa34.07■■■■□ 3.04
LMO4-204ENST00000495705 ERICH3Q5RHP9 1530 aa34.07■■■■□ 3.04
LMO4-204ENST00000495705 KIF27Q86VH2 1401 aa34.05■■■■□ 3.04
LMO4-204ENST00000495705 DNAJC5Q9H3Z4 198 aa34.03■■■■□ 3.04
LMO4-204ENST00000495705 SYNJ2O15056 1496 aa34.01■■■■□ 3.03
LMO4-204ENST00000495705 OSCARQ8IYS5 282 aa34■■■■□ 3.03
LMO4-204ENST00000495705 ADAMTS12P58397 1594 aa33.98■■■■□ 3.03
LMO4-204ENST00000495705 FBLN2P98095 1184 aa33.95■■■■□ 3.03
LMO4-204ENST00000495705 CHMP7Q8WUX9 453 aaPredicted RBP33.93■■■■□ 3.02
LMO4-204ENST00000495705 FHAD1B1AJZ9 1412 aa33.9■■■■□ 3.02
LMO4-204ENST00000495705 CUL7Q14999 1698 aa33.84■■■■□ 3.01
LMO4-204ENST00000495705 IGF1RP08069 1367 aa33.83■■■■□ 3.01
LMO4-204ENST00000495705 GRIN2AQ12879 1464 aa33.82■■■■□ 3
LMO4-204ENST00000495705 CHIC1Q5VXU3 224 aa33.79■■■■□ 3
LMO4-204ENST00000495705 RUSC2Q8N2Y8 1516 aa33.74■■■□□ 2.99
LMO4-204ENST00000495705 CLASP1Q7Z460 1538 aa33.69■■■□□ 2.98
LMO4-204ENST00000495705 NUP160Q12769 1436 aa33.65■■■□□ 2.98
LMO4-204ENST00000495705 CARMIL1Q5VZK9 1371 aa33.65■■■□□ 2.98
LMO4-204ENST00000495705 CEP170Q5SW79 1584 aa33.63■■■□□ 2.97
LMO4-204ENST00000495705 EEA1Q15075 1411 aa33.59■■■□□ 2.97
LMO4-204ENST00000495705 RAPGEF2Q9Y4G8 1499 aa33.51■■■□□ 2.96
LMO4-204ENST00000495705 ARHGEF11O15085 1522 aa33.49■■■□□ 2.95
LMO4-204ENST00000495705 RIMBP3CA6NJZ7 1639 aa33.47■■■□□ 2.95
LMO4-204ENST00000495705 RIMBP3BA6NNM3 1639 aa33.47■■■□□ 2.95
LMO4-204ENST00000495705 RIMBP3Q9UFD9 1639 aa33.47■■■□□ 2.95
LMO4-204ENST00000495705 PRXQ9BXM0 1461 aa33.44■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms