RNA–Protein interactions for RNA: ENST00000494255.5

TRA2A-209, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-209ENST00000494255 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.97□□□□□ -0.017e-12■■■■■ 107.6
TRA2A-209ENST00000494255 NCBP2P52298 156 aaKnown RBP eCLIP11.59□□□□□ -0.554e-45■■■■■ 49.9
TRA2A-209ENST00000494255 TRA2AQ13595 282 aaKnown RBP eCLIP12.13□□□□□ -0.472e-8■■■■■ 41.5
TRA2A-209ENST00000494255 SF3B4Q15427 424 aaKnown RBP eCLIP11.3□□□□□ -0.63e-11■■■■■ 37.6
TRA2A-209ENST00000494255 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.87□□□□□ -0.512e-6■■■■■ 34.8
TRA2A-209ENST00000494255 DDX3XO00571 662 aaKnown RBP eCLIP13□□□□□ -0.334e-21■■■■■ 31.7
TRA2A-209ENST00000494255 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.79□□□□□ -0.22e-7■■■■■ 30.1
TRA2A-209ENST00000494255 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.61□□□□□ -0.397e-9■■■■■ 29.7
TRA2A-209ENST00000494255 SF3B1O75533 1304 aaKnown RBP eCLIP13.52□□□□□ -0.242e-7■■■■■ 28.2
TRA2A-209ENST00000494255 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.7■□□□□ 0.267e-10■■■■□ 23.6
TRA2A-209ENST00000494255 EFTUD2Q15029 972 aaKnown RBP eCLIP12.12□□□□□ -0.471e-10■■■■□ 23.4
TRA2A-209ENST00000494255 PCBP2Q15366 365 aaKnown RBP eCLIP11.91□□□□□ -0.52e-6■■■■□ 23.1
TRA2A-209ENST00000494255 KHSRPQ92945 711 aaKnown RBP eCLIP13.08□□□□□ -0.317e-7■■■■□ 22.3
TRA2A-209ENST00000494255 RBM15Q96T37 977 aaKnown RBP eCLIP12.56□□□□□ -0.42e-7■■■■□ 22
TRA2A-209ENST00000494255 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.68■□□□□ 0.749e-16■■■■□ 20.9
TRA2A-209ENST00000494255 TARDBPQ13148 414 aaKnown RBP eCLIP12.16□□□□□ -0.464e-6■■■■□ 19.5
TRA2A-209ENST00000494255 AGGF1Q8N302 714 aaeCLIP12.28□□□□□ -0.442e-25■■■□□ 18.3
TRA2A-209ENST00000494255 PPIGQ13427 754 aaKnown RBP eCLIP13.96□□□□□ -0.173e-6■■■□□ 17
TRA2A-209ENST00000494255 ZRANB2O95218 330 aaKnown RBP eCLIP12.71□□□□□ -0.375e-6■■■□□ 15.5
TRA2A-209ENST00000494255 U2AF1Q01081 240 aaKnown RBP eCLIP16.67■□□□□ 0.261e-7■■■□□ 15.2
TRA2A-209ENST00000494255 ZNF622Q969S3 477 aaKnown RBP eCLIP15.84■□□□□ 0.135e-11■■■□□ 15
TRA2A-209ENST00000494255 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.89□□□□□ -0.192e-9■■■□□ 15
TRA2A-209ENST00000494255 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.39□□□□□ -0.758e-14■■■□□ 14.8
TRA2A-209ENST00000494255 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.37□□□□□ -0.595e-7■■■□□ 14.6
TRA2A-209ENST00000494255 PTBP1P26599 531 aaKnown RBP eCLIP9.9□□□□□ -0.835e-18■■□□□ 14.2
TRA2A-209ENST00000494255 CPSF6Q16630 551 aaKnown RBP eCLIP11.84□□□□□ -0.511e-6■■□□□ 13.9
TRA2A-209ENST00000494255 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.37□□□□□ -0.113e-9■■□□□ 13.6
TRA2A-209ENST00000494255 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.8■□□□□ 0.66e-8■■□□□ 13.6
TRA2A-209ENST00000494255 QKIQ96PU8 341 aaKnown RBP eCLIP12.61□□□□□ -0.393e-6■■□□□ 13.1
TRA2A-209ENST00000494255 SAFB2Q14151 953 aaKnown RBP eCLIP17.77■□□□□ 0.431e-8■■□□□ 12.9
TRA2A-209ENST00000494255 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.06■□□□□ 0.641e-7■■□□□ 12.6
TRA2A-209ENST00000494255 AQRO60306 1485 aaKnown RBP eCLIP21.34■■□□□ 1.013e-7■■□□□ 11.9
TRA2A-209ENST00000494255 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.08□□□□□ -0.487e-6■■□□□ 11.8
TRA2A-209ENST00000494255 NKRFO15226 690 aaKnown RBP eCLIP14.26□□□□□ -0.131e-12■■□□□ 11.7
TRA2A-209ENST00000494255 U2AF2P26368 475 aaKnown RBP eCLIP14.12□□□□□ -0.154e-7■■□□□ 11.5
TRA2A-209ENST00000494255 TIA1P31483 386 aaKnown RBP eCLIP11.7□□□□□ -0.546e-6■■□□□ 11.4
TRA2A-209ENST00000494255 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.89□□□□□ -0.677e-9■□□□□ 11
TRA2A-209ENST00000494255 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.36□□□□□ -0.275e-8■□□□□ 10.8
TRA2A-209ENST00000494255 GTF2F1P35269 517 aaKnown RBP eCLIP13.44□□□□□ -0.267e-10■□□□□ 10.7
TRA2A-209ENST00000494255 NONOQ15233 471 aaKnown RBP eCLIP14.22□□□□□ -0.133e-11■□□□□ 10.5
TRA2A-209ENST00000494255 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.11□□□□□ -0.313e-9■□□□□ 10.4
TRA2A-209ENST00000494255 SRSF1Q07955 248 aaKnown RBP eCLIP11.25□□□□□ -0.612e-9■□□□□ 10.2
TRA2A-209ENST00000494255 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.01□□□□□ -0.334e-10■□□□□ 10.1
TRA2A-209ENST00000494255 YBX3P16989 372 aaKnown RBP eCLIP15.79■□□□□ 0.121e-9■□□□□ 9.9
TRA2A-209ENST00000494255 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.86□□□□□ -0.359e-8■□□□□ 9.9
TRA2A-209ENST00000494255 XRCC6P12956 609 aaKnown RBP eCLIP13.93□□□□□ -0.184e-7■□□□□ 9.8
TRA2A-209ENST00000494255 HNRNPKP61978 463 aaKnown RBP eCLIP12.42□□□□□ -0.422e-9■□□□□ 9.7
TRA2A-209ENST00000494255 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.178e-8■□□□□ 9
TRA2A-209ENST00000494255 GPKOWQ92917 476 aaPredicted RBP eCLIP14.39□□□□□ -0.114e-7■□□□□ 8.6
TRA2A-209ENST00000494255 SMNDC1O75940 238 aaKnown RBP eCLIP11.14□□□□□ -0.635e-9■□□□□ 8.5
TRA2A-209ENST00000494255 DDX42Q86XP3 938 aaKnown RBP eCLIP13.09□□□□□ -0.311e-7■□□□□ 8.5
TRA2A-209ENST00000494255 ZC3H11AO75152 810 aaKnown RBP eCLIP13.62□□□□□ -0.238e-9■□□□□ 8.4
TRA2A-209ENST00000494255 EWSR1Q01844 656 aaKnown RBP eCLIP9.38□□□□□ -0.911e-8■□□□□ 8.4
TRA2A-209ENST00000494255 SF3A3Q12874 501 aaKnown RBP eCLIP11.48□□□□□ -0.571e-9■□□□□ 8.3
TRA2A-209ENST00000494255 RBFOX2O43251 390 aaKnown RBP eCLIP9.85□□□□□ -0.833e-12■□□□□ 8.2
Retrieved 55 of 55 RNA–protein pairs in 9.3 ms