RNA–Protein interactions for RNA: ENST00000493207.1

RER1-208, Transcript of retention in endoplasmic reticulum sorting receptor 1, humanhuman

TSL 2

Gene RER1, Length 686 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RER1-208ENST00000493207 NISCHQ9Y2I1 1504 aa40.5■■■■■ 4.07
RER1-208ENST00000493207 CCDC180Q9P1Z9 1646 aa35.93■■■■□ 3.34
RER1-208ENST00000493207 ABCC9O60706 1549 aa34.9■■■■□ 3.18
RER1-208ENST00000493207 ZCCHC6Q5VYS8 1495 aaKnown RBP33.8■■■■□ 3
RER1-208ENST00000493207 DCAF8L2P0C7V8 631 aa33.75■■■□□ 2.99
RER1-208ENST00000493207 NACADO15069 1562 aa33.68■■■□□ 2.98
RER1-208ENST00000493207 RB1CC1Q8TDY2 1594 aa33.68■■■□□ 2.98
RER1-208ENST00000493207 MYO15BQ96JP2 1530 aa33.52■■■□□ 2.96
RER1-208ENST00000493207 DCAF1Q9Y4B6 1507 aa33.49■■■□□ 2.95
RER1-208ENST00000493207 UNC13AQ9UPW8 1703 aa33■■■□□ 2.87
RER1-208ENST00000493207 SCRIBQ14160 1630 aa32.84■■■□□ 2.85
RER1-208ENST00000493207 BICRAQ9NZM4 1560 aa32.66■■■□□ 2.82
RER1-208ENST00000493207 PABPN1Q86U42 306 aaKnown RBP eCLIP32.64■■■□□ 2.82
RER1-208ENST00000493207 SHROOM4Q9ULL8 1493 aa32.28■■■□□ 2.76
RER1-208ENST00000493207 EIF4G1Q04637 1599 aaKnown RBP31.77■■■□□ 2.68
RER1-208ENST00000493207 DNAJC5BQ9UF47 199 aa31.75■■■□□ 2.67
RER1-208ENST00000493207 CC2D2AQ9P2K1 1620 aa31.6■■■□□ 2.65
RER1-208ENST00000493207 CECR2Q9BXF3 1484 aa31.53■■■□□ 2.64
RER1-208ENST00000493207 SMARCA4P51532 1647 aa31.41■■■□□ 2.62
RER1-208ENST00000493207 BAZ1AQ9NRL2 1556 aaPredicted RBP31.39■■■□□ 2.61
RER1-208ENST00000493207 MROH2BQ7Z745 1585 aa31.24■■■□□ 2.59
RER1-208ENST00000493207 ATAD2BQ9ULI0 1458 aa31.13■■■□□ 2.57
RER1-208ENST00000493207 SMARCA2P51531 1590 aa31.11■■■□□ 2.57
RER1-208ENST00000493207 PEG3Q9GZU2 1588 aa31.05■■■□□ 2.56
RER1-208ENST00000493207 NCAPD3P42695 1498 aa31.04■■■□□ 2.56
RER1-208ENST00000493207 HMGXB3Q12766 1538 aa30.96■■■□□ 2.55
RER1-208ENST00000493207 WIZO95785 1651 aa30.96■■■□□ 2.55
RER1-208ENST00000493207 RSF1Q96T23 1441 aaPredicted RBP30.95■■■□□ 2.54
RER1-208ENST00000493207 BAZ1BQ9UIG0 1483 aaKnown RBP30.91■■■□□ 2.54
RER1-208ENST00000493207 TOP2AP11388 1531 aaKnown RBP30.6■■■□□ 2.49
RER1-208ENST00000493207 SUPT5HO00267 1087 aaKnown RBP30.39■■■□□ 2.46
RER1-208ENST00000493207 NESP48681 1621 aa30.29■■■□□ 2.44
RER1-208ENST00000493207 CCDC88BA6NC98 1476 aa30.23■■■□□ 2.43
RER1-208ENST00000493207 LAMC3Q9Y6N6 1575 aa30.23■■■□□ 2.43
RER1-208ENST00000493207 CADPSQ9ULU8 1353 aa30.16■■■□□ 2.42
RER1-208ENST00000493207 ERCC6Q03468 1493 aa30.06■■■□□ 2.4
RER1-208ENST00000493207 CFTRP13569 1480 aa30.05■■■□□ 2.4
RER1-208ENST00000493207 KIF21AQ7Z4S6 1674 aa29.99■■■□□ 2.39
RER1-208ENST00000493207 PDS5BQ9NTI5 1447 aa29.98■■■□□ 2.39
RER1-208ENST00000493207 PRDM2Q13029 1718 aa29.95■■■□□ 2.38
RER1-208ENST00000493207 FANCD2Q9BXW9 1451 aa29.85■■■□□ 2.37
RER1-208ENST00000493207 CEP164Q9UPV0 1460 aa29.79■■■□□ 2.36
RER1-208ENST00000493207 THOC2Q8NI27 1593 aaKnown RBP29.78■■■□□ 2.36
RER1-208ENST00000493207 MRC2Q9UBG0 1479 aa29.69■■■□□ 2.34
RER1-208ENST00000493207 CUX2O14529 1486 aa29.61■■■□□ 2.33
RER1-208ENST00000493207 WDR62O43379 1518 aa29.59■■■□□ 2.33
RER1-208ENST00000493207 URB2Q14146 1524 aaKnown RBP29.55■■■□□ 2.32
RER1-208ENST00000493207 TOPBP1Q92547 1522 aa29.4■■■□□ 2.3
RER1-208ENST00000493207 DNMBPQ6XZF7 1577 aa29.4■■■□□ 2.3
RER1-208ENST00000493207 ABCC8Q09428 1581 aa29.39■■■□□ 2.29
RER1-208ENST00000493207 CUX1P39880 1505 aa29.3■■■□□ 2.28
RER1-208ENST00000493207 WRNQ14191 1432 aaPredicted RBP eCLIP29.18■■■□□ 2.264e-8■■■■■ 27.9
RER1-208ENST00000493207 POLA1P09884 1462 aaPredicted RBP29.17■■■□□ 2.26
RER1-208ENST00000493207 FGD5Q6ZNL6 1462 aa29.15■■■□□ 2.26
RER1-208ENST00000493207 SYNJ1O43426 1573 aa29.14■■■□□ 2.26
RER1-208ENST00000493207 IFT140Q96RY7 1462 aa29.14■■■□□ 2.26
RER1-208ENST00000493207 BIVM-ERCC5R4GMW8 1640 aa29.12■■■□□ 2.25
RER1-208ENST00000493207 TOP2BQ02880 1626 aa29.12■■■□□ 2.25
RER1-208ENST00000493207 TARBP1Q13395 1621 aaKnown RBP29.09■■■□□ 2.25
RER1-208ENST00000493207 RAD54L2Q9Y4B4 1467 aa29.05■■■□□ 2.24
RER1-208ENST00000493207 SOGA1O94964 1423 aa29.04■■■□□ 2.24
RER1-208ENST00000493207 ZNF608Q9ULD9 1512 aaPredicted RBP29.01■■■□□ 2.23
RER1-208ENST00000493207 EIF4G3O43432 1585 aaKnown RBP28.94■■■□□ 2.22
RER1-208ENST00000493207 WDR97A6NE52 1622 aa28.94■■■□□ 2.22
RER1-208ENST00000493207 AQRO60306 1485 aaKnown RBP eCLIP28.87■■■□□ 2.21
RER1-208ENST00000493207 ABCA10Q8WWZ4 1543 aa28.86■■■□□ 2.21
RER1-208ENST00000493207 TDRD9Q8NDG6 1382 aaKnown RBP28.86■■■□□ 2.21
RER1-208ENST00000493207 ABCA5Q8WWZ7 1642 aa28.76■■■□□ 2.19
RER1-208ENST00000493207 PBRM1Q86U86 1689 aa28.73■■■□□ 2.19
RER1-208ENST00000493207 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
RER1-208ENST00000493207 GRIN2BQ13224 1484 aa28.67■■■□□ 2.18
RER1-208ENST00000493207 TRIM41Q8WV44 630 aa28.67■■■□□ 2.18
RER1-208ENST00000493207 SNAPC4Q5SXM2 1469 aa28.62■■■□□ 2.17
RER1-208ENST00000493207 MAGI1Q96QZ7 1491 aaPredicted RBP28.57■■■□□ 2.16
RER1-208ENST00000493207 CHD1O14646 1710 aa28.56■■■□□ 2.16
RER1-208ENST00000493207 KIF27Q86VH2 1401 aa28.54■■■□□ 2.16
RER1-208ENST00000493207 ERICH3Q5RHP9 1530 aa28.53■■■□□ 2.16
RER1-208ENST00000493207 CHIC1Q5VXU3 224 aa28.49■■■□□ 2.15
RER1-208ENST00000493207 FBLN2P98095 1184 aa28.48■■■□□ 2.15
RER1-208ENST00000493207 ADAMTS12P58397 1594 aa28.47■■■□□ 2.15
RER1-208ENST00000493207 SYNJ2O15056 1496 aa28.46■■■□□ 2.15
RER1-208ENST00000493207 CHMP7Q8WUX9 453 aaPredicted RBP28.42■■■□□ 2.14
RER1-208ENST00000493207 OSCARQ8IYS5 282 aa28.41■■■□□ 2.14
RER1-208ENST00000493207 RUSC2Q8N2Y8 1516 aa28.4■■■□□ 2.14
RER1-208ENST00000493207 IGF1RP08069 1367 aa28.38■■■□□ 2.13
RER1-208ENST00000493207 FHAD1B1AJZ9 1412 aa28.38■■■□□ 2.13
RER1-208ENST00000493207 DNAJC5Q9H3Z4 198 aa28.36■■■□□ 2.13
RER1-208ENST00000493207 CUL7Q14999 1698 aa28.35■■■□□ 2.13
RER1-208ENST00000493207 GRIN2AQ12879 1464 aa28.32■■■□□ 2.12
RER1-208ENST00000493207 CARMIL1Q5VZK9 1371 aa28.23■■■□□ 2.11
RER1-208ENST00000493207 CEP170Q5SW79 1584 aa28.2■■■□□ 2.1
RER1-208ENST00000493207 CLASP1Q7Z460 1538 aa28.19■■■□□ 2.1
RER1-208ENST00000493207 NUP160Q12769 1436 aa28.16■■■□□ 2.1
RER1-208ENST00000493207 EEA1Q15075 1411 aa28.15■■■□□ 2.1
RER1-208ENST00000493207 RAPGEF2Q9Y4G8 1499 aa28.11■■■□□ 2.09
RER1-208ENST00000493207 FAM9AQ8IZU1 332 aaPredicted RBP28.1■■■□□ 2.09
RER1-208ENST00000493207 CSRNP3Q8WYN3 585 aa28.08■■■□□ 2.09
RER1-208ENST00000493207 PRXQ9BXM0 1461 aa28.05■■■□□ 2.08
RER1-208ENST00000493207 RIMBP3CA6NJZ7 1639 aa28■■■□□ 2.07
RER1-208ENST00000493207 RIMBP3BA6NNM3 1639 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms