RNA–Protein interactions for RNA: ENST00000493356.5

PFDN4-205, Transcript of prefoldin subunit 4, humanhuman

TSL 3

Gene PFDN4, Length 659 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN4-205ENST00000493356 NISCHQ9Y2I1 1504 aa54.43■■■■■ 6.3
PFDN4-205ENST00000493356 ABCC9O60706 1549 aa49.28■■■■■ 5.48
PFDN4-205ENST00000493356 CCDC180Q9P1Z9 1646 aa49■■■■■ 5.43
PFDN4-205ENST00000493356 RB1CC1Q8TDY2 1594 aa46.77■■■■■ 5.08
PFDN4-205ENST00000493356 DNAJC5BQ9UF47 199 aa46.51■■■■■ 5.04
PFDN4-205ENST00000493356 NACADO15069 1562 aa46.39■■■■■ 5.02
PFDN4-205ENST00000493356 DCAF8L2P0C7V8 631 aa46.01■■■■■ 4.96
PFDN4-205ENST00000493356 PABPN1Q86U42 306 aaKnown RBP eCLIP45.81■■■■■ 4.92
PFDN4-205ENST00000493356 UNC13AQ9UPW8 1703 aa45.76■■■■■ 4.92
PFDN4-205ENST00000493356 MYO15BQ96JP2 1530 aa45.64■■■■■ 4.9
PFDN4-205ENST00000493356 BICRAQ9NZM4 1560 aa45.45■■■■■ 4.87
PFDN4-205ENST00000493356 ZCCHC6Q5VYS8 1495 aaKnown RBP45.04■■■■■ 4.8
PFDN4-205ENST00000493356 DCAF1Q9Y4B6 1507 aa44.95■■■■■ 4.79
PFDN4-205ENST00000493356 SHROOM4Q9ULL8 1493 aa44.79■■■■■ 4.76
PFDN4-205ENST00000493356 SCRIBQ14160 1630 aa44.61■■■■■ 4.73
PFDN4-205ENST00000493356 CC2D2AQ9P2K1 1620 aa44.51■■■■■ 4.72
PFDN4-205ENST00000493356 CECR2Q9BXF3 1484 aa44.42■■■■■ 4.7
PFDN4-205ENST00000493356 EIF4G1Q04637 1599 aaKnown RBP44.35■■■■■ 4.69
PFDN4-205ENST00000493356 DNAJC5Q9H3Z4 198 aa42.94■■■■■ 4.46
PFDN4-205ENST00000493356 NCAPD3P42695 1498 aa42.82■■■■■ 4.45
PFDN4-205ENST00000493356 ATAD2BQ9ULI0 1458 aa42.64■■■■■ 4.42
PFDN4-205ENST00000493356 CUX2O14529 1486 aa42.61■■■■■ 4.41
PFDN4-205ENST00000493356 ERCC6Q03468 1493 aa42.55■■■■■ 4.4
PFDN4-205ENST00000493356 SMARCA4P51532 1647 aa42.53■■■■■ 4.4
PFDN4-205ENST00000493356 SMARCA2P51531 1590 aa42.51■■■■■ 4.4
PFDN4-205ENST00000493356 HMGXB3Q12766 1538 aa42.48■■■■■ 4.39
PFDN4-205ENST00000493356 BAZ1AQ9NRL2 1556 aaPredicted RBP42.27■■■■■ 4.36
PFDN4-205ENST00000493356 NESP48681 1621 aa42.26■■■■■ 4.36
PFDN4-205ENST00000493356 BAZ1BQ9UIG0 1483 aaKnown RBP42.21■■■■■ 4.35
PFDN4-205ENST00000493356 PEG3Q9GZU2 1588 aa42.13■■■■■ 4.33
PFDN4-205ENST00000493356 MROH2BQ7Z745 1585 aa41.93■■■■■ 4.3
PFDN4-205ENST00000493356 LAMC3Q9Y6N6 1575 aa41.92■■■■■ 4.3
PFDN4-205ENST00000493356 THOC2Q8NI27 1593 aaKnown RBP41.91■■■■■ 4.3
PFDN4-205ENST00000493356 KIF21AQ7Z4S6 1674 aa41.72■■■■■ 4.27
PFDN4-205ENST00000493356 PDS5BQ9NTI5 1447 aa41.66■■■■■ 4.26
PFDN4-205ENST00000493356 CADPSQ9ULU8 1353 aa41.49■■■■■ 4.23
PFDN4-205ENST00000493356 WIZO95785 1651 aa41.42■■■■■ 4.22
PFDN4-205ENST00000493356 MRC2Q9UBG0 1479 aa41.33■■■■■ 4.21
PFDN4-205ENST00000493356 WDR62O43379 1518 aa41.26■■■■■ 4.2
PFDN4-205ENST00000493356 CEP164Q9UPV0 1460 aa41.1■■■■■ 4.17
PFDN4-205ENST00000493356 FANCD2Q9BXW9 1451 aa41.02■■■■■ 4.16
PFDN4-205ENST00000493356 CFTRP13569 1480 aa40.96■■■■■ 4.15
PFDN4-205ENST00000493356 RSF1Q96T23 1441 aaPredicted RBP40.93■■■■■ 4.14
PFDN4-205ENST00000493356 TRIM41Q8WV44 630 aa40.9■■■■■ 4.14
PFDN4-205ENST00000493356 TOP2AP11388 1531 aaKnown RBP40.88■■■■■ 4.13
PFDN4-205ENST00000493356 URB2Q14146 1524 aaKnown RBP40.72■■■■■ 4.11
PFDN4-205ENST00000493356 OSCARQ8IYS5 282 aa40.58■■■■■ 4.09
PFDN4-205ENST00000493356 PRDM2Q13029 1718 aa40.56■■■■■ 4.08
PFDN4-205ENST00000493356 CCDC88BA6NC98 1476 aa40.4■■■■■ 4.06
PFDN4-205ENST00000493356 IFT140Q96RY7 1462 aa40.29■■■■■ 4.04
PFDN4-205ENST00000493356 ZNF608Q9ULD9 1512 aaPredicted RBP40.27■■■■■ 4.04
PFDN4-205ENST00000493356 TOPBP1Q92547 1522 aa40.22■■■■■ 4.03
PFDN4-205ENST00000493356 RIMBP3CA6NJZ7 1639 aa40.13■■■■■ 4.02
PFDN4-205ENST00000493356 RIMBP3BA6NNM3 1639 aa40.13■■■■■ 4.02
PFDN4-205ENST00000493356 RIMBP3Q9UFD9 1639 aa40.13■■■■■ 4.02
PFDN4-205ENST00000493356 ABCC8Q09428 1581 aa40.1■■■■■ 4.01
PFDN4-205ENST00000493356 DNMBPQ6XZF7 1577 aa40.06■■■■■ 4
PFDN4-205ENST00000493356 EIF4G3O43432 1585 aaKnown RBP40.05■■■■■ 4
PFDN4-205ENST00000493356 ARHGEF11O15085 1522 aa39.97■■■■□ 3.99
PFDN4-205ENST00000493356 TARBP1Q13395 1621 aaKnown RBP39.91■■■■□ 3.98
PFDN4-205ENST00000493356 AQRO60306 1485 aaKnown RBP eCLIP39.85■■■■□ 3.97
PFDN4-205ENST00000493356 CHD1O14646 1710 aa39.82■■■■□ 3.96
PFDN4-205ENST00000493356 POLA1P09884 1462 aaPredicted RBP39.8■■■■□ 3.96
PFDN4-205ENST00000493356 CYB5RLQ6IPT4 315 aa39.66■■■■□ 3.94
PFDN4-205ENST00000493356 RAD54L2Q9Y4B4 1467 aa39.65■■■■□ 3.94
PFDN4-205ENST00000493356 FBLN2P98095 1184 aa39.62■■■■□ 3.93
PFDN4-205ENST00000493356 SOGA1O94964 1423 aa39.58■■■■□ 3.93
PFDN4-205ENST00000493356 TDRD9Q8NDG6 1382 aaKnown RBP39.56■■■■□ 3.92
PFDN4-205ENST00000493356 ARAP1Q96P48 1450 aa39.56■■■■□ 3.92
PFDN4-205ENST00000493356 FGD5Q6ZNL6 1462 aa39.49■■■■□ 3.91
PFDN4-205ENST00000493356 WDR97A6NE52 1622 aa39.47■■■■□ 3.91
PFDN4-205ENST00000493356 SNAPC4Q5SXM2 1469 aa39.44■■■■□ 3.9
PFDN4-205ENST00000493356 CUX1P39880 1505 aa39.42■■■■□ 3.9
PFDN4-205ENST00000493356 CLASP1Q7Z460 1538 aa39.35■■■■□ 3.89
PFDN4-205ENST00000493356 MAGI1Q96QZ7 1491 aaPredicted RBP39.33■■■■□ 3.89
PFDN4-205ENST00000493356 TRHP20396 242 aaPredicted RBP39.3■■■■□ 3.88
PFDN4-205ENST00000493356 GRIN2BQ13224 1484 aa39.29■■■■□ 3.88
PFDN4-205ENST00000493356 CHMP7Q8WUX9 453 aaPredicted RBP39.28■■■■□ 3.88
PFDN4-205ENST00000493356 SYNJ1O43426 1573 aa39.28■■■■□ 3.88
PFDN4-205ENST00000493356 SYNJ2O15056 1496 aa39.2■■■■□ 3.87
PFDN4-205ENST00000493356 PBRM1Q86U86 1689 aa39.14■■■■□ 3.86
PFDN4-205ENST00000493356 GAPVD1Q14C86 1478 aa39.11■■■■□ 3.85
PFDN4-205ENST00000493356 ABCA10Q8WWZ4 1543 aa39.03■■■■□ 3.84
PFDN4-205ENST00000493356 ABCA5Q8WWZ7 1642 aa39.03■■■■□ 3.84
PFDN4-205ENST00000493356 SUPT5HO00267 1087 aaKnown RBP38.85■■■■□ 3.81
PFDN4-205ENST00000493356 WRNQ14191 1432 aaPredicted RBP eCLIP38.8■■■■□ 3.8
PFDN4-205ENST00000493356 GRIN2AQ12879 1464 aa38.79■■■■□ 3.8
PFDN4-205ENST00000493356 ADAMTS12P58397 1594 aa38.74■■■■□ 3.79
PFDN4-205ENST00000493356 BIVM-ERCC5R4GMW8 1640 aa38.72■■■■□ 3.79
PFDN4-205ENST00000493356 ERCC6L2Q5T890 1561 aa38.71■■■■□ 3.79
PFDN4-205ENST00000493356 TOP2BQ02880 1626 aa38.71■■■■□ 3.79
PFDN4-205ENST00000493356 NUP160Q12769 1436 aa38.68■■■■□ 3.78
PFDN4-205ENST00000493356 CEP170Q5SW79 1584 aa38.68■■■■□ 3.78
PFDN4-205ENST00000493356 FHAD1B1AJZ9 1412 aa38.6■■■■□ 3.77
PFDN4-205ENST00000493356 SHROOM2Q13796 1616 aa38.56■■■■□ 3.76
PFDN4-205ENST00000493356 ERICH3Q5RHP9 1530 aa38.53■■■■□ 3.76
PFDN4-205ENST00000493356 AEBP2Q6ZN18 517 aaPredicted RBP38.38■■■■□ 3.73
PFDN4-205ENST00000493356 PRG4Q92954 1404 aaPredicted RBP38.31■■■■□ 3.72
PFDN4-205ENST00000493356 JPH4Q96JJ6 628 aa38.25■■■■□ 3.71
PFDN4-205ENST00000493356 KIF13AQ9H1H9 1805 aa38.23■■■■□ 3.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms