RNA–Protein interactions for RNA: ENST00000493220.5

NF1-215, Transcript of neurofibromin 1, humanhuman

TSL 2

Gene NF1, Length 5,691 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-215ENST00000493220 NISCHQ9Y2I1 1504 aa12.7□□□□□ -0.38
NF1-215ENST00000493220 DCAF8L2P0C7V8 631 aa11.62□□□□□ -0.55
NF1-215ENST00000493220 CCDC180Q9P1Z9 1646 aa11.03□□□□□ -0.64
NF1-215ENST00000493220 ABCC9O60706 1549 aa10.9□□□□□ -0.66
NF1-215ENST00000493220 SHROOM4Q9ULL8 1493 aa10.89□□□□□ -0.67
NF1-215ENST00000493220 SUPT5HO00267 1087 aaKnown RBP10.68□□□□□ -0.7
NF1-215ENST00000493220 RB1CC1Q8TDY2 1594 aa10.57□□□□□ -0.72
NF1-215ENST00000493220 ZCCHC6Q5VYS8 1495 aaKnown RBP10.56□□□□□ -0.72
NF1-215ENST00000493220 NACADO15069 1562 aa10.51□□□□□ -0.73
NF1-215ENST00000493220 PABPN1Q86U42 306 aaKnown RBP eCLIP10.42□□□□□ -0.74
NF1-215ENST00000493220 SCRIBQ14160 1630 aa10.39□□□□□ -0.75
NF1-215ENST00000493220 DCAF1Q9Y4B6 1507 aa10.38□□□□□ -0.75
NF1-215ENST00000493220 MYO15BQ96JP2 1530 aa10.27□□□□□ -0.76
NF1-215ENST00000493220 FAM9AQ8IZU1 332 aaPredicted RBP10.24□□□□□ -0.77
NF1-215ENST00000493220 TRIM41Q8WV44 630 aa10.1□□□□□ -0.79
NF1-215ENST00000493220 SLC24A1O60721 1099 aa10□□□□□ -0.81
NF1-215ENST00000493220 APLP2Q06481 763 aa9.99□□□□□ -0.81
NF1-215ENST00000493220 BAZ1AQ9NRL2 1556 aaPredicted RBP9.98□□□□□ -0.81
NF1-215ENST00000493220 MYT1Q01538 1121 aa9.95□□□□□ -0.82
NF1-215ENST00000493220 BAZ1BQ9UIG0 1483 aaKnown RBP9.94□□□□□ -0.82
NF1-215ENST00000493220 EHMT2Q96KQ7 1210 aa9.94□□□□□ -0.82
NF1-215ENST00000493220 SMARCA2P51531 1590 aa9.9□□□□□ -0.82
NF1-215ENST00000493220 UBTFP17480 764 aaKnown RBP9.86□□□□□ -0.83
NF1-215ENST00000493220 RSF1Q96T23 1441 aaPredicted RBP9.85□□□□□ -0.83
NF1-215ENST00000493220 CECR2Q9BXF3 1484 aa9.78□□□□□ -0.84
NF1-215ENST00000493220 RANGAP1P46060 587 aaPredicted RBP9.78□□□□□ -0.84
NF1-215ENST00000493220 ERCC6Q03468 1493 aa9.77□□□□□ -0.85
NF1-215ENST00000493220 ATP1B4Q9UN42 357 aaPredicted RBP9.76□□□□□ -0.85
NF1-215ENST00000493220 SMARCA4P51532 1647 aa9.76□□□□□ -0.85
NF1-215ENST00000493220 MROH2BQ7Z745 1585 aa9.73□□□□□ -0.85
NF1-215ENST00000493220 CHIC1Q5VXU3 224 aa9.72□□□□□ -0.85
NF1-215ENST00000493220 TOP2AP11388 1531 aaKnown RBP9.71□□□□□ -0.85
NF1-215ENST00000493220 EIF4G1Q04637 1599 aaKnown RBP9.69□□□□□ -0.86
NF1-215ENST00000493220 ATAD2BQ9ULI0 1458 aa9.69□□□□□ -0.86
NF1-215ENST00000493220 PDS5BQ9NTI5 1447 aa9.68□□□□□ -0.86
NF1-215ENST00000493220 PELP1Q8IZL8 1130 aaKnown RBP9.67□□□□□ -0.86
NF1-215ENST00000493220 FBLN2P98095 1184 aa9.67□□□□□ -0.86
NF1-215ENST00000493220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.63□□□□□ -0.87
NF1-215ENST00000493220 HNRNPUL2Q1KMD3 747 aaKnown RBP9.63□□□□□ -0.87
NF1-215ENST00000493220 WIZO95785 1651 aa9.63□□□□□ -0.87
NF1-215ENST00000493220 TTBK1Q5TCY1 1321 aaPredicted RBP9.61□□□□□ -0.87
NF1-215ENST00000493220 NCAPD3P42695 1498 aa9.61□□□□□ -0.87
NF1-215ENST00000493220 BICRAQ9NZM4 1560 aa9.61□□□□□ -0.87
NF1-215ENST00000493220 CCDC88BA6NC98 1476 aa9.6□□□□□ -0.87
NF1-215ENST00000493220 CC2D2AQ9P2K1 1620 aa9.59□□□□□ -0.87
NF1-215ENST00000493220 WRNQ14191 1432 aaPredicted RBP eCLIP9.58□□□□□ -0.88
NF1-215ENST00000493220 CADPSQ9ULU8 1353 aa9.58□□□□□ -0.88
NF1-215ENST00000493220 UNC13AQ9UPW8 1703 aa9.58□□□□□ -0.88
NF1-215ENST00000493220 HMGXB3Q12766 1538 aa9.56□□□□□ -0.88
NF1-215ENST00000493220 CSRNP3Q8WYN3 585 aa9.56□□□□□ -0.88
NF1-215ENST00000493220 CEP164Q9UPV0 1460 aa9.54□□□□□ -0.88
NF1-215ENST00000493220 EEA1Q15075 1411 aa9.54□□□□□ -0.88
NF1-215ENST00000493220 CHMP7Q8WUX9 453 aaPredicted RBP9.53□□□□□ -0.88
NF1-215ENST00000493220 ERICH6Q7L0X2 663 aa9.53□□□□□ -0.88
NF1-215ENST00000493220 ABCC8Q09428 1581 aa9.52□□□□□ -0.88
NF1-215ENST00000493220 KIF27Q86VH2 1401 aa9.51□□□□□ -0.89
NF1-215ENST00000493220 MYT1LQ9UL68 1186 aa9.49□□□□□ -0.89
NF1-215ENST00000493220 FANCD2Q9BXW9 1451 aa9.47□□□□□ -0.89
NF1-215ENST00000493220 NPM1P06748 294 aaKnown RBP eCLIP9.45□□□□□ -0.9
NF1-215ENST00000493220 CDK11AQ9UQ88 783 aaPredicted RBP9.44□□□□□ -0.9
NF1-215ENST00000493220 LOC105371045A0A1W2PR82 267 aa9.42□□□□□ -0.9
NF1-215ENST00000493220 SOGA1O94964 1423 aa9.42□□□□□ -0.9
NF1-215ENST00000493220 CUX2O14529 1486 aa9.4□□□□□ -0.9
NF1-215ENST00000493220 PEG3Q9GZU2 1588 aa9.4□□□□□ -0.91
NF1-215ENST00000493220 GOLGA3Q08378 1498 aa9.39□□□□□ -0.91
NF1-215ENST00000493220 LAMC3Q9Y6N6 1575 aa9.38□□□□□ -0.91
NF1-215ENST00000493220 MRC2Q9UBG0 1479 aa9.37□□□□□ -0.91
NF1-215ENST00000493220 CFTRP13569 1480 aa9.36□□□□□ -0.91
NF1-215ENST00000493220 P3H3Q8IVL6 736 aa9.35□□□□□ -0.91
NF1-215ENST00000493220 CARMIL1Q5VZK9 1371 aa9.32□□□□□ -0.92
NF1-215ENST00000493220 TRIM26Q12899 539 aaPredicted RBP9.3□□□□□ -0.92
NF1-215ENST00000493220 PCGF6Q9BYE7 350 aa9.29□□□□□ -0.92
NF1-215ENST00000493220 ZEB1P37275 1124 aaPredicted RBP9.29□□□□□ -0.92
NF1-215ENST00000493220 FAM50AQ14320 339 aaKnown RBP9.29□□□□□ -0.92
NF1-215ENST00000493220 IFT140Q96RY7 1462 aa9.28□□□□□ -0.92
NF1-215ENST00000493220 CARMIL2Q6F5E8 1435 aa9.28□□□□□ -0.92
NF1-215ENST00000493220 ITGAEP38570 1179 aa9.27□□□□□ -0.92
NF1-215ENST00000493220 PPARGC1BQ86YN6 1023 aaKnown RBP9.27□□□□□ -0.92
NF1-215ENST00000493220 TDRD9Q8NDG6 1382 aaKnown RBP9.27□□□□□ -0.93
NF1-215ENST00000493220 CCER1Q8TC90 406 aaPredicted RBP9.27□□□□□ -0.93
NF1-215ENST00000493220 FGD5Q6ZNL6 1462 aa9.27□□□□□ -0.93
NF1-215ENST00000493220 CLIP1P30622 1438 aa9.27□□□□□ -0.93
NF1-215ENST00000493220 DNAJC5BQ9UF47 199 aa9.26□□□□□ -0.93
NF1-215ENST00000493220 NESP48681 1621 aa9.26□□□□□ -0.93
NF1-215ENST00000493220 DNMBPQ6XZF7 1577 aa9.25□□□□□ -0.93
NF1-215ENST00000493220 ARID3CA6NKF2 412 aa9.25□□□□□ -0.93
NF1-215ENST00000493220 TNIKQ9UKE5 1360 aa9.24□□□□□ -0.93
NF1-215ENST00000493220 RAPGEF2Q9Y4G8 1499 aa9.23□□□□□ -0.93
NF1-215ENST00000493220 GAPVD1Q14C86 1478 aa9.23□□□□□ -0.93
NF1-215ENST00000493220 PLEKHD1A6NEE1 506 aa9.21□□□□□ -0.94
NF1-215ENST00000493220 FHAD1B1AJZ9 1412 aa9.21□□□□□ -0.94
NF1-215ENST00000493220 TOPBP1Q92547 1522 aa9.21□□□□□ -0.94
NF1-215ENST00000493220 MTUS2Q5JR59 1369 aa9.2□□□□□ -0.94
NF1-215ENST00000493220 GRIN2BQ13224 1484 aa9.2□□□□□ -0.94
NF1-215ENST00000493220 OSCARQ8IYS5 282 aa9.19□□□□□ -0.94
NF1-215ENST00000493220 ZNF777Q9ULD5 760 aaPredicted RBP9.19□□□□□ -0.94
NF1-215ENST00000493220 CEP162Q5TB80 1403 aa9.19□□□□□ -0.94
NF1-215ENST00000493220 TOP2BQ02880 1626 aa9.18□□□□□ -0.94
NF1-215ENST00000493220 RAD54L2Q9Y4B4 1467 aa9.17□□□□□ -0.94
NF1-215ENST00000493220 ESF1Q9H501 851 aaKnown RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms