RNA–Protein interactions for RNA: ENST00000493271.1

SNRNP200-207, Transcript of small nuclear ribonucleoprotein U5 subunit 200, humanhuman

TSL 3

Gene SNRNP200, Length 585 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP200-207ENST00000493271 NISCHQ9Y2I1 1504 aa27.86■■■□□ 2.05
SNRNP200-207ENST00000493271 ABCC9O60706 1549 aa25.22■■□□□ 1.63
SNRNP200-207ENST00000493271 CCDC180Q9P1Z9 1646 aa25.14■■□□□ 1.61
SNRNP200-207ENST00000493271 RB1CC1Q8TDY2 1594 aa24.03■■□□□ 1.44
SNRNP200-207ENST00000493271 NACADO15069 1562 aa23.82■■□□□ 1.4
SNRNP200-207ENST00000493271 DNAJC5BQ9UF47 199 aa23.77■■□□□ 1.4
SNRNP200-207ENST00000493271 DCAF8L2P0C7V8 631 aa23.5■■□□□ 1.35
SNRNP200-207ENST00000493271 MYO15BQ96JP2 1530 aa23.49■■□□□ 1.35
SNRNP200-207ENST00000493271 PABPN1Q86U42 306 aaKnown RBP eCLIP23.4■■□□□ 1.342e-8■■■■□ 24.1
SNRNP200-207ENST00000493271 UNC13AQ9UPW8 1703 aa23.36■■□□□ 1.33
SNRNP200-207ENST00000493271 BICRAQ9NZM4 1560 aa23.24■■□□□ 1.31
SNRNP200-207ENST00000493271 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
SNRNP200-207ENST00000493271 DCAF1Q9Y4B6 1507 aa23.08■■□□□ 1.29
SNRNP200-207ENST00000493271 ZCCHC6Q5VYS8 1495 aaKnown RBP23.05■■□□□ 1.28
SNRNP200-207ENST00000493271 CC2D2AQ9P2K1 1620 aa22.8■■□□□ 1.24
SNRNP200-207ENST00000493271 CECR2Q9BXF3 1484 aa22.79■■□□□ 1.24
SNRNP200-207ENST00000493271 SCRIBQ14160 1630 aa22.78■■□□□ 1.24
SNRNP200-207ENST00000493271 EIF4G1Q04637 1599 aaKnown RBP22.73■■□□□ 1.23
SNRNP200-207ENST00000493271 DNAJC5Q9H3Z4 198 aa22.09■■□□□ 1.13
SNRNP200-207ENST00000493271 NCAPD3P42695 1498 aa21.98■■□□□ 1.11
SNRNP200-207ENST00000493271 CUX2O14529 1486 aa21.94■■□□□ 1.1
SNRNP200-207ENST00000493271 ERCC6Q03468 1493 aa21.84■■□□□ 1.09
SNRNP200-207ENST00000493271 ATAD2BQ9ULI0 1458 aa21.84■■□□□ 1.09
SNRNP200-207ENST00000493271 SMARCA2P51531 1590 aa21.82■■□□□ 1.08
SNRNP200-207ENST00000493271 HMGXB3Q12766 1538 aa21.81■■□□□ 1.08
SNRNP200-207ENST00000493271 SMARCA4P51532 1647 aa21.77■■□□□ 1.07
SNRNP200-207ENST00000493271 BAZ1AQ9NRL2 1556 aaPredicted RBP21.68■■□□□ 1.06
SNRNP200-207ENST00000493271 BAZ1BQ9UIG0 1483 aaKnown RBP21.64■■□□□ 1.05
SNRNP200-207ENST00000493271 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
SNRNP200-207ENST00000493271 NESP48681 1621 aa21.57■■□□□ 1.04
SNRNP200-207ENST00000493271 LAMC3Q9Y6N6 1575 aa21.53■■□□□ 1.04
SNRNP200-207ENST00000493271 THOC2Q8NI27 1593 aaKnown RBP21.47■■□□□ 1.03
SNRNP200-207ENST00000493271 PDS5BQ9NTI5 1447 aa21.42■■□□□ 1.02
SNRNP200-207ENST00000493271 MROH2BQ7Z745 1585 aa21.4■■□□□ 1.02
SNRNP200-207ENST00000493271 KIF21AQ7Z4S6 1674 aa21.31■■□□□ 1
SNRNP200-207ENST00000493271 CADPSQ9ULU8 1353 aa21.29■■□□□ 1
SNRNP200-207ENST00000493271 MRC2Q9UBG0 1479 aa21.2■□□□□ 0.98
SNRNP200-207ENST00000493271 WDR62O43379 1518 aa21.17■□□□□ 0.98
SNRNP200-207ENST00000493271 WIZO95785 1651 aa21.12■□□□□ 0.97
SNRNP200-207ENST00000493271 CEP164Q9UPV0 1460 aa21.08■□□□□ 0.97
SNRNP200-207ENST00000493271 FANCD2Q9BXW9 1451 aa21.02■□□□□ 0.96
SNRNP200-207ENST00000493271 CFTRP13569 1480 aa21.01■□□□□ 0.95
SNRNP200-207ENST00000493271 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
SNRNP200-207ENST00000493271 RSF1Q96T23 1441 aaPredicted RBP20.92■□□□□ 0.94
SNRNP200-207ENST00000493271 TOP2AP11388 1531 aaKnown RBP20.92■□□□□ 0.94
SNRNP200-207ENST00000493271 OSCARQ8IYS5 282 aa20.86■□□□□ 0.93
SNRNP200-207ENST00000493271 URB2Q14146 1524 aaKnown RBP20.83■□□□□ 0.92
SNRNP200-207ENST00000493271 PRDM2Q13029 1718 aa20.76■□□□□ 0.91
SNRNP200-207ENST00000493271 IFT140Q96RY7 1462 aa20.69■□□□□ 0.9
SNRNP200-207ENST00000493271 ABCC8Q09428 1581 aa20.64■□□□□ 0.9
SNRNP200-207ENST00000493271 CCDC88BA6NC98 1476 aa20.64■□□□□ 0.89
SNRNP200-207ENST00000493271 TOPBP1Q92547 1522 aa20.59■□□□□ 0.89
SNRNP200-207ENST00000493271 ZNF608Q9ULD9 1512 aaPredicted RBP20.58■□□□□ 0.88
SNRNP200-207ENST00000493271 RIMBP3CA6NJZ7 1639 aa20.56■□□□□ 0.88
SNRNP200-207ENST00000493271 RIMBP3BA6NNM3 1639 aa20.56■□□□□ 0.88
SNRNP200-207ENST00000493271 RIMBP3Q9UFD9 1639 aa20.56■□□□□ 0.88
SNRNP200-207ENST00000493271 DNMBPQ6XZF7 1577 aa20.52■□□□□ 0.88
SNRNP200-207ENST00000493271 EIF4G3O43432 1585 aaKnown RBP20.51■□□□□ 0.87
SNRNP200-207ENST00000493271 ARHGEF11O15085 1522 aa20.5■□□□□ 0.87
SNRNP200-207ENST00000493271 TARBP1Q13395 1621 aaKnown RBP20.42■□□□□ 0.86
SNRNP200-207ENST00000493271 AQRO60306 1485 aaKnown RBP eCLIP20.37■□□□□ 0.855e-8■■■■□ 24.1
SNRNP200-207ENST00000493271 POLA1P09884 1462 aaPredicted RBP20.37■□□□□ 0.85
SNRNP200-207ENST00000493271 CHD1O14646 1710 aa20.35■□□□□ 0.85
SNRNP200-207ENST00000493271 WDR97A6NE52 1622 aa20.33■□□□□ 0.84
SNRNP200-207ENST00000493271 CYB5RLQ6IPT4 315 aa20.32■□□□□ 0.84
SNRNP200-207ENST00000493271 SOGA1O94964 1423 aa20.28■□□□□ 0.84
SNRNP200-207ENST00000493271 FBLN2P98095 1184 aa20.28■□□□□ 0.84
SNRNP200-207ENST00000493271 ARAP1Q96P48 1450 aa20.26■□□□□ 0.83
SNRNP200-207ENST00000493271 RAD54L2Q9Y4B4 1467 aa20.24■□□□□ 0.83
SNRNP200-207ENST00000493271 TDRD9Q8NDG6 1382 aaKnown RBP20.21■□□□□ 0.83
SNRNP200-207ENST00000493271 FGD5Q6ZNL6 1462 aa20.2■□□□□ 0.82
SNRNP200-207ENST00000493271 MAGI1Q96QZ7 1491 aaPredicted RBP20.2■□□□□ 0.82
SNRNP200-207ENST00000493271 SNAPC4Q5SXM2 1469 aa20.19■□□□□ 0.82
SNRNP200-207ENST00000493271 SYNJ1O43426 1573 aa20.17■□□□□ 0.82
SNRNP200-207ENST00000493271 TRHP20396 242 aaPredicted RBP20.17■□□□□ 0.82
SNRNP200-207ENST00000493271 CLASP1Q7Z460 1538 aa20.17■□□□□ 0.82
SNRNP200-207ENST00000493271 GRIN2BQ13224 1484 aa20.16■□□□□ 0.82
SNRNP200-207ENST00000493271 CHMP7Q8WUX9 453 aaPredicted RBP20.15■□□□□ 0.82
SNRNP200-207ENST00000493271 CUX1P39880 1505 aa20.13■□□□□ 0.81
SNRNP200-207ENST00000493271 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
SNRNP200-207ENST00000493271 GAPVD1Q14C86 1478 aa20.04■□□□□ 0.8
SNRNP200-207ENST00000493271 PBRM1Q86U86 1689 aa20.01■□□□□ 0.79
SNRNP200-207ENST00000493271 ABCA10Q8WWZ4 1543 aa20.01■□□□□ 0.79
SNRNP200-207ENST00000493271 ABCA5Q8WWZ7 1642 aa19.97■□□□□ 0.79
SNRNP200-207ENST00000493271 WRNQ14191 1432 aaPredicted RBP eCLIP19.9■□□□□ 0.78
SNRNP200-207ENST00000493271 GRIN2AQ12879 1464 aa19.89■□□□□ 0.77
SNRNP200-207ENST00000493271 NUP160Q12769 1436 aa19.84■□□□□ 0.77
SNRNP200-207ENST00000493271 ADAMTS12P58397 1594 aa19.83■□□□□ 0.77
SNRNP200-207ENST00000493271 TOP2BQ02880 1626 aa19.8■□□□□ 0.76
SNRNP200-207ENST00000493271 BIVM-ERCC5R4GMW8 1640 aa19.8■□□□□ 0.76
SNRNP200-207ENST00000493271 FHAD1B1AJZ9 1412 aa19.8■□□□□ 0.76
SNRNP200-207ENST00000493271 CEP170Q5SW79 1584 aa19.78■□□□□ 0.76
SNRNP200-207ENST00000493271 ERICH3Q5RHP9 1530 aa19.77■□□□□ 0.76
SNRNP200-207ENST00000493271 AEBP2Q6ZN18 517 aaPredicted RBP19.77■□□□□ 0.76
SNRNP200-207ENST00000493271 SHROOM2Q13796 1616 aa19.76■□□□□ 0.75
SNRNP200-207ENST00000493271 SUPT5HO00267 1087 aaKnown RBP19.75■□□□□ 0.75
SNRNP200-207ENST00000493271 ERCC6L2Q5T890 1561 aa19.74■□□□□ 0.75
SNRNP200-207ENST00000493271 PRG4Q92954 1404 aaPredicted RBP19.62■□□□□ 0.73
SNRNP200-207ENST00000493271 JPH4Q96JJ6 628 aa19.6■□□□□ 0.73
SNRNP200-207ENST00000493271 RUSC2Q8N2Y8 1516 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms