RNA–Protein interactions for RNA: ENST00000495327.1

RBM28-208, Transcript of RNA binding motif protein 28, humanhuman

TSL 2

Gene RBM28, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM28-208ENST00000495327 NISCHQ9Y2I1 1504 aa32.98■■■□□ 2.87
RBM28-208ENST00000495327 CCDC180Q9P1Z9 1646 aa29.56■■■□□ 2.32
RBM28-208ENST00000495327 ABCC9O60706 1549 aa28.9■■■□□ 2.22
RBM28-208ENST00000495327 RB1CC1Q8TDY2 1594 aa27.82■■■□□ 2.04
RBM28-208ENST00000495327 NACADO15069 1562 aa27.74■■■□□ 2.03
RBM28-208ENST00000495327 MYO15BQ96JP2 1530 aa27.56■■■□□ 2
RBM28-208ENST00000495327 ZCCHC6Q5VYS8 1495 aaKnown RBP27.47■■□□□ 1.99
RBM28-208ENST00000495327 DCAF8L2P0C7V8 631 aa27.38■■□□□ 1.97
RBM28-208ENST00000495327 DCAF1Q9Y4B6 1507 aa27.35■■□□□ 1.97
RBM28-208ENST00000495327 UNC13AQ9UPW8 1703 aa27.29■■□□□ 1.96
RBM28-208ENST00000495327 BICRAQ9NZM4 1560 aa27■■□□□ 1.91
RBM28-208ENST00000495327 PABPN1Q86U42 306 aaKnown RBP eCLIP26.87■■□□□ 1.89
RBM28-208ENST00000495327 SCRIBQ14160 1630 aa26.83■■□□□ 1.88
RBM28-208ENST00000495327 SHROOM4Q9ULL8 1493 aa26.76■■□□□ 1.87
RBM28-208ENST00000495327 DNAJC5BQ9UF47 199 aa26.62■■□□□ 1.85
RBM28-208ENST00000495327 EIF4G1Q04637 1599 aaKnown RBP26.29■■□□□ 1.8
RBM28-208ENST00000495327 CC2D2AQ9P2K1 1620 aa26.22■■□□□ 1.79
RBM28-208ENST00000495327 CECR2Q9BXF3 1484 aa26.02■■□□□ 1.76
RBM28-208ENST00000495327 SMARCA4P51532 1647 aa25.69■■□□□ 1.7
RBM28-208ENST00000495327 BAZ1AQ9NRL2 1556 aaPredicted RBP25.61■■□□□ 1.69
RBM28-208ENST00000495327 NCAPD3P42695 1498 aa25.55■■□□□ 1.68
RBM28-208ENST00000495327 SMARCA2P51531 1590 aa25.54■■□□□ 1.68
RBM28-208ENST00000495327 ATAD2BQ9ULI0 1458 aa25.53■■□□□ 1.68
RBM28-208ENST00000495327 HMGXB3Q12766 1538 aa25.49■■□□□ 1.67
RBM28-208ENST00000495327 PEG3Q9GZU2 1588 aa25.48■■□□□ 1.67
RBM28-208ENST00000495327 MROH2BQ7Z745 1585 aa25.39■■□□□ 1.65
RBM28-208ENST00000495327 BAZ1BQ9UIG0 1483 aaKnown RBP25.32■■□□□ 1.64
RBM28-208ENST00000495327 WIZO95785 1651 aa25.14■■□□□ 1.62
RBM28-208ENST00000495327 RSF1Q96T23 1441 aaPredicted RBP25■■□□□ 1.59
RBM28-208ENST00000495327 LAMC3Q9Y6N6 1575 aa24.98■■□□□ 1.59
RBM28-208ENST00000495327 NESP48681 1621 aa24.97■■□□□ 1.59
RBM28-208ENST00000495327 ERCC6Q03468 1493 aa24.94■■□□□ 1.58
RBM28-208ENST00000495327 TOP2AP11388 1531 aaKnown RBP24.88■■□□□ 1.57
RBM28-208ENST00000495327 CUX2O14529 1486 aa24.83■■□□□ 1.56
RBM28-208ENST00000495327 KIF21AQ7Z4S6 1674 aa24.79■■□□□ 1.56
RBM28-208ENST00000495327 THOC2Q8NI27 1593 aaKnown RBP24.76■■□□□ 1.55
RBM28-208ENST00000495327 CADPSQ9ULU8 1353 aa24.75■■□□□ 1.55
RBM28-208ENST00000495327 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
RBM28-208ENST00000495327 CFTRP13569 1480 aa24.61■■□□□ 1.53
RBM28-208ENST00000495327 PRDM2Q13029 1718 aa24.6■■□□□ 1.53
RBM28-208ENST00000495327 MRC2Q9UBG0 1479 aa24.52■■□□□ 1.52
RBM28-208ENST00000495327 CCDC88BA6NC98 1476 aa24.51■■□□□ 1.51
RBM28-208ENST00000495327 CEP164Q9UPV0 1460 aa24.51■■□□□ 1.51
RBM28-208ENST00000495327 FANCD2Q9BXW9 1451 aa24.5■■□□□ 1.51
RBM28-208ENST00000495327 WDR62O43379 1518 aa24.5■■□□□ 1.51
RBM28-208ENST00000495327 URB2Q14146 1524 aaKnown RBP24.28■■□□□ 1.48
RBM28-208ENST00000495327 DNAJC5Q9H3Z4 198 aa24.17■■□□□ 1.46
RBM28-208ENST00000495327 TOPBP1Q92547 1522 aa24.1■■□□□ 1.45
RBM28-208ENST00000495327 ABCC8Q09428 1581 aa24.1■■□□□ 1.45
RBM28-208ENST00000495327 DNMBPQ6XZF7 1577 aa24.1■■□□□ 1.45
RBM28-208ENST00000495327 SUPT5HO00267 1087 aaKnown RBP24.05■■□□□ 1.44
RBM28-208ENST00000495327 IFT140Q96RY7 1462 aa24■■□□□ 1.43
RBM28-208ENST00000495327 TARBP1Q13395 1621 aaKnown RBP23.92■■□□□ 1.42
RBM28-208ENST00000495327 POLA1P09884 1462 aaPredicted RBP23.88■■□□□ 1.41
RBM28-208ENST00000495327 EIF4G3O43432 1585 aaKnown RBP23.87■■□□□ 1.41
RBM28-208ENST00000495327 ZNF608Q9ULD9 1512 aaPredicted RBP23.87■■□□□ 1.41
RBM28-208ENST00000495327 CUX1P39880 1505 aa23.84■■□□□ 1.41
RBM28-208ENST00000495327 FGD5Q6ZNL6 1462 aa23.79■■□□□ 1.4
RBM28-208ENST00000495327 WDR97A6NE52 1622 aa23.78■■□□□ 1.4
RBM28-208ENST00000495327 RAD54L2Q9Y4B4 1467 aa23.73■■□□□ 1.39
RBM28-208ENST00000495327 SOGA1O94964 1423 aa23.71■■□□□ 1.39
RBM28-208ENST00000495327 BIVM-ERCC5R4GMW8 1640 aa23.68■■□□□ 1.38
RBM28-208ENST00000495327 AQRO60306 1485 aaKnown RBP eCLIP23.68■■□□□ 1.381e-6■■■■□ 19.6
RBM28-208ENST00000495327 TOP2BQ02880 1626 aa23.64■■□□□ 1.38
RBM28-208ENST00000495327 CHD1O14646 1710 aa23.63■■□□□ 1.37
RBM28-208ENST00000495327 OSCARQ8IYS5 282 aa23.61■■□□□ 1.37
RBM28-208ENST00000495327 SYNJ1O43426 1573 aa23.6■■□□□ 1.37
RBM28-208ENST00000495327 WRNQ14191 1432 aaPredicted RBP eCLIP23.59■■□□□ 1.37
RBM28-208ENST00000495327 PBRM1Q86U86 1689 aa23.57■■□□□ 1.36
RBM28-208ENST00000495327 TDRD9Q8NDG6 1382 aaKnown RBP23.57■■□□□ 1.36
RBM28-208ENST00000495327 ABCA10Q8WWZ4 1543 aa23.57■■□□□ 1.36
RBM28-208ENST00000495327 ABCA5Q8WWZ7 1642 aa23.56■■□□□ 1.36
RBM28-208ENST00000495327 GRIN2BQ13224 1484 aa23.51■■□□□ 1.35
RBM28-208ENST00000495327 SNAPC4Q5SXM2 1469 aa23.51■■□□□ 1.35
RBM28-208ENST00000495327 MAGI1Q96QZ7 1491 aaPredicted RBP23.51■■□□□ 1.35
RBM28-208ENST00000495327 GAPVD1Q14C86 1478 aa23.48■■□□□ 1.35
RBM28-208ENST00000495327 RIMBP3CA6NJZ7 1639 aa23.41■■□□□ 1.34
RBM28-208ENST00000495327 RIMBP3BA6NNM3 1639 aa23.41■■□□□ 1.34
RBM28-208ENST00000495327 RIMBP3Q9UFD9 1639 aa23.41■■□□□ 1.34
RBM28-208ENST00000495327 SYNJ2O15056 1496 aa23.41■■□□□ 1.34
RBM28-208ENST00000495327 ARHGEF11O15085 1522 aa23.35■■□□□ 1.33
RBM28-208ENST00000495327 CLASP1Q7Z460 1538 aa23.34■■□□□ 1.33
RBM28-208ENST00000495327 ADAMTS12P58397 1594 aa23.34■■□□□ 1.33
RBM28-208ENST00000495327 FBLN2P98095 1184 aa23.33■■□□□ 1.33
RBM28-208ENST00000495327 ERICH3Q5RHP9 1530 aa23.31■■□□□ 1.32
RBM28-208ENST00000495327 CHMP7Q8WUX9 453 aaPredicted RBP23.28■■□□□ 1.32
RBM28-208ENST00000495327 GRIN2AQ12879 1464 aa23.24■■□□□ 1.31
RBM28-208ENST00000495327 TRIM41Q8WV44 630 aa23.22■■□□□ 1.31
RBM28-208ENST00000495327 FHAD1B1AJZ9 1412 aa23.2■■□□□ 1.3
RBM28-208ENST00000495327 CEP170Q5SW79 1584 aa23.15■■□□□ 1.3
RBM28-208ENST00000495327 ARAP1Q96P48 1450 aa23.15■■□□□ 1.3
RBM28-208ENST00000495327 NUP160Q12769 1436 aa23.14■■□□□ 1.29
RBM28-208ENST00000495327 CUL7Q14999 1698 aa23.11■■□□□ 1.29
RBM28-208ENST00000495327 KIF27Q86VH2 1401 aa23.1■■□□□ 1.29
RBM28-208ENST00000495327 SHROOM2Q13796 1616 aa23.07■■□□□ 1.28
RBM28-208ENST00000495327 RUSC2Q8N2Y8 1516 aa23.01■■□□□ 1.27
RBM28-208ENST00000495327 CYB5RLQ6IPT4 315 aa22.99■■□□□ 1.27
RBM28-208ENST00000495327 IGF1RP08069 1367 aa22.99■■□□□ 1.27
RBM28-208ENST00000495327 ERCC6L2Q5T890 1561 aa22.95■■□□□ 1.26
RBM28-208ENST00000495327 CARMIL1Q5VZK9 1371 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms