RNA–Protein interactions for RNA: ENST00000493952.2

SATB1-217, Transcript of SATB homeobox 1, humanhuman

TSL 3 BASIC

Gene SATB1, Length 626 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SATB1-217ENST00000493952 NISCHQ9Y2I1 1504 aa39.57■■■■□ 3.93
SATB1-217ENST00000493952 CCDC180Q9P1Z9 1646 aa35.34■■■■□ 3.25
SATB1-217ENST00000493952 ABCC9O60706 1549 aa34.52■■■■□ 3.12
SATB1-217ENST00000493952 RB1CC1Q8TDY2 1594 aa33.21■■■□□ 2.91
SATB1-217ENST00000493952 NACADO15069 1562 aa33.14■■■□□ 2.9
SATB1-217ENST00000493952 ZCCHC6Q5VYS8 1495 aaKnown RBP32.97■■■□□ 2.87
SATB1-217ENST00000493952 DCAF8L2P0C7V8 631 aa32.96■■■□□ 2.87
SATB1-217ENST00000493952 MYO15BQ96JP2 1530 aa32.88■■■□□ 2.85
SATB1-217ENST00000493952 DCAF1Q9Y4B6 1507 aa32.74■■■□□ 2.83
SATB1-217ENST00000493952 UNC13AQ9UPW8 1703 aa32.67■■■□□ 2.82
SATB1-217ENST00000493952 BICRAQ9NZM4 1560 aa32.25■■■□□ 2.75
SATB1-217ENST00000493952 SCRIBQ14160 1630 aa32.19■■■□□ 2.74
SATB1-217ENST00000493952 PABPN1Q86U42 306 aaKnown RBP eCLIP32.16■■■□□ 2.74
SATB1-217ENST00000493952 SHROOM4Q9ULL8 1493 aa31.82■■■□□ 2.68
SATB1-217ENST00000493952 DNAJC5BQ9UF47 199 aa31.68■■■□□ 2.66
SATB1-217ENST00000493952 EIF4G1Q04637 1599 aaKnown RBP31.38■■■□□ 2.61
SATB1-217ENST00000493952 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
SATB1-217ENST00000493952 CECR2Q9BXF3 1484 aa31.01■■■□□ 2.55
SATB1-217ENST00000493952 SMARCA4P51532 1647 aa30.79■■■□□ 2.52
SATB1-217ENST00000493952 BAZ1AQ9NRL2 1556 aaPredicted RBP30.69■■■□□ 2.5
SATB1-217ENST00000493952 ATAD2BQ9ULI0 1458 aa30.55■■■□□ 2.48
SATB1-217ENST00000493952 SMARCA2P51531 1590 aa30.54■■■□□ 2.48
SATB1-217ENST00000493952 NCAPD3P42695 1498 aa30.52■■■□□ 2.48
SATB1-217ENST00000493952 MROH2BQ7Z745 1585 aa30.51■■■□□ 2.47
SATB1-217ENST00000493952 PEG3Q9GZU2 1588 aa30.47■■■□□ 2.47
SATB1-217ENST00000493952 HMGXB3Q12766 1538 aa30.44■■■□□ 2.46
SATB1-217ENST00000493952 BAZ1BQ9UIG0 1483 aaKnown RBP30.31■■■□□ 2.44
SATB1-217ENST00000493952 WIZO95785 1651 aa30.26■■■□□ 2.43
SATB1-217ENST00000493952 RSF1Q96T23 1441 aaPredicted RBP30.07■■■□□ 2.4
SATB1-217ENST00000493952 TOP2AP11388 1531 aaKnown RBP29.87■■■□□ 2.37
SATB1-217ENST00000493952 NESP48681 1621 aa29.87■■■□□ 2.37
SATB1-217ENST00000493952 LAMC3Q9Y6N6 1575 aa29.81■■■□□ 2.36
SATB1-217ENST00000493952 ERCC6Q03468 1493 aa29.73■■■□□ 2.35
SATB1-217ENST00000493952 KIF21AQ7Z4S6 1674 aa29.66■■■□□ 2.34
SATB1-217ENST00000493952 CADPSQ9ULU8 1353 aa29.6■■■□□ 2.33
SATB1-217ENST00000493952 THOC2Q8NI27 1593 aaKnown RBP29.52■■■□□ 2.32
SATB1-217ENST00000493952 PDS5BQ9NTI5 1447 aa29.5■■■□□ 2.31
SATB1-217ENST00000493952 PRDM2Q13029 1718 aa29.48■■■□□ 2.31
SATB1-217ENST00000493952 CCDC88BA6NC98 1476 aa29.48■■■□□ 2.31
SATB1-217ENST00000493952 CUX2O14529 1486 aa29.45■■■□□ 2.31
SATB1-217ENST00000493952 CFTRP13569 1480 aa29.45■■■□□ 2.31
SATB1-217ENST00000493952 FANCD2Q9BXW9 1451 aa29.31■■■□□ 2.28
SATB1-217ENST00000493952 CEP164Q9UPV0 1460 aa29.29■■■□□ 2.28
SATB1-217ENST00000493952 MRC2Q9UBG0 1479 aa29.26■■■□□ 2.27
SATB1-217ENST00000493952 WDR62O43379 1518 aa29.21■■■□□ 2.27
SATB1-217ENST00000493952 SUPT5HO00267 1087 aaKnown RBP29.21■■■□□ 2.27
SATB1-217ENST00000493952 URB2Q14146 1524 aaKnown RBP29.05■■■□□ 2.24
SATB1-217ENST00000493952 TOPBP1Q92547 1522 aa28.86■■■□□ 2.21
SATB1-217ENST00000493952 DNMBPQ6XZF7 1577 aa28.85■■■□□ 2.21
SATB1-217ENST00000493952 ABCC8Q09428 1581 aa28.8■■■□□ 2.2
SATB1-217ENST00000493952 IFT140Q96RY7 1462 aa28.66■■■□□ 2.18
SATB1-217ENST00000493952 CUX1P39880 1505 aa28.64■■■□□ 2.17
SATB1-217ENST00000493952 TARBP1Q13395 1621 aaKnown RBP28.61■■■□□ 2.17
SATB1-217ENST00000493952 POLA1P09884 1462 aaPredicted RBP28.6■■■□□ 2.17
SATB1-217ENST00000493952 ZNF608Q9ULD9 1512 aaPredicted RBP28.57■■■□□ 2.16
SATB1-217ENST00000493952 DNAJC5Q9H3Z4 198 aa28.55■■■□□ 2.16
SATB1-217ENST00000493952 EIF4G3O43432 1585 aaKnown RBP28.54■■■□□ 2.16
SATB1-217ENST00000493952 FGD5Q6ZNL6 1462 aa28.53■■■□□ 2.16
SATB1-217ENST00000493952 RAD54L2Q9Y4B4 1467 aa28.47■■■□□ 2.15
SATB1-217ENST00000493952 WDR97A6NE52 1622 aa28.45■■■□□ 2.14
SATB1-217ENST00000493952 BIVM-ERCC5R4GMW8 1640 aa28.45■■■□□ 2.14
SATB1-217ENST00000493952 SOGA1O94964 1423 aa28.43■■■□□ 2.14
SATB1-217ENST00000493952 SYNJ1O43426 1573 aa28.41■■■□□ 2.14
SATB1-217ENST00000493952 TOP2BQ02880 1626 aa28.4■■■□□ 2.14
SATB1-217ENST00000493952 WRNQ14191 1432 aaPredicted RBP eCLIP28.36■■■□□ 2.13
SATB1-217ENST00000493952 AQRO60306 1485 aaKnown RBP eCLIP28.36■■■□□ 2.13
SATB1-217ENST00000493952 TDRD9Q8NDG6 1382 aaKnown RBP28.27■■■□□ 2.12
SATB1-217ENST00000493952 CHD1O14646 1710 aa28.26■■■□□ 2.12
SATB1-217ENST00000493952 PBRM1Q86U86 1689 aa28.26■■■□□ 2.12
SATB1-217ENST00000493952 ABCA10Q8WWZ4 1543 aa28.23■■■□□ 2.11
SATB1-217ENST00000493952 ABCA5Q8WWZ7 1642 aa28.22■■■□□ 2.11
SATB1-217ENST00000493952 GRIN2BQ13224 1484 aa28.13■■■□□ 2.09
SATB1-217ENST00000493952 GAPVD1Q14C86 1478 aa28.13■■■□□ 2.09
SATB1-217ENST00000493952 SNAPC4Q5SXM2 1469 aa28.13■■■□□ 2.09
SATB1-217ENST00000493952 OSCARQ8IYS5 282 aa28.12■■■□□ 2.09
SATB1-217ENST00000493952 MAGI1Q96QZ7 1491 aaPredicted RBP28.08■■■□□ 2.09
SATB1-217ENST00000493952 SYNJ2O15056 1496 aa27.97■■■□□ 2.07
SATB1-217ENST00000493952 FBLN2P98095 1184 aa27.97■■■□□ 2.07
SATB1-217ENST00000493952 ADAMTS12P58397 1594 aa27.94■■■□□ 2.06
SATB1-217ENST00000493952 ERICH3Q5RHP9 1530 aa27.92■■■□□ 2.06
SATB1-217ENST00000493952 CHMP7Q8WUX9 453 aaPredicted RBP27.87■■■□□ 2.05
SATB1-217ENST00000493952 RIMBP3CA6NJZ7 1639 aa27.87■■■□□ 2.05
SATB1-217ENST00000493952 RIMBP3BA6NNM3 1639 aa27.87■■■□□ 2.05
SATB1-217ENST00000493952 RIMBP3Q9UFD9 1639 aa27.87■■■□□ 2.05
SATB1-217ENST00000493952 CLASP1Q7Z460 1538 aa27.85■■■□□ 2.05
SATB1-217ENST00000493952 GRIN2AQ12879 1464 aa27.8■■■□□ 2.04
SATB1-217ENST00000493952 ARHGEF11O15085 1522 aa27.8■■■□□ 2.04
SATB1-217ENST00000493952 FHAD1B1AJZ9 1412 aa27.77■■■□□ 2.04
SATB1-217ENST00000493952 KIF27Q86VH2 1401 aa27.75■■■□□ 2.03
SATB1-217ENST00000493952 CEP170Q5SW79 1584 aa27.73■■■□□ 2.03
SATB1-217ENST00000493952 CUL7Q14999 1698 aa27.72■■■□□ 2.03
SATB1-217ENST00000493952 NUP160Q12769 1436 aa27.66■■■□□ 2.02
SATB1-217ENST00000493952 IGF1RP08069 1367 aa27.63■■■□□ 2.01
SATB1-217ENST00000493952 TRIM41Q8WV44 630 aa27.6■■■□□ 2.01
SATB1-217ENST00000493952 ARAP1Q96P48 1450 aa27.57■■■□□ 2
SATB1-217ENST00000493952 SHROOM2Q13796 1616 aa27.56■■■□□ 2
SATB1-217ENST00000493952 RUSC2Q8N2Y8 1516 aa27.56■■■□□ 2
SATB1-217ENST00000493952 ERCC6L2Q5T890 1561 aa27.48■■□□□ 1.99
SATB1-217ENST00000493952 CARMIL1Q5VZK9 1371 aa27.47■■□□□ 1.99
SATB1-217ENST00000493952 CYB5RLQ6IPT4 315 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms