RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 NISCHQ9Y2I1 1504 aa27.92■■■□□ 2.06
CTSA-209ENST00000493522 ABCC9O60706 1549 aa25.27■■□□□ 1.64
CTSA-209ENST00000493522 CCDC180Q9P1Z9 1646 aa25.12■■□□□ 1.61
CTSA-209ENST00000493522 RB1CC1Q8TDY2 1594 aa24.01■■□□□ 1.43
CTSA-209ENST00000493522 NACADO15069 1562 aa23.81■■□□□ 1.4
CTSA-209ENST00000493522 DNAJC5BQ9UF47 199 aa23.79■■□□□ 1.4
CTSA-209ENST00000493522 DCAF8L2P0C7V8 631 aa23.63■■□□□ 1.37
CTSA-209ENST00000493522 PABPN1Q86U42 306 aaKnown RBP eCLIP23.49■■□□□ 1.353e-6■■■□□ 14.6
CTSA-209ENST00000493522 MYO15BQ96JP2 1530 aa23.44■■□□□ 1.34
CTSA-209ENST00000493522 UNC13AQ9UPW8 1703 aa23.39■■□□□ 1.33
CTSA-209ENST00000493522 ZCCHC6Q5VYS8 1495 aaKnown RBP23.3■■□□□ 1.32
CTSA-209ENST00000493522 BICRAQ9NZM4 1560 aa23.27■■□□□ 1.32
CTSA-209ENST00000493522 DCAF1Q9Y4B6 1507 aa23.08■■□□□ 1.28
CTSA-209ENST00000493522 SHROOM4Q9ULL8 1493 aa23.03■■□□□ 1.28
CTSA-209ENST00000493522 SCRIBQ14160 1630 aa22.87■■□□□ 1.25
CTSA-209ENST00000493522 CC2D2AQ9P2K1 1620 aa22.82■■□□□ 1.24
CTSA-209ENST00000493522 CECR2Q9BXF3 1484 aa22.8■■□□□ 1.24
CTSA-209ENST00000493522 EIF4G1Q04637 1599 aaKnown RBP22.75■■□□□ 1.23
CTSA-209ENST00000493522 DNAJC5Q9H3Z4 198 aa22.01■■□□□ 1.11
CTSA-209ENST00000493522 NCAPD3P42695 1498 aa21.97■■□□□ 1.11
CTSA-209ENST00000493522 CUX2O14529 1486 aa21.89■■□□□ 1.09
CTSA-209ENST00000493522 ERCC6Q03468 1493 aa21.88■■□□□ 1.09
CTSA-209ENST00000493522 ATAD2BQ9ULI0 1458 aa21.88■■□□□ 1.09
CTSA-209ENST00000493522 SMARCA2P51531 1590 aa21.83■■□□□ 1.09
CTSA-209ENST00000493522 HMGXB3Q12766 1538 aa21.81■■□□□ 1.08
CTSA-209ENST00000493522 SMARCA4P51532 1647 aa21.8■■□□□ 1.08
CTSA-209ENST00000493522 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
CTSA-209ENST00000493522 BAZ1BQ9UIG0 1483 aaKnown RBP21.68■■□□□ 1.06
CTSA-209ENST00000493522 NESP48681 1621 aa21.64■■□□□ 1.05
CTSA-209ENST00000493522 AEBP2Q6ZN18 517 aaPredicted RBP21.62■■□□□ 1.05
CTSA-209ENST00000493522 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
CTSA-209ENST00000493522 LAMC3Q9Y6N6 1575 aa21.52■■□□□ 1.04
CTSA-209ENST00000493522 MROH2BQ7Z745 1585 aa21.51■■□□□ 1.03
CTSA-209ENST00000493522 THOC2Q8NI27 1593 aaKnown RBP21.48■■□□□ 1.03
CTSA-209ENST00000493522 PDS5BQ9NTI5 1447 aa21.42■■□□□ 1.02
CTSA-209ENST00000493522 WIZO95785 1651 aa21.37■■□□□ 1.01
CTSA-209ENST00000493522 KIF21AQ7Z4S6 1674 aa21.35■■□□□ 1.01
CTSA-209ENST00000493522 CADPSQ9ULU8 1353 aa21.3■■□□□ 1
CTSA-209ENST00000493522 RSF1Q96T23 1441 aaPredicted RBP21.26■□□□□ 0.99
CTSA-209ENST00000493522 MRC2Q9UBG0 1479 aa21.22■□□□□ 0.99
CTSA-209ENST00000493522 WDR62O43379 1518 aa21.17■□□□□ 0.98
CTSA-209ENST00000493522 TOP2AP11388 1531 aaKnown RBP21.12■□□□□ 0.97
CTSA-209ENST00000493522 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
CTSA-209ENST00000493522 FANCD2Q9BXW9 1451 aa21.07■□□□□ 0.96
CTSA-209ENST00000493522 CFTRP13569 1480 aa21.02■□□□□ 0.96
CTSA-209ENST00000493522 TRIM41Q8WV44 630 aa20.99■□□□□ 0.95
CTSA-209ENST00000493522 URB2Q14146 1524 aaKnown RBP20.87■□□□□ 0.93
CTSA-209ENST00000493522 SUPT5HO00267 1087 aaKnown RBP20.84■□□□□ 0.93
CTSA-209ENST00000493522 OSCARQ8IYS5 282 aa20.84■□□□□ 0.93
CTSA-209ENST00000493522 PRDM2Q13029 1718 aa20.81■□□□□ 0.92
CTSA-209ENST00000493522 CCDC88BA6NC98 1476 aa20.79■□□□□ 0.92
CTSA-209ENST00000493522 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
CTSA-209ENST00000493522 CHIC1Q5VXU3 224 aa20.69■□□□□ 0.9
CTSA-209ENST00000493522 TOPBP1Q92547 1522 aa20.63■□□□□ 0.89
CTSA-209ENST00000493522 ZNF608Q9ULD9 1512 aaPredicted RBP20.63■□□□□ 0.89
CTSA-209ENST00000493522 ABCC8Q09428 1581 aa20.61■□□□□ 0.89
CTSA-209ENST00000493522 RIMBP3CA6NJZ7 1639 aa20.56■□□□□ 0.88
CTSA-209ENST00000493522 RIMBP3BA6NNM3 1639 aa20.56■□□□□ 0.88
CTSA-209ENST00000493522 RIMBP3Q9UFD9 1639 aa20.56■□□□□ 0.88
CTSA-209ENST00000493522 DNMBPQ6XZF7 1577 aa20.55■□□□□ 0.88
CTSA-209ENST00000493522 EIF4G3O43432 1585 aaKnown RBP20.54■□□□□ 0.88
CTSA-209ENST00000493522 ARHGEF11O15085 1522 aa20.51■□□□□ 0.87
CTSA-209ENST00000493522 TARBP1Q13395 1621 aaKnown RBP20.45■□□□□ 0.86
CTSA-209ENST00000493522 AQRO60306 1485 aaKnown RBP eCLIP20.43■□□□□ 0.868e-8■■■■■ 28
CTSA-209ENST00000493522 POLA1P09884 1462 aaPredicted RBP20.42■□□□□ 0.86
CTSA-209ENST00000493522 CHD1O14646 1710 aa20.38■□□□□ 0.85
CTSA-209ENST00000493522 FBLN2P98095 1184 aa20.36■□□□□ 0.85
CTSA-209ENST00000493522 CYB5RLQ6IPT4 315 aa20.35■□□□□ 0.85
CTSA-209ENST00000493522 RAD54L2Q9Y4B4 1467 aa20.32■□□□□ 0.84
CTSA-209ENST00000493522 SOGA1O94964 1423 aa20.32■□□□□ 0.84
CTSA-209ENST00000493522 TDRD9Q8NDG6 1382 aaKnown RBP20.29■□□□□ 0.84
CTSA-209ENST00000493522 WDR97A6NE52 1622 aa20.28■□□□□ 0.84
CTSA-209ENST00000493522 ARAP1Q96P48 1450 aa20.28■□□□□ 0.84
CTSA-209ENST00000493522 FGD5Q6ZNL6 1462 aa20.26■□□□□ 0.83
CTSA-209ENST00000493522 SNAPC4Q5SXM2 1469 aa20.24■□□□□ 0.83
CTSA-209ENST00000493522 CUX1P39880 1505 aa20.21■□□□□ 0.83
CTSA-209ENST00000493522 MAGI1Q96QZ7 1491 aaPredicted RBP20.2■□□□□ 0.82
CTSA-209ENST00000493522 TRHP20396 242 aaPredicted RBP20.2■□□□□ 0.82
CTSA-209ENST00000493522 CHMP7Q8WUX9 453 aaPredicted RBP20.19■□□□□ 0.82
CTSA-209ENST00000493522 GRIN2BQ13224 1484 aa20.18■□□□□ 0.82
CTSA-209ENST00000493522 CLASP1Q7Z460 1538 aa20.17■□□□□ 0.82
CTSA-209ENST00000493522 SYNJ1O43426 1573 aa20.17■□□□□ 0.82
CTSA-209ENST00000493522 BIVM-ERCC5R4GMW8 1640 aa20.13■□□□□ 0.81
CTSA-209ENST00000493522 SYNJ2O15056 1496 aa20.13■□□□□ 0.81
CTSA-209ENST00000493522 TOP2BQ02880 1626 aa20.09■□□□□ 0.81
CTSA-209ENST00000493522 GAPVD1Q14C86 1478 aa20.08■□□□□ 0.81
CTSA-209ENST00000493522 WRNQ14191 1432 aaPredicted RBP eCLIP20.08■□□□□ 0.8
CTSA-209ENST00000493522 PBRM1Q86U86 1689 aa20.05■□□□□ 0.8
CTSA-209ENST00000493522 ABCA10Q8WWZ4 1543 aa20.03■□□□□ 0.8
CTSA-209ENST00000493522 ABCA5Q8WWZ7 1642 aa20.01■□□□□ 0.79
CTSA-209ENST00000493522 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
CTSA-209ENST00000493522 ADAMTS12P58397 1594 aa19.88■□□□□ 0.77
CTSA-209ENST00000493522 NUP160Q12769 1436 aa19.85■□□□□ 0.77
CTSA-209ENST00000493522 FHAD1B1AJZ9 1412 aa19.83■□□□□ 0.76
CTSA-209ENST00000493522 CEP170Q5SW79 1584 aa19.83■□□□□ 0.76
CTSA-209ENST00000493522 ERCC6L2Q5T890 1561 aa19.81■□□□□ 0.76
CTSA-209ENST00000493522 ERICH3Q5RHP9 1530 aa19.79■□□□□ 0.76
CTSA-209ENST00000493522 SHROOM2Q13796 1616 aa19.76■□□□□ 0.75
CTSA-209ENST00000493522 PRG4Q92954 1404 aaPredicted RBP19.67■□□□□ 0.74
CTSA-209ENST00000493522 JPH4Q96JJ6 628 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms