RNA–Protein interactions for RNA: ENST00000494274.5

RBM39-239, Transcript of RNA binding motif protein 39, humanhuman

TSL 3

Gene RBM39, Length 704 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-239ENST00000494274 NISCHQ9Y2I1 1504 aa17.51■□□□□ 0.39
RBM39-239ENST00000494274 ABCC9O60706 1549 aa15.49■□□□□ 0.07
RBM39-239ENST00000494274 CCDC180Q9P1Z9 1646 aa15.44■□□□□ 0.06
RBM39-239ENST00000494274 DCAF8L2P0C7V8 631 aa14.98□□□□□ -0.01
RBM39-239ENST00000494274 RB1CC1Q8TDY2 1594 aa14.72□□□□□ -0.05
RBM39-239ENST00000494274 NACADO15069 1562 aa14.67□□□□□ -0.06
RBM39-239ENST00000494274 PABPN1Q86U42 306 aaKnown RBP eCLIP14.58□□□□□ -0.081e-74■□□□□ 8.1
RBM39-239ENST00000494274 ZCCHC6Q5VYS8 1495 aaKnown RBP14.52□□□□□ -0.08
RBM39-239ENST00000494274 MYO15BQ96JP2 1530 aa14.51□□□□□ -0.09
RBM39-239ENST00000494274 DNAJC5BQ9UF47 199 aa14.43□□□□□ -0.1
RBM39-239ENST00000494274 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
RBM39-239ENST00000494274 BICRAQ9NZM4 1560 aa14.26□□□□□ -0.13
RBM39-239ENST00000494274 SCRIBQ14160 1630 aa14.23□□□□□ -0.13
RBM39-239ENST00000494274 UNC13AQ9UPW8 1703 aa14.21□□□□□ -0.14
RBM39-239ENST00000494274 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
RBM39-239ENST00000494274 EIF4G1Q04637 1599 aaKnown RBP13.92□□□□□ -0.18
RBM39-239ENST00000494274 CECR2Q9BXF3 1484 aa13.92□□□□□ -0.18
RBM39-239ENST00000494274 CC2D2AQ9P2K1 1620 aa13.9□□□□□ -0.19
RBM39-239ENST00000494274 NCAPD3P42695 1498 aa13.61□□□□□ -0.23
RBM39-239ENST00000494274 ATAD2BQ9ULI0 1458 aa13.6□□□□□ -0.23
RBM39-239ENST00000494274 BAZ1AQ9NRL2 1556 aaPredicted RBP13.55□□□□□ -0.24
RBM39-239ENST00000494274 SMARCA4P51532 1647 aa13.55□□□□□ -0.24
RBM39-239ENST00000494274 SMARCA2P51531 1590 aa13.52□□□□□ -0.25
RBM39-239ENST00000494274 MROH2BQ7Z745 1585 aa13.51□□□□□ -0.25
RBM39-239ENST00000494274 BAZ1BQ9UIG0 1483 aaKnown RBP13.48□□□□□ -0.25
RBM39-239ENST00000494274 HMGXB3Q12766 1538 aa13.44□□□□□ -0.26
RBM39-239ENST00000494274 PEG3Q9GZU2 1588 aa13.39□□□□□ -0.27
RBM39-239ENST00000494274 ERCC6Q03468 1493 aa13.37□□□□□ -0.27
RBM39-239ENST00000494274 RSF1Q96T23 1441 aaPredicted RBP13.36□□□□□ -0.27
RBM39-239ENST00000494274 NESP48681 1621 aa13.35□□□□□ -0.27
RBM39-239ENST00000494274 WIZO95785 1651 aa13.3□□□□□ -0.28
RBM39-239ENST00000494274 CADPSQ9ULU8 1353 aa13.26□□□□□ -0.29
RBM39-239ENST00000494274 PDS5BQ9NTI5 1447 aa13.22□□□□□ -0.29
RBM39-239ENST00000494274 CUX2O14529 1486 aa13.19□□□□□ -0.3
RBM39-239ENST00000494274 LAMC3Q9Y6N6 1575 aa13.19□□□□□ -0.3
RBM39-239ENST00000494274 TOP2AP11388 1531 aaKnown RBP13.15□□□□□ -0.3
RBM39-239ENST00000494274 SUPT5HO00267 1087 aaKnown RBP13.1□□□□□ -0.31
RBM39-239ENST00000494274 CFTRP13569 1480 aa13.1□□□□□ -0.31
RBM39-239ENST00000494274 DNAJC5Q9H3Z4 198 aa13.09□□□□□ -0.31
RBM39-239ENST00000494274 CCDC88BA6NC98 1476 aa13.09□□□□□ -0.31
RBM39-239ENST00000494274 FANCD2Q9BXW9 1451 aa13.07□□□□□ -0.32
RBM39-239ENST00000494274 MRC2Q9UBG0 1479 aa13.05□□□□□ -0.32
RBM39-239ENST00000494274 CEP164Q9UPV0 1460 aa13.04□□□□□ -0.32
RBM39-239ENST00000494274 THOC2Q8NI27 1593 aaKnown RBP13.02□□□□□ -0.33
RBM39-239ENST00000494274 KIF21AQ7Z4S6 1674 aa13.02□□□□□ -0.33
RBM39-239ENST00000494274 WDR62O43379 1518 aa12.94□□□□□ -0.34
RBM39-239ENST00000494274 URB2Q14146 1524 aaKnown RBP12.93□□□□□ -0.34
RBM39-239ENST00000494274 TOPBP1Q92547 1522 aa12.82□□□□□ -0.36
RBM39-239ENST00000494274 OSCARQ8IYS5 282 aa12.8□□□□□ -0.36
RBM39-239ENST00000494274 ABCC8Q09428 1581 aa12.8□□□□□ -0.36
RBM39-239ENST00000494274 IFT140Q96RY7 1462 aa12.78□□□□□ -0.36
RBM39-239ENST00000494274 ZNF608Q9ULD9 1512 aaPredicted RBP12.76□□□□□ -0.37
RBM39-239ENST00000494274 DNMBPQ6XZF7 1577 aa12.74□□□□□ -0.37
RBM39-239ENST00000494274 SOGA1O94964 1423 aa12.73□□□□□ -0.37
RBM39-239ENST00000494274 AQRO60306 1485 aaKnown RBP eCLIP12.72□□□□□ -0.371e-10■■■■□ 22.1
RBM39-239ENST00000494274 TDRD9Q8NDG6 1382 aaKnown RBP12.72□□□□□ -0.37
RBM39-239ENST00000494274 FBLN2P98095 1184 aa12.72□□□□□ -0.37
RBM39-239ENST00000494274 RAD54L2Q9Y4B4 1467 aa12.72□□□□□ -0.37
RBM39-239ENST00000494274 POLA1P09884 1462 aaPredicted RBP12.71□□□□□ -0.38
RBM39-239ENST00000494274 PRDM2Q13029 1718 aa12.7□□□□□ -0.38
RBM39-239ENST00000494274 TRIM41Q8WV44 630 aa12.68□□□□□ -0.38
RBM39-239ENST00000494274 FGD5Q6ZNL6 1462 aa12.67□□□□□ -0.38
RBM39-239ENST00000494274 CUX1P39880 1505 aa12.66□□□□□ -0.38
RBM39-239ENST00000494274 CHMP7Q8WUX9 453 aaPredicted RBP12.62□□□□□ -0.39
RBM39-239ENST00000494274 TARBP1Q13395 1621 aaKnown RBP12.61□□□□□ -0.39
RBM39-239ENST00000494274 WRNQ14191 1432 aaPredicted RBP eCLIP12.6□□□□□ -0.39
RBM39-239ENST00000494274 EIF4G3O43432 1585 aaKnown RBP12.59□□□□□ -0.39
RBM39-239ENST00000494274 GRIN2BQ13224 1484 aa12.54□□□□□ -0.4
RBM39-239ENST00000494274 GAPVD1Q14C86 1478 aa12.53□□□□□ -0.4
RBM39-239ENST00000494274 SNAPC4Q5SXM2 1469 aa12.53□□□□□ -0.4
RBM39-239ENST00000494274 CYB5RLQ6IPT4 315 aa12.51□□□□□ -0.41
RBM39-239ENST00000494274 ABCA10Q8WWZ4 1543 aa12.51□□□□□ -0.41
RBM39-239ENST00000494274 SYNJ1O43426 1573 aa12.48□□□□□ -0.41
RBM39-239ENST00000494274 MAGI1Q96QZ7 1491 aaPredicted RBP12.47□□□□□ -0.41
RBM39-239ENST00000494274 TOP2BQ02880 1626 aa12.47□□□□□ -0.41
RBM39-239ENST00000494274 SYNJ2O15056 1496 aa12.46□□□□□ -0.41
RBM39-239ENST00000494274 WDR97A6NE52 1622 aa12.44□□□□□ -0.42
RBM39-239ENST00000494274 ARHGEF11O15085 1522 aa12.43□□□□□ -0.42
RBM39-239ENST00000494274 BIVM-ERCC5R4GMW8 1640 aa12.4□□□□□ -0.42
RBM39-239ENST00000494274 RIMBP3CA6NJZ7 1639 aa12.4□□□□□ -0.42
RBM39-239ENST00000494274 RIMBP3BA6NNM3 1639 aa12.4□□□□□ -0.42
RBM39-239ENST00000494274 RIMBP3Q9UFD9 1639 aa12.4□□□□□ -0.42
RBM39-239ENST00000494274 CHD1O14646 1710 aa12.4□□□□□ -0.43
RBM39-239ENST00000494274 FHAD1B1AJZ9 1412 aa12.39□□□□□ -0.43
RBM39-239ENST00000494274 ABCA5Q8WWZ7 1642 aa12.38□□□□□ -0.43
RBM39-239ENST00000494274 GRIN2AQ12879 1464 aa12.36□□□□□ -0.43
RBM39-239ENST00000494274 IGF1RP08069 1367 aa12.36□□□□□ -0.43
RBM39-239ENST00000494274 KIF27Q86VH2 1401 aa12.36□□□□□ -0.43
RBM39-239ENST00000494274 TRHP20396 242 aaPredicted RBP12.34□□□□□ -0.43
RBM39-239ENST00000494274 ARAP1Q96P48 1450 aa12.34□□□□□ -0.43
RBM39-239ENST00000494274 ERICH3Q5RHP9 1530 aa12.33□□□□□ -0.44
RBM39-239ENST00000494274 CLASP1Q7Z460 1538 aa12.33□□□□□ -0.44
RBM39-239ENST00000494274 PBRM1Q86U86 1689 aa12.32□□□□□ -0.44
RBM39-239ENST00000494274 JPH4Q96JJ6 628 aa12.32□□□□□ -0.44
RBM39-239ENST00000494274 NUP160Q12769 1436 aa12.3□□□□□ -0.44
RBM39-239ENST00000494274 ADAMTS12P58397 1594 aa12.3□□□□□ -0.44
RBM39-239ENST00000494274 CARMIL1Q5VZK9 1371 aa12.29□□□□□ -0.44
RBM39-239ENST00000494274 CHIC1Q5VXU3 224 aa12.27□□□□□ -0.45
RBM39-239ENST00000494274 CEP170Q5SW79 1584 aa12.26□□□□□ -0.45
RBM39-239ENST00000494274 PRG4Q92954 1404 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms